Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
eAED | 0.21 |
QI | 0|0|0|1|0|0.33|3|0|802 |
AED | 0.21 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
SL2000774 | SL2000774 | Spodoptera littoralis | gene | scaffold232 36213..40299 + |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
SL2000774-RA:exon:1725 | SL2000774-RA:exon:1725 | Spodoptera littoralis | exon | scaffold232 36213..36762 + |
SL2000774-RA:exon:1726 | SL2000774-RA:exon:1726 | Spodoptera littoralis | exon | scaffold232 37436..38770 + |
SL2000774-RA:exon:1727 | SL2000774-RA:exon:1727 | Spodoptera littoralis | exon | scaffold232 39776..40299 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
SL2000774-RA:cds | SL2000774-RA:cds | Spodoptera littoralis | CDS | scaffold232 36213..36762 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >SL2000774-RA ID=SL2000774-RA|Name=SL2000774-RA|organism=Spodoptera littoralis|type=mRNA|length=2409bp|location=Sequence derived from alignment at scaffold232:36213..40299+ (Spodoptera littoralis)|Notes=Excludes all bases but those of type(s): exon.
ATGAATTTTCTAAATAATATCACGTATAGACGCAATCGTTCTAAGTCTGA AACATCAAATAATGATACGGTCTCGACGAACTCACCAATAGATGGCACCA CGACCAGTTTACCTGACATTTCTGATGACGAAGATGACCAATGCACTAAG TTAAAACAAAAATTAGAAAAATTATCTCTAGAACTCAATAGTGCCCACAA CGAAATAGATTCTCTGACTCTAGAAAATACGCAGCTCAAACACCTTAATG AGGAGCTACAAAAACAAAATGCTCTGTATAAAAAGGTGACATGCTCCCCT GCCAAGCCAAGCATGCAAACACCTAAAATTAAAAAAACATCTGCAAAAAT TAAACAGTACGCGAAAAATAACCCAAAAACGTCTAGTGAATATAAAAACA TCACAAGTATAGCTTCGAAATCCACATTTCCAACCAATGAACAAAATCAA TCGCAGTTAGATAAAGCGATCACAGATGGCGTTATCAGTGATTCTTGCAA TAAAGAACAAAGAAAGACAGAAACACAATCTACGCAATTAAATTATAAAA CTGGTTTGATAAATAAAGCAGATGATCTGTTGGTATGTCTGGAGGAGCTT GCGAGTAAGGATACTAGTATTGATATCGTTTGTATTACAGAGCACTTTAT CATGGATGGGTATCAGAATTTGTTGTTTTTGCCCAACTATGATTTGGCTG CATATTATTGTAGAATAGGACAGAAACGGGGTGGTGCGTGTATCCTTGTT AAAAATGGGTTACAATGGAAAGAATTGCCAAAAGTAGCAAAATTATCAAC TCCAGGGATATTCGAGTGCTGTGGCGTAGAACTGACTAGTTACAAAATGA CAATAGTTTGTATATATAGAATTCCTAACCCAAATAATTTAAATTATTGC TTCGAGAAACTTGAAATGCTCATGCGTGAGATTTTATGTTCATCTTGTAG AAAAATTGTTGTTTGCGGAGATTTCAACATTGATGTACTTAAGCAAAGCA GAGAAGCGACTGAATTAGAATGTTTTTTAATGAGTTACAATATGAAACTT GCCTTAAAAGAACCAACTCGCATGGCTAGCTTATCATGCATAGACAACTT TGCACATAACTTTAATACATGTAAGACTGAAGTGTTTGAATGGGCGTTAT CGGATCATACGGCACAGCTGCTTAAATGTCCCGTACAAAAACTATGCTGT ATTAAGTATTGGTATGCAACTAGAAGGGACTACAATACGGAAAATATTAT AAAATTTAAAAACCATCTCAAGAGTCTTACTTTTTCAGAAATTTATGAAA CGGATGACCCAAATATAGCTTATAATTGTTTCGCCGCGATTTTCAAGTTA CTGTACGACCTGTGTTTTCCATTTAGAGCGGTTAAAATAAATGCGATACG ACGTACTAAGTGGGTGTCAAAAGGCATTAAATTATGCAGTAAAAAGAAAA GAAAACTTCTATGGCAATTTCGACTAAATCGAAGCCATAATAATAAAAAC GTATTATATAATTACTCTAAAATTTACAAAAAAATCATACGGCTAACTCA AAAAGCACAAAACAATTACAATATAAAAACATCTGAAAACAAATCTAAAA CCGCGTGGCAAATAATTAATCGTGCAAAGTATAACGTACCTAAATCCAAC ATAAATAGAATTAAAATAGGTGACTGCATCATGACACATCACAGTACTAT TGCAGAAGCATTTAATAATTTTTTCATTGATAAGGTGCAACCAAAGCAGG GTATAGCGAGGTCTGCACCTAGGGGATTTACTGTAGACCACAATAATAAA ACTATGTTTATGGCCCCTAGTATACCAACCGAGATTAAAAAAATAATAAT GTCCTTAAATAATACAAGTAGTGTAGGATATGATGAGGCATTACTTGCTG CTTACTATGGGTTAACTGAATCCCACCTACGCTATGGTGTAATTTTCTGG GGTAACTCGGCAGAAAAAGACACGATTTTCAAGGCTCAAAAGAGATGCGT ACGTTCATTATTTAAAATTAAACCCACTGATAGTTGCCTGCCATACTTTA AGAAAAATAAAATACTCACTTTGCCATGTCTGTACATTTTAGAGGTAGCT GTATTTGTCAAAACGAATCCACACCGATTTAAACTATTAAATGAAATAGT CCCACGTAACAGGCGCGATAACAGTAGGATATGCACGCATACTGCGAGAA CTTCCCTAATGCGTAAAAGTATTTTCTGTATGGCGCCTGTGATATTTAAT AAATTACCTAAAATTTTGAGAGAACTACCCTTGACACATTTTAAAAATAA GCTGAGAAGGTTTTTAGTTAATAAAGCCTATTACAGTGTTCAGGACTTTT TGAATGAAAAAGACGTTCTAATTCAGACTTCGTATAACATATTTAATGGT GAAGAATAA back to topprotein sequence of SL2000774-RA >SL2000774-PA ID=SL2000774-PA|Name=SL2000774-RA|organism=Spodoptera littoralis|type=polypeptide|length=802bp
MNFLNNITYRRNRSKSETSNNDTVSTNSPIDGTTTSLPDISDDEDDQCTK LKQKLEKLSLELNSAHNEIDSLTLENTQLKHLNEELQKQNALYKKVTCSP AKPSMQTPKIKKTSAKIKQYAKNNPKTSSEYKNITSIASKSTFPTNEQNQ SQLDKAITDGVISDSCNKEQRKTETQSTQLNYKTGLINKADDLLVCLEEL ASKDTSIDIVCITEHFIMDGYQNLLFLPNYDLAAYYCRIGQKRGGACILV KNGLQWKELPKVAKLSTPGIFECCGVELTSYKMTIVCIYRIPNPNNLNYC FEKLEMLMREILCSSCRKIVVCGDFNIDVLKQSREATELECFLMSYNMKL ALKEPTRMASLSCIDNFAHNFNTCKTEVFEWALSDHTAQLLKCPVQKLCC IKYWYATRRDYNTENIIKFKNHLKSLTFSEIYETDDPNIAYNCFAAIFKL LYDLCFPFRAVKINAIRRTKWVSKGIKLCSKKKRKLLWQFRLNRSHNNKN VLYNYSKIYKKIIRLTQKAQNNYNIKTSENKSKTAWQIINRAKYNVPKSN INRIKIGDCIMTHHSTIAEAFNNFFIDKVQPKQGIARSAPRGFTVDHNNK TMFMAPSIPTEIKKIIMSLNNTSSVGYDEALLAAYYGLTESHLRYGVIFW GNSAEKDTIFKAQKRCVRSLFKIKPTDSCLPYFKKNKILTLPCLYILEVA VFVKTNPHRFKLLNEIVPRNRRDNSRICTHTARTSLMRKSIFCMAPVIFN KLPKILRELPLTHFKNKLRRFLVNKAYYSVQDFLNEKDVLIQTSYNIFNG EE back to topmRNA from alignment at scaffold232:36213..40299+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >SL2000774-RA ID=SL2000774-RA|Name=SL2000774-RA|organism=Spodoptera littoralis|type=mRNA|length=4087bp|location=Sequence derived from alignment at scaffold232:36213..40299+ (Spodoptera littoralis) ATGAATTTTCTAAATAATATCACGTATAGACGCAATCGTTCTAAGTCTGA
AACATCAAATAATGATACGGTCTCGACGAACTCACCAATAGATGGCACCA
CGACCAGTTTACCTGACATTTCTGATGACGAAGATGACCAATGCACTAAG
TTAAAACAAAAATTAGAAAAATTATCTCTAGAACTCAATAGTGCCCACAA
CGAAATAGATTCTCTGACTCTAGAAAATACGCAGCTCAAACACCTTAATG
AGGAGCTACAAAAACAAAATGCTCTGTATAAAAAGGTGACATGCTCCCCT
GCCAAGCCAAGCATGCAAACACCTAAAATTAAAAAAACATCTGCAAAAAT
TAAACAGTACGCGAAAAATAACCCAAAAACGTCTAGTGAATATAAAAACA
TCACAAGTATAGCTTCGAAATCCACATTTCCAACCAATGAACAAAATCAA
TCGCAGTTAGATAAAGCGATCACAGATGGCGTTATCAGTGATTCTTGCAA
TAAAGAACAAAGAAAGACAGAAACACAATCTACGCAATTAAATTATAAAA
GTAAATCTAAAGTAACTAGAACGGGCAAATTATGTATTATAAGTAGCAAT
AAACATAATAAAATGTTAGAAATTGCAGAAAATACATTCCCTAATTATAA
AATTTGCCACTACCTGACACCCAACTGTGGTGTTAAGTGCCTTATCTCTG
ACTTGGATCTCAAATTGAAGGACTACAATAAGAATGACTACTGCGTGATA
TTTATAGGGGAAGATGACTTTCGTCGGACAAAGAATTATGTAGAACTAAC
TATTTATATTCGTGAAACGCTATTAAAATTACAGCACACGAATATCATAT
TATGTGCTCCTACCTTCAAATTGAATGACTATTCTATAATGTTTAACTCG
AGAATTGAAACCTTCAACAGTTTAATATATCTAGATGCTTATTCATTTAA
TTATGCATATTTGTTTGATTCAAACTATTATCTTAACTATGATTTTACTA
TGTTTAACAAAAGTAGTAGCTCTGTAGGTAATCGTGGTATGGCCAATATA
ATGCACAATATTAGTTTAATGATCGATGAAATAGTAATGTATAGTGACTT
AAATACTTATAATTCTTCTGTTGGGGTACCTGATGTGCATGACTCTGTAC
AAATCAATGACACTGATGAAAATGAATTGTTTTTTCTCTAATAAATATCT
CAACATTTTGCACCAAAATATAGCTGGTTTGATAAATAAAGCAGATGATC
TGTTGGTATGTCTGGAGGAGCTTGCGAGTAAGGATACTAGTATTGATATC
GTTTGTATTACAGAGCACTTTATCATGGATGGGTATCAGAATTTGTTGTT
TTTGCCCAACTATGATTTGGCTGCATATTATTGTAGAATAGGACAGAAAC
GGGGTGGTGCGTGTATCCTTGTTAAAAATGGGTTACAATGGAAAGAATTG
CCAAAAGTAGCAAAATTATCAACTCCAGGGATATTCGAGTGCTGTGGCGT
AGAACTGACTAGTTACAAAATGACAATAGTTTGTATATATAGAATTCCTA
ACCCAAATAATTTAAATTATTGCTTCGAGAAACTTGAAATGCTCATGCGT
GAGATTTTATGTTCATCTTGTAGAAAAATTGTTGTTTGCGGAGATTTCAA
CATTGATGTACTTAAGCAAAGCAGAGAAGCGACTGAATTAGAATGTTTTT
TAATGAGTTACAATATGAAACTTGCCTTAAAAGAACCAACTCGCATGGCT
AGCTTATCATGCATAGACAACTTTGCACATAACTTTAATACATGTAAGAC
TGAAGTGTTTGAATGGGCGTTATCGGATCATACGGCACAGCTGCTTAAAT
GTCCCGTACAAAAACTATGCTGTATTAAGTATTGGTATGCAACTAGAAGG
GACTACAATACGGAAAATATTATAAAATTTAAAAACCATCTCAAGAGTCT
TACTTTTTCAGAAATTTATGAAACGGATGACCCAAATATAGCTTATAATT
GTTTCGCCGCGATTTTCAAGTTACTGTACGACCTGTGTTTTCCATTTAGA
GCGGTTAAAATAAATGCGATACGACGTACTAAGTGGGTGTCAAAAGGCAT
TAAATTATGCAGTAAAAAGAAAAGAAAACTTCTATGGCAATTTCGACTAA
ATCGAAGCCATAATAATAAAAACGTATTATATAATTACTCTAAAATTTAC
AAAAAAATCATACGGCTAACTCAAAAAGCACAAAACAATTACAATATAAA
AACATCTGAAAACAAATCTAAAACCGCGTGGCAAATAATTAATCGTGCAA
AGTATAACGTACCTAAATCCAACATAAATAGAATTAAAATAGGTGACTGC
ATCATGACACATCACAGTACTATTGCAGAAGCATTTAATAATTTTTTCAT
TGATAAGGTGCAACCAAAGCAGGGTATAGCGAGGTCTGCACCTAGGGGAT
TTACTGTAGACCACAATAATAAAACTATGTTTATGGCCCCTAGTATACCA
ACCGAGATTAAAAAAATAATAATGTCCTTAAATAATACAAGTAGTGTAGG
ATATGATGGTATTGCTACGAATATACTGAAACAAGTTGCGGACGAAATCT
GCGGTCACTTGAGTCATGTTATAAATCTCAGCATTAGTGCAGGCGTCTAT
CCTGATGCCCTAAAAGTATCAATAGTTAAGCCACTATTTAAGAAAGCAGA
TAGGGAATTAATGGAGAATTATAGACCTATATCACTAATACCTGTAATTT
CTAAAATATTTGAAAAATTCATTTGCAAGGAATTAAATTCATTTATAGAA
AAACATAATATTCTATGCAAAGAACAGAAAGGATTTAGAGTGGGTAAAAC
TATTAACATGGCCATCTATGATTTTTTACATAATGTTATACATAATGTAG
ATAAGAGAAAACCGGTCTGTGGCGTATTTTGTGATATGACTCAAGCCTTT
GACTATGTACACTACGGGACACTCTTGAATAAACTTGAGACGTATGGAGT
CAGAGGAAACGTAAACAATCTCATTAAATCTTATTTAAATAACAGGACTC
AAATTACACACATAAACGCAATTGACATGAAAAGTAAACATGACAACGTG
TATCAGTCTAGAGAACGTACAGTTTCATTTGGTGTGCCACAAGGGAGTGT
TTTGGGGCCTCTCTTATTCATTTTGTATATAAATGATCTGCCAAAAGGCA
TCCCTCAACCCCTGACACTATTTGCCGATGATAGCACCATAACAATACCG
TGTGAAAGTATCGATACTTATGAGAGTGACATAAATGTATCTATAAATTT
AATGGTAAAGTGGCTAGATGATAACAATCTAAAAATTAATCTCACTAAAA
CTAAATTAATACACTTTAGTCAAAGGATCAATACCAAAAGCAGTCTCAAT
GTACACTACGCTGACCAACCTATAGAAGAGGTAGAAACAACTAAATTTTT
AGGGCTCTACATTGATAAAAAGCTAAACTGGAAGGCCCATATCGAAATCT
TATGCAGGAAGTTAAGTAAGTCTGCCTACGCCCTACACACGTTATCGTCT
ATAATAGGTGTAGAGGCATTACTTGCTGCTTACTATGGGTTAACTGAATC
CCACCTACGCTATGGTGTAATTTTCTGGGGTAACTCGGCAGAAAAAGACA
CGATTTTCAAGGCTCAAAAGAGATGCGTACGTTCATTATTTAAAATTAAA
CCCACTGATAGTTGCCTGCCATACTTTAAGAAAAATAAAATACTCACTTT
GCCATGTCTGTACATTTTAGAGGTAGCTGTATTTGTCAAAACGAATCCAC
ACCGATTTAAACTATTAAATGAAATAGTCCCACGTAACAGGCGCGATAAC
AGTAGGATATGCACGCATACTGCGAGAACTTCCCTAATGCGTAAAAGTAT
TTTCTGTATGGCGCCTGTGATATTTAATAAATTACCTAAAATTTTGAGAG
AACTACCCTTGACACATTTTAAAAATAAGCTGAGAAGGTTTTTAGTTAAT
AAAGCCTATTACAGTGTTCAGGACTTTTTGAATGAAAAAGACGTTCTAAT
TCAGACTTCGTATAACATATTTAATGGTGAAGAATAA back to topCoding sequence (CDS) from alignment at scaffold232:36213..40299+ >SL2000774-RA ID=SL2000774-RA|Name=SL2000774-RA|organism=Spodoptera littoralis|type=CDS|length=2409bp|location=Sequence derived from alignment at scaffold232:36213..40299+ (Spodoptera littoralis) ATGAATTTTCTAAATAATATCACGTATAGACGCAATCGTTCTAAGTCTGA AACATCAAATAATGATACGGTCTCGACGAACTCACCAATAGATGGCACCA CGACCAGTTTACCTGACATTTCTGATGACGAAGATGACCAATGCACTAAG TTAAAACAAAAATTAGAAAAATTATCTCTAGAACTCAATAGTGCCCACAA CGAAATAGATTCTCTGACTCTAGAAAATACGCAGCTCAAACACCTTAATG AGGAGCTACAAAAACAAAATGCTCTGTATAAAAAGGTGACATGCTCCCCT GCCAAGCCAAGCATGCAAACACCTAAAATTAAAAAAACATCTGCAAAAAT TAAACAGTACGCGAAAAATAACCCAAAAACGTCTAGTGAATATAAAAACA TCACAAGTATAGCTTCGAAATCCACATTTCCAACCAATGAACAAAATCAA TCGCAGTTAGATAAAGCGATCACAGATGGCGTTATCAGTGATTCTTGCAA TAAAGAACAAAGAAAGACAGAAACACAATCTACGCAATTAAATTATAAAA CTGGTTTGATAAATAAAGCAGATGATCTGTTGGTATGTCTGGAGGAGCTT GCGAGTAAGGATACTAGTATTGATATCGTTTGTATTACAGAGCACTTTAT CATGGATGGGTATCAGAATTTGTTGTTTTTGCCCAACTATGATTTGGCTG CATATTATTGTAGAATAGGACAGAAACGGGGTGGTGCGTGTATCCTTGTT AAAAATGGGTTACAATGGAAAGAATTGCCAAAAGTAGCAAAATTATCAAC TCCAGGGATATTCGAGTGCTGTGGCGTAGAACTGACTAGTTACAAAATGA CAATAGTTTGTATATATAGAATTCCTAACCCAAATAATTTAAATTATTGC TTCGAGAAACTTGAAATGCTCATGCGTGAGATTTTATGTTCATCTTGTAG AAAAATTGTTGTTTGCGGAGATTTCAACATTGATGTACTTAAGCAAAGCA GAGAAGCGACTGAATTAGAATGTTTTTTAATGAGTTACAATATGAAACTT GCCTTAAAAGAACCAACTCGCATGGCTAGCTTATCATGCATAGACAACTT TGCACATAACTTTAATACATGTAAGACTGAAGTGTTTGAATGGGCGTTAT CGGATCATACGGCACAGCTGCTTAAATGTCCCGTACAAAAACTATGCTGT ATTAAGTATTGGTATGCAACTAGAAGGGACTACAATACGGAAAATATTAT AAAATTTAAAAACCATCTCAAGAGTCTTACTTTTTCAGAAATTTATGAAA CGGATGACCCAAATATAGCTTATAATTGTTTCGCCGCGATTTTCAAGTTA CTGTACGACCTGTGTTTTCCATTTAGAGCGGTTAAAATAAATGCGATACG ACGTACTAAGTGGGTGTCAAAAGGCATTAAATTATGCAGTAAAAAGAAAA GAAAACTTCTATGGCAATTTCGACTAAATCGAAGCCATAATAATAAAAAC GTATTATATAATTACTCTAAAATTTACAAAAAAATCATACGGCTAACTCA AAAAGCACAAAACAATTACAATATAAAAACATCTGAAAACAAATCTAAAA CCGCGTGGCAAATAATTAATCGTGCAAAGTATAACGTACCTAAATCCAAC ATAAATAGAATTAAAATAGGTGACTGCATCATGACACATCACAGTACTAT TGCAGAAGCATTTAATAATTTTTTCATTGATAAGGTGCAACCAAAGCAGG GTATAGCGAGGTCTGCACCTAGGGGATTTACTGTAGACCACAATAATAAA ACTATGTTTATGGCCCCTAGTATACCAACCGAGATTAAAAAAATAATAAT GTCCTTAAATAATACAAGTAGTGTAGGATATGATGAGGCATTACTTGCTG CTTACTATGGGTTAACTGAATCCCACCTACGCTATGGTGTAATTTTCTGG GGTAACTCGGCAGAAAAAGACACGATTTTCAAGGCTCAAAAGAGATGCGT ACGTTCATTATTTAAAATTAAACCCACTGATAGTTGCCTGCCATACTTTA AGAAAAATAAAATACTCACTTTGCCATGTCTGTACATTTTAGAGGTAGCT GTATTTGTCAAAACGAATCCACACCGATTTAAACTATTAAATGAAATAGT CCCACGTAACAGGCGCGATAACAGTAGGATATGCACGCATACTGCGAGAA CTTCCCTAATGCGTAAAAGTATTTTCTGTATGGCGCCTGTGATATTTAAT AAATTACCTAAAATTTTGAGAGAACTACCCTTGACACATTTTAAAAATAA GCTGAGAAGGTTTTTAGTTAATAAAGCCTATTACAGTGTTCAGGACTTTT TGAATGAAAAAGACGTTCTAATTCAGACTTCGTATAACATATTTAATGGT GAAGAATAA back to top
Synonyms
The feature 'SL2000774-RA' has the following synonyms
Synonym |
maker-scaffold232-snap-gene-0.22-mRNA-1 |
|