SL2001527-RA (mRNA) Spodoptera littoralis

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSL2001527-RA
Unique NameSL2001527-RA
TypemRNA
OrganismSpodoptera littoralis (Spodoptera littoralis)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold296contigscaffold296:257012..257773 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera littoralis OGS2.12017-04-07
Properties
Property NameValue
eAED0.00
QI0|-1|0|1|-1|1|1|0|253
AED0.00
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SL2001527SL2001527Spodoptera littoralisgenescaffold296 257012..257773 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SL2001527-RA:exon:2417SL2001527-RA:exon:2417Spodoptera littoralisexonscaffold296 257012..257773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SL2001527-RA:cdsSL2001527-RA:cdsSpodoptera littoralisCDSscaffold296 257012..257773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SL2001527-RASL2001527-PASpodoptera littoralispolypeptidescaffold296 257012..257773 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SL2001527-RA ID=SL2001527-RA|Name=SL2001527-RA|organism=Spodoptera littoralis|type=mRNA|length=762bp|location=Sequence derived from alignment at scaffold296:257012..257773- (Spodoptera littoralis)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCCCTCACACGCACTGTGTCCGACTTGTGCAGCCAGTTCTACCA
ACGCATGGCTGAATTCGAGCAGGAGTTGAAGAGAACCCCAGATGCGGCCA
CTGGACTGTCAGCAGACTTTGCTGCTTTTCGCCAGTTTATCATCCAAGCA
CTGAGCACACTTCAGGAGCAAATGAAGGTAATGGCACTTTCTATCGATGG
CATTGAAATGCGCAGCCGTCATAAAATACTGCTTATGCATGGGGTGCCTG
AATCTGAGACGAATGCTGAGGATACTGCTCCAGTGGTGGTCAAAGTAGTC
AAAGACCACCTTAATATTGACATCACACCAGCTGACATCAAGCGGTGCCG
CAGAATGGGACGTTCTTCGCACAAACCCCGACCTATCCTGTTCAAACTTA
AAGATGTGGCTCTCCGAAATAGAGTGTGGCTTGCCAAAACAAAGTTGAAA
GGTTCGGGTATCACTCTCTCCGAATTTTTAACAAAAAGTCGACATAAAGT
CTTTATGGCAGCTAGGGATAAGTTCGGTGTGAGTCAGTGCTGGACGAAGG
AGGGCGTTGTGTTTGTCCTGGACTCAAAGGGATCCCGACACCGTGTTACG
ACTATGGAGGACCTTGGTAAGGTCGAATCGCAGCCTGGTGGTAAACAGCA
GCAGTCATCAGGACCATCGGAGCGGGTTGTTGTTGTTGCACAACCCGTGA
CTGCCTCAGCCACCAGAACGGTCACTTCCAAGGCATCCAAACGTGCAGCG
GCTCGCAAGTAA
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protein sequence of SL2001527-RA

>SL2001527-PA ID=SL2001527-PA|Name=SL2001527-RA|organism=Spodoptera littoralis|type=polypeptide|length=253bp
MEALTRTVSDLCSQFYQRMAEFEQELKRTPDAATGLSADFAAFRQFIIQA
LSTLQEQMKVMALSIDGIEMRSRHKILLMHGVPESETNAEDTAPVVVKVV
KDHLNIDITPADIKRCRRMGRSSHKPRPILFKLKDVALRNRVWLAKTKLK
GSGITLSEFLTKSRHKVFMAARDKFGVSQCWTKEGVVFVLDSKGSRHRVT
TMEDLGKVESQPGGKQQQSSGPSERVVVVAQPVTASATRTVTSKASKRAA
ARK
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mRNA from alignment at scaffold296:257012..257773-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>SL2001527-RA ID=SL2001527-RA|Name=SL2001527-RA|organism=Spodoptera littoralis|type=mRNA|length=762bp|location=Sequence derived from alignment at scaffold296:257012..257773- (Spodoptera littoralis)
ATGGAAGCCCTCACACGCACTGTGTCCGACTTGTGCAGCCAGTTCTACCA
ACGCATGGCTGAATTCGAGCAGGAGTTGAAGAGAACCCCAGATGCGGCCA
CTGGACTGTCAGCAGACTTTGCTGCTTTTCGCCAGTTTATCATCCAAGCA
CTGAGCACACTTCAGGAGCAAATGAAGGTAATGGCACTTTCTATCGATGG
CATTGAAATGCGCAGCCGTCATAAAATACTGCTTATGCATGGGGTGCCTG
AATCTGAGACGAATGCTGAGGATACTGCTCCAGTGGTGGTCAAAGTAGTC
AAAGACCACCTTAATATTGACATCACACCAGCTGACATCAAGCGGTGCCG
CAGAATGGGACGTTCTTCGCACAAACCCCGACCTATCCTGTTCAAACTTA
AAGATGTGGCTCTCCGAAATAGAGTGTGGCTTGCCAAAACAAAGTTGAAA
GGTTCGGGTATCACTCTCTCCGAATTTTTAACAAAAAGTCGACATAAAGT
CTTTATGGCAGCTAGGGATAAGTTCGGTGTGAGTCAGTGCTGGACGAAGG
AGGGCGTTGTGTTTGTCCTGGACTCAAAGGGATCCCGACACCGTGTTACG
ACTATGGAGGACCTTGGTAAGGTCGAATCGCAGCCTGGTGGTAAACAGCA
GCAGTCATCAGGACCATCGGAGCGGGTTGTTGTTGTTGCACAACCCGTGA
CTGCCTCAGCCACCAGAACGGTCACTTCCAAGGCATCCAAACGTGCAGCG
GCTCGCAAGTAA
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Coding sequence (CDS) from alignment at scaffold296:257012..257773-

>SL2001527-RA ID=SL2001527-RA|Name=SL2001527-RA|organism=Spodoptera littoralis|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold296:257012..257773- (Spodoptera littoralis)
ATGGAAGCCCTCACACGCACTGTGTCCGACTTGTGCAGCCAGTTCTACCA
ACGCATGGCTGAATTCGAGCAGGAGTTGAAGAGAACCCCAGATGCGGCCA
CTGGACTGTCAGCAGACTTTGCTGCTTTTCGCCAGTTTATCATCCAAGCA
CTGAGCACACTTCAGGAGCAAATGAAGGTAATGGCACTTTCTATCGATGG
CATTGAAATGCGCAGCCGTCATAAAATACTGCTTATGCATGGGGTGCCTG
AATCTGAGACGAATGCTGAGGATACTGCTCCAGTGGTGGTCAAAGTAGTC
AAAGACCACCTTAATATTGACATCACACCAGCTGACATCAAGCGGTGCCG
CAGAATGGGACGTTCTTCGCACAAACCCCGACCTATCCTGTTCAAACTTA
AAGATGTGGCTCTCCGAAATAGAGTGTGGCTTGCCAAAACAAAGTTGAAA
GGTTCGGGTATCACTCTCTCCGAATTTTTAACAAAAAGTCGACATAAAGT
CTTTATGGCAGCTAGGGATAAGTTCGGTGTGAGTCAGTGCTGGACGAAGG
AGGGCGTTGTGTTTGTCCTGGACTCAAAGGGATCCCGACACCGTGTTACG
ACTATGGAGGACCTTGGTAAGGTCGAATCGCAGCCTGGTGGTAAACAGCA
GCAGTCATCAGGACCATCGGAGCGGGTTGTTGTTGTTGCACAACCCGTGA
CTGCCTCAGCCACCAGAACGGTCACTTCCAAGGCATCCAAACGTGCAGCG
GCTCGCAAGTAA
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Synonyms
The feature 'SL2001527-RA' has the following synonyms
Synonym
augustus_masked-scaffold296-processed-gene-2.16-mRNA-1