SL2000774-RA (mRNA) Spodoptera littoralis

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	SL2000774-RA
Unique Name	SL2000774-RA
Type	mRNA
Organism	Spodoptera littoralis (Spodoptera littoralis)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold232	contig	scaffold232:36213..40299 + View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Spodoptera littoralis OGS2.1	2017-04-07

Properties


Property Name	Value
eAED	0.21
QI	0\|0\|0\|1\|0\|0.33\|3\|0\|802
AED	0.21

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
SL2000774	SL2000774	Spodoptera littoralis	gene	scaffold232 36213..40299 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SL2000774-RA:exon:1725	SL2000774-RA:exon:1725	Spodoptera littoralis	exon	scaffold232 36213..36762 +
SL2000774-RA:exon:1726	SL2000774-RA:exon:1726	Spodoptera littoralis	exon	scaffold232 37436..38770 +
SL2000774-RA:exon:1727	SL2000774-RA:exon:1727	Spodoptera littoralis	exon	scaffold232 39776..40299 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SL2000774-RA:cds	SL2000774-RA:cds	Spodoptera littoralis	CDS	scaffold232 36213..36762 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
SL2000774-RA	SL2000774-PA	Spodoptera littoralis	polypeptide	scaffold232 36213..40299 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold232:36213..40299+
coding sequence from alignment at scaffold232:36213..40299+

spliced messenger RNA

>SL2000774-RA ID=SL2000774-RA|Name=SL2000774-RA|organism=Spodoptera littoralis|type=mRNA|length=2409bp|location=Sequence derived from alignment at scaffold232:36213..40299+ (Spodoptera littoralis)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTTCTAAATAATATCACGTATAGACGCAATCGTTCTAAGTCTGA
AACATCAAATAATGATACGGTCTCGACGAACTCACCAATAGATGGCACCA
CGACCAGTTTACCTGACATTTCTGATGACGAAGATGACCAATGCACTAAG
TTAAAACAAAAATTAGAAAAATTATCTCTAGAACTCAATAGTGCCCACAA
CGAAATAGATTCTCTGACTCTAGAAAATACGCAGCTCAAACACCTTAATG
AGGAGCTACAAAAACAAAATGCTCTGTATAAAAAGGTGACATGCTCCCCT
GCCAAGCCAAGCATGCAAACACCTAAAATTAAAAAAACATCTGCAAAAAT
TAAACAGTACGCGAAAAATAACCCAAAAACGTCTAGTGAATATAAAAACA
TCACAAGTATAGCTTCGAAATCCACATTTCCAACCAATGAACAAAATCAA
TCGCAGTTAGATAAAGCGATCACAGATGGCGTTATCAGTGATTCTTGCAA
TAAAGAACAAAGAAAGACAGAAACACAATCTACGCAATTAAATTATAAAA
CTGGTTTGATAAATAAAGCAGATGATCTGTTGGTATGTCTGGAGGAGCTT
GCGAGTAAGGATACTAGTATTGATATCGTTTGTATTACAGAGCACTTTAT
CATGGATGGGTATCAGAATTTGTTGTTTTTGCCCAACTATGATTTGGCTG
CATATTATTGTAGAATAGGACAGAAACGGGGTGGTGCGTGTATCCTTGTT
AAAAATGGGTTACAATGGAAAGAATTGCCAAAAGTAGCAAAATTATCAAC
TCCAGGGATATTCGAGTGCTGTGGCGTAGAACTGACTAGTTACAAAATGA
CAATAGTTTGTATATATAGAATTCCTAACCCAAATAATTTAAATTATTGC
TTCGAGAAACTTGAAATGCTCATGCGTGAGATTTTATGTTCATCTTGTAG
AAAAATTGTTGTTTGCGGAGATTTCAACATTGATGTACTTAAGCAAAGCA
GAGAAGCGACTGAATTAGAATGTTTTTTAATGAGTTACAATATGAAACTT
GCCTTAAAAGAACCAACTCGCATGGCTAGCTTATCATGCATAGACAACTT
TGCACATAACTTTAATACATGTAAGACTGAAGTGTTTGAATGGGCGTTAT
CGGATCATACGGCACAGCTGCTTAAATGTCCCGTACAAAAACTATGCTGT
ATTAAGTATTGGTATGCAACTAGAAGGGACTACAATACGGAAAATATTAT
AAAATTTAAAAACCATCTCAAGAGTCTTACTTTTTCAGAAATTTATGAAA
CGGATGACCCAAATATAGCTTATAATTGTTTCGCCGCGATTTTCAAGTTA
CTGTACGACCTGTGTTTTCCATTTAGAGCGGTTAAAATAAATGCGATACG
ACGTACTAAGTGGGTGTCAAAAGGCATTAAATTATGCAGTAAAAAGAAAA
GAAAACTTCTATGGCAATTTCGACTAAATCGAAGCCATAATAATAAAAAC
GTATTATATAATTACTCTAAAATTTACAAAAAAATCATACGGCTAACTCA
AAAAGCACAAAACAATTACAATATAAAAACATCTGAAAACAAATCTAAAA
CCGCGTGGCAAATAATTAATCGTGCAAAGTATAACGTACCTAAATCCAAC
ATAAATAGAATTAAAATAGGTGACTGCATCATGACACATCACAGTACTAT
TGCAGAAGCATTTAATAATTTTTTCATTGATAAGGTGCAACCAAAGCAGG
GTATAGCGAGGTCTGCACCTAGGGGATTTACTGTAGACCACAATAATAAA
ACTATGTTTATGGCCCCTAGTATACCAACCGAGATTAAAAAAATAATAAT
GTCCTTAAATAATACAAGTAGTGTAGGATATGATGAGGCATTACTTGCTG
CTTACTATGGGTTAACTGAATCCCACCTACGCTATGGTGTAATTTTCTGG
GGTAACTCGGCAGAAAAAGACACGATTTTCAAGGCTCAAAAGAGATGCGT
ACGTTCATTATTTAAAATTAAACCCACTGATAGTTGCCTGCCATACTTTA
AGAAAAATAAAATACTCACTTTGCCATGTCTGTACATTTTAGAGGTAGCT
GTATTTGTCAAAACGAATCCACACCGATTTAAACTATTAAATGAAATAGT
CCCACGTAACAGGCGCGATAACAGTAGGATATGCACGCATACTGCGAGAA
CTTCCCTAATGCGTAAAAGTATTTTCTGTATGGCGCCTGTGATATTTAAT
AAATTACCTAAAATTTTGAGAGAACTACCCTTGACACATTTTAAAAATAA
GCTGAGAAGGTTTTTAGTTAATAAAGCCTATTACAGTGTTCAGGACTTTT
TGAATGAAAAAGACGTTCTAATTCAGACTTCGTATAACATATTTAATGGT
GAAGAATAA

protein sequence of SL2000774-RA

>SL2000774-PA ID=SL2000774-PA|Name=SL2000774-RA|organism=Spodoptera littoralis|type=polypeptide|length=802bp
MNFLNNITYRRNRSKSETSNNDTVSTNSPIDGTTTSLPDISDDEDDQCTK
LKQKLEKLSLELNSAHNEIDSLTLENTQLKHLNEELQKQNALYKKVTCSP
AKPSMQTPKIKKTSAKIKQYAKNNPKTSSEYKNITSIASKSTFPTNEQNQ
SQLDKAITDGVISDSCNKEQRKTETQSTQLNYKTGLINKADDLLVCLEEL
ASKDTSIDIVCITEHFIMDGYQNLLFLPNYDLAAYYCRIGQKRGGACILV
KNGLQWKELPKVAKLSTPGIFECCGVELTSYKMTIVCIYRIPNPNNLNYC
FEKLEMLMREILCSSCRKIVVCGDFNIDVLKQSREATELECFLMSYNMKL
ALKEPTRMASLSCIDNFAHNFNTCKTEVFEWALSDHTAQLLKCPVQKLCC
IKYWYATRRDYNTENIIKFKNHLKSLTFSEIYETDDPNIAYNCFAAIFKL
LYDLCFPFRAVKINAIRRTKWVSKGIKLCSKKKRKLLWQFRLNRSHNNKN
VLYNYSKIYKKIIRLTQKAQNNYNIKTSENKSKTAWQIINRAKYNVPKSN
INRIKIGDCIMTHHSTIAEAFNNFFIDKVQPKQGIARSAPRGFTVDHNNK
TMFMAPSIPTEIKKIIMSLNNTSSVGYDEALLAAYYGLTESHLRYGVIFW
GNSAEKDTIFKAQKRCVRSLFKIKPTDSCLPYFKKNKILTLPCLYILEVA
VFVKTNPHRFKLLNEIVPRNRRDNSRICTHTARTSLMRKSIFCMAPVIFN
KLPKILRELPLTHFKNKLRRFLVNKAYYSVQDFLNEKDVLIQTSYNIFNG
EE

mRNA from alignment at scaffold232:36213..40299+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>SL2000774-RA ID=SL2000774-RA|Name=SL2000774-RA|organism=Spodoptera littoralis|type=mRNA|length=4087bp|location=Sequence derived from alignment at scaffold232:36213..40299+ (Spodoptera littoralis)
ATGAATTTTCTAAATAATATCACGTATAGACGCAATCGTTCTAAGTCTGA
AACATCAAATAATGATACGGTCTCGACGAACTCACCAATAGATGGCACCA
CGACCAGTTTACCTGACATTTCTGATGACGAAGATGACCAATGCACTAAG
TTAAAACAAAAATTAGAAAAATTATCTCTAGAACTCAATAGTGCCCACAA
CGAAATAGATTCTCTGACTCTAGAAAATACGCAGCTCAAACACCTTAATG
AGGAGCTACAAAAACAAAATGCTCTGTATAAAAAGGTGACATGCTCCCCT
GCCAAGCCAAGCATGCAAACACCTAAAATTAAAAAAACATCTGCAAAAAT
TAAACAGTACGCGAAAAATAACCCAAAAACGTCTAGTGAATATAAAAACA
TCACAAGTATAGCTTCGAAATCCACATTTCCAACCAATGAACAAAATCAA
TCGCAGTTAGATAAAGCGATCACAGATGGCGTTATCAGTGATTCTTGCAA
TAAAGAACAAAGAAAGACAGAAACACAATCTACGCAATTAAATTATAAAA
GTAAATCTAAAGTAACTAGAACGGGCAAATTATGTATTATAAGTAGCAAT
AAACATAATAAAATGTTAGAAATTGCAGAAAATACATTCCCTAATTATAA
AATTTGCCACTACCTGACACCCAACTGTGGTGTTAAGTGCCTTATCTCTG
ACTTGGATCTCAAATTGAAGGACTACAATAAGAATGACTACTGCGTGATA
TTTATAGGGGAAGATGACTTTCGTCGGACAAAGAATTATGTAGAACTAAC
TATTTATATTCGTGAAACGCTATTAAAATTACAGCACACGAATATCATAT
TATGTGCTCCTACCTTCAAATTGAATGACTATTCTATAATGTTTAACTCG
AGAATTGAAACCTTCAACAGTTTAATATATCTAGATGCTTATTCATTTAA
TTATGCATATTTGTTTGATTCAAACTATTATCTTAACTATGATTTTACTA
TGTTTAACAAAAGTAGTAGCTCTGTAGGTAATCGTGGTATGGCCAATATA
ATGCACAATATTAGTTTAATGATCGATGAAATAGTAATGTATAGTGACTT
AAATACTTATAATTCTTCTGTTGGGGTACCTGATGTGCATGACTCTGTAC
AAATCAATGACACTGATGAAAATGAATTGTTTTTTCTCTAATAAATATCT
CAACATTTTGCACCAAAATATAGCTGGTTTGATAAATAAAGCAGATGATC
TGTTGGTATGTCTGGAGGAGCTTGCGAGTAAGGATACTAGTATTGATATC
GTTTGTATTACAGAGCACTTTATCATGGATGGGTATCAGAATTTGTTGTT
TTTGCCCAACTATGATTTGGCTGCATATTATTGTAGAATAGGACAGAAAC
GGGGTGGTGCGTGTATCCTTGTTAAAAATGGGTTACAATGGAAAGAATTG
CCAAAAGTAGCAAAATTATCAACTCCAGGGATATTCGAGTGCTGTGGCGT
AGAACTGACTAGTTACAAAATGACAATAGTTTGTATATATAGAATTCCTA
ACCCAAATAATTTAAATTATTGCTTCGAGAAACTTGAAATGCTCATGCGT
GAGATTTTATGTTCATCTTGTAGAAAAATTGTTGTTTGCGGAGATTTCAA
CATTGATGTACTTAAGCAAAGCAGAGAAGCGACTGAATTAGAATGTTTTT
TAATGAGTTACAATATGAAACTTGCCTTAAAAGAACCAACTCGCATGGCT
AGCTTATCATGCATAGACAACTTTGCACATAACTTTAATACATGTAAGAC
TGAAGTGTTTGAATGGGCGTTATCGGATCATACGGCACAGCTGCTTAAAT
GTCCCGTACAAAAACTATGCTGTATTAAGTATTGGTATGCAACTAGAAGG
GACTACAATACGGAAAATATTATAAAATTTAAAAACCATCTCAAGAGTCT
TACTTTTTCAGAAATTTATGAAACGGATGACCCAAATATAGCTTATAATT
GTTTCGCCGCGATTTTCAAGTTACTGTACGACCTGTGTTTTCCATTTAGA
GCGGTTAAAATAAATGCGATACGACGTACTAAGTGGGTGTCAAAAGGCAT
TAAATTATGCAGTAAAAAGAAAAGAAAACTTCTATGGCAATTTCGACTAA
ATCGAAGCCATAATAATAAAAACGTATTATATAATTACTCTAAAATTTAC
AAAAAAATCATACGGCTAACTCAAAAAGCACAAAACAATTACAATATAAA
AACATCTGAAAACAAATCTAAAACCGCGTGGCAAATAATTAATCGTGCAA
AGTATAACGTACCTAAATCCAACATAAATAGAATTAAAATAGGTGACTGC
ATCATGACACATCACAGTACTATTGCAGAAGCATTTAATAATTTTTTCAT
TGATAAGGTGCAACCAAAGCAGGGTATAGCGAGGTCTGCACCTAGGGGAT
TTACTGTAGACCACAATAATAAAACTATGTTTATGGCCCCTAGTATACCA
ACCGAGATTAAAAAAATAATAATGTCCTTAAATAATACAAGTAGTGTAGG
ATATGATGGTATTGCTACGAATATACTGAAACAAGTTGCGGACGAAATCT
GCGGTCACTTGAGTCATGTTATAAATCTCAGCATTAGTGCAGGCGTCTAT
CCTGATGCCCTAAAAGTATCAATAGTTAAGCCACTATTTAAGAAAGCAGA
TAGGGAATTAATGGAGAATTATAGACCTATATCACTAATACCTGTAATTT
CTAAAATATTTGAAAAATTCATTTGCAAGGAATTAAATTCATTTATAGAA
AAACATAATATTCTATGCAAAGAACAGAAAGGATTTAGAGTGGGTAAAAC
TATTAACATGGCCATCTATGATTTTTTACATAATGTTATACATAATGTAG
ATAAGAGAAAACCGGTCTGTGGCGTATTTTGTGATATGACTCAAGCCTTT
GACTATGTACACTACGGGACACTCTTGAATAAACTTGAGACGTATGGAGT
CAGAGGAAACGTAAACAATCTCATTAAATCTTATTTAAATAACAGGACTC
AAATTACACACATAAACGCAATTGACATGAAAAGTAAACATGACAACGTG
TATCAGTCTAGAGAACGTACAGTTTCATTTGGTGTGCCACAAGGGAGTGT
TTTGGGGCCTCTCTTATTCATTTTGTATATAAATGATCTGCCAAAAGGCA
TCCCTCAACCCCTGACACTATTTGCCGATGATAGCACCATAACAATACCG
TGTGAAAGTATCGATACTTATGAGAGTGACATAAATGTATCTATAAATTT
AATGGTAAAGTGGCTAGATGATAACAATCTAAAAATTAATCTCACTAAAA
CTAAATTAATACACTTTAGTCAAAGGATCAATACCAAAAGCAGTCTCAAT
GTACACTACGCTGACCAACCTATAGAAGAGGTAGAAACAACTAAATTTTT
AGGGCTCTACATTGATAAAAAGCTAAACTGGAAGGCCCATATCGAAATCT
TATGCAGGAAGTTAAGTAAGTCTGCCTACGCCCTACACACGTTATCGTCT
ATAATAGGTGTAGAGGCATTACTTGCTGCTTACTATGGGTTAACTGAATC
CCACCTACGCTATGGTGTAATTTTCTGGGGTAACTCGGCAGAAAAAGACA
CGATTTTCAAGGCTCAAAAGAGATGCGTACGTTCATTATTTAAAATTAAA
CCCACTGATAGTTGCCTGCCATACTTTAAGAAAAATAAAATACTCACTTT
GCCATGTCTGTACATTTTAGAGGTAGCTGTATTTGTCAAAACGAATCCAC
ACCGATTTAAACTATTAAATGAAATAGTCCCACGTAACAGGCGCGATAAC
AGTAGGATATGCACGCATACTGCGAGAACTTCCCTAATGCGTAAAAGTAT
TTTCTGTATGGCGCCTGTGATATTTAATAAATTACCTAAAATTTTGAGAG
AACTACCCTTGACACATTTTAAAAATAAGCTGAGAAGGTTTTTAGTTAAT
AAAGCCTATTACAGTGTTCAGGACTTTTTGAATGAAAAAGACGTTCTAAT
TCAGACTTCGTATAACATATTTAATGGTGAAGAATAA

Coding sequence (CDS) from alignment at scaffold232:36213..40299+

>SL2000774-RA ID=SL2000774-RA|Name=SL2000774-RA|organism=Spodoptera littoralis|type=CDS|length=2409bp|location=Sequence derived from alignment at scaffold232:36213..40299+ (Spodoptera littoralis)
ATGAATTTTCTAAATAATATCACGTATAGACGCAATCGTTCTAAGTCTGA
AACATCAAATAATGATACGGTCTCGACGAACTCACCAATAGATGGCACCA
CGACCAGTTTACCTGACATTTCTGATGACGAAGATGACCAATGCACTAAG
TTAAAACAAAAATTAGAAAAATTATCTCTAGAACTCAATAGTGCCCACAA
CGAAATAGATTCTCTGACTCTAGAAAATACGCAGCTCAAACACCTTAATG
AGGAGCTACAAAAACAAAATGCTCTGTATAAAAAGGTGACATGCTCCCCT
GCCAAGCCAAGCATGCAAACACCTAAAATTAAAAAAACATCTGCAAAAAT
TAAACAGTACGCGAAAAATAACCCAAAAACGTCTAGTGAATATAAAAACA
TCACAAGTATAGCTTCGAAATCCACATTTCCAACCAATGAACAAAATCAA
TCGCAGTTAGATAAAGCGATCACAGATGGCGTTATCAGTGATTCTTGCAA
TAAAGAACAAAGAAAGACAGAAACACAATCTACGCAATTAAATTATAAAA
CTGGTTTGATAAATAAAGCAGATGATCTGTTGGTATGTCTGGAGGAGCTT
GCGAGTAAGGATACTAGTATTGATATCGTTTGTATTACAGAGCACTTTAT
CATGGATGGGTATCAGAATTTGTTGTTTTTGCCCAACTATGATTTGGCTG
CATATTATTGTAGAATAGGACAGAAACGGGGTGGTGCGTGTATCCTTGTT
AAAAATGGGTTACAATGGAAAGAATTGCCAAAAGTAGCAAAATTATCAAC
TCCAGGGATATTCGAGTGCTGTGGCGTAGAACTGACTAGTTACAAAATGA
CAATAGTTTGTATATATAGAATTCCTAACCCAAATAATTTAAATTATTGC
TTCGAGAAACTTGAAATGCTCATGCGTGAGATTTTATGTTCATCTTGTAG
AAAAATTGTTGTTTGCGGAGATTTCAACATTGATGTACTTAAGCAAAGCA
GAGAAGCGACTGAATTAGAATGTTTTTTAATGAGTTACAATATGAAACTT
GCCTTAAAAGAACCAACTCGCATGGCTAGCTTATCATGCATAGACAACTT
TGCACATAACTTTAATACATGTAAGACTGAAGTGTTTGAATGGGCGTTAT
CGGATCATACGGCACAGCTGCTTAAATGTCCCGTACAAAAACTATGCTGT
ATTAAGTATTGGTATGCAACTAGAAGGGACTACAATACGGAAAATATTAT
AAAATTTAAAAACCATCTCAAGAGTCTTACTTTTTCAGAAATTTATGAAA
CGGATGACCCAAATATAGCTTATAATTGTTTCGCCGCGATTTTCAAGTTA
CTGTACGACCTGTGTTTTCCATTTAGAGCGGTTAAAATAAATGCGATACG
ACGTACTAAGTGGGTGTCAAAAGGCATTAAATTATGCAGTAAAAAGAAAA
GAAAACTTCTATGGCAATTTCGACTAAATCGAAGCCATAATAATAAAAAC
GTATTATATAATTACTCTAAAATTTACAAAAAAATCATACGGCTAACTCA
AAAAGCACAAAACAATTACAATATAAAAACATCTGAAAACAAATCTAAAA
CCGCGTGGCAAATAATTAATCGTGCAAAGTATAACGTACCTAAATCCAAC
ATAAATAGAATTAAAATAGGTGACTGCATCATGACACATCACAGTACTAT
TGCAGAAGCATTTAATAATTTTTTCATTGATAAGGTGCAACCAAAGCAGG
GTATAGCGAGGTCTGCACCTAGGGGATTTACTGTAGACCACAATAATAAA
ACTATGTTTATGGCCCCTAGTATACCAACCGAGATTAAAAAAATAATAAT
GTCCTTAAATAATACAAGTAGTGTAGGATATGATGAGGCATTACTTGCTG
CTTACTATGGGTTAACTGAATCCCACCTACGCTATGGTGTAATTTTCTGG
GGTAACTCGGCAGAAAAAGACACGATTTTCAAGGCTCAAAAGAGATGCGT
ACGTTCATTATTTAAAATTAAACCCACTGATAGTTGCCTGCCATACTTTA
AGAAAAATAAAATACTCACTTTGCCATGTCTGTACATTTTAGAGGTAGCT
GTATTTGTCAAAACGAATCCACACCGATTTAAACTATTAAATGAAATAGT
CCCACGTAACAGGCGCGATAACAGTAGGATATGCACGCATACTGCGAGAA
CTTCCCTAATGCGTAAAAGTATTTTCTGTATGGCGCCTGTGATATTTAAT
AAATTACCTAAAATTTTGAGAGAACTACCCTTGACACATTTTAAAAATAA
GCTGAGAAGGTTTTTAGTTAATAAAGCCTATTACAGTGTTCAGGACTTTT
TGAATGAAAAAGACGTTCTAATTCAGACTTCGTATAACATATTTAATGGT
GAAGAATAA

Synonyms

The feature 'SL2000774-RA' has the following synonyms


Synonym
maker-scaffold232-snap-gene-0.22-mRNA-1

Orthology

View orthology data for SL2000774-RA