g9579.t1 (mRNA) Venturia canescens

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	g9579.t1
Unique Name	g9579.t1
Type	mRNA
Organism	Venturia canescens (vcanescens)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
g9579	g9579	Venturia canescens	gene	scaffold_257 114030..118543 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9579.t1	g9579.t1-PA	Venturia canescens	polypeptide	scaffold_257 114030..118543 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9579.t1-stop_codon	g9579.t1-stop_codon	Venturia canescens	stop_codon	scaffold_257 114030..114032 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9579.t1-CDS	g9579.t1-CDS-9	Venturia canescens	CDS	scaffold_257 114030..114097 -
g9579.t1-CDS	g9579.t1-CDS-8	Venturia canescens	CDS	scaffold_257 114297..114387 -
g9579.t1-CDS	g9579.t1-CDS-7	Venturia canescens	CDS	scaffold_257 114661..114889 -
g9579.t1-CDS	g9579.t1-CDS-6	Venturia canescens	CDS	scaffold_257 115024..115309 -
g9579.t1-CDS	g9579.t1-CDS-5	Venturia canescens	CDS	scaffold_257 115621..115768 -
g9579.t1-CDS	g9579.t1-CDS-4	Venturia canescens	CDS	scaffold_257 115853..116226 -
g9579.t1-CDS	g9579.t1-CDS-3	Venturia canescens	CDS	scaffold_257 116471..116588 -
g9579.t1-CDS	g9579.t1-CDS-2	Venturia canescens	CDS	scaffold_257 116790..116902 -
g9579.t1-CDS	g9579.t1-CDS-1	Venturia canescens	CDS	scaffold_257 118495..118543 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9579.t1-exon	g9579.t1-exon-9	Venturia canescens	exon	scaffold_257 114030..114097 -
g9579.t1-exon	g9579.t1-exon-8	Venturia canescens	exon	scaffold_257 114297..114387 -
g9579.t1-exon	g9579.t1-exon-7	Venturia canescens	exon	scaffold_257 114661..114889 -
g9579.t1-exon	g9579.t1-exon-6	Venturia canescens	exon	scaffold_257 115024..115309 -
g9579.t1-exon	g9579.t1-exon-5	Venturia canescens	exon	scaffold_257 115621..115768 -
g9579.t1-exon	g9579.t1-exon-4	Venturia canescens	exon	scaffold_257 115853..116226 -
g9579.t1-exon	g9579.t1-exon-3	Venturia canescens	exon	scaffold_257 116471..116588 -
g9579.t1-exon	g9579.t1-exon-2	Venturia canescens	exon	scaffold_257 116790..116902 -
g9579.t1-exon	g9579.t1-exon-1	Venturia canescens	exon	scaffold_257 118495..118543 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9579.t1-intron	g9579.t1-intron	Venturia canescens	intron	scaffold_257 116903..118494 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9579.t1-start_codon	g9579.t1-start_codon	Venturia canescens	start_codon	scaffold_257 118541..118543 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold_257:114030..118543-
coding sequence from alignment at scaffold_257:114030..118543-

spliced messenger RNA

>g9579.t1 ID=g9579.t1|Name=g9579.t1|organism=Venturia canescens|type=mRNA|length=1476bp|location=Sequence derived from alignment at scaffold_257:114030..118543- (Venturia canescens)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACCATGACGCACAGTAGGAAACGTGTTTGTTACTATTACGACAG
TGATATTGGAAACTATTACTATGGGCAAGGACATCCGATGAAGCCACATC
GCATAAGGATGACACACAATTTGCTGTTGAATTATGGCCTCTACAGAAAA
ATGGAAATTTATCGTCCTCACAAAGCCACGGCCGATGAAATGACGAAATT
CCACAGCGACGAGTACATCAGATTCTTGAGATCGATTAGACCAGATAACA
TGGCAGAGTACAACAAACAAATGCAGAGATTCAACGTCGGAGAAGATTGT
CCAGTTTTTGATGGACTCTACGAGTTTTGTCAACTCTCAGCCGGTGGTTC
GGTTGCCGCAGCTGTCAAATTGAACAAGCAAGCCTCCGAAATCTGCATCA
ACTGGGGAGGAGGCTTGCACCACGCGAAAAAGAGCGAAGCCTCAGGTTTC
TGCTACGTCAATGACATCGTTCTCGGGATATTGGAGCTGCTTAAATACCA
CCAGAGAGTTTTGTACATCGACATCGATGTGCATCATGGCGACGGGGTCG
AGGAGGCTTTTTATACAACGGATCGTGTCATGACCGTTTCTTTTCATAAA
TACGGCGAATATTTTCCGGGAACTGGAGATTTGCGCGACATTGGAGCCGG
AAAGGGAAAGTACTACGCTGTCAACATTCCGTTGAGGGATGGCATGGATG
ACGAGAGCTACGAGTCCATTTTCGTACCAATCATTTCCAAAGTCATGGAA
ACTTTCCAACCTTCCGCTGTCGTTCTCCAATGCGGCGCGGACTCGTTGAC
TGGCGACCGGTTGGGATGTTTCAACCTGACGGTTCGTGGCCACGGCAAAT
GTGTAGAATTTGTGAAAAAATACAATTTGCCATTTTTGATGGTTGGCGGT
GGTGGTTACACGATCAGAAACGTTTCGAGATGTTGGACGTACGAAACTTC
GGTCGCCCTCGGCTCCGAAATCGCCAACGAACTGCCCTACAACGATTACT
TTGAATATTTCGGACCTGACTTCAAACTCCACATCAGCCCTTCGAATATG
GCAAACCAAAACACCATAGAATATTTGGAAAAAATTAAAACGAGGTTATT
CGAAAATTTGAGGATGTTGCCACACGCACCAGGAGTCCAAGTCCAAGCGA
TTCCCGAGGATGGGGCAACGGTCGAGGACTCTGAAGCCGAGGAAAAAATA
AACCCGGATGAAAGATTACCACAACGAGATTTAGACAAAAGGATACAACA
CGAAAACGAGTACAGTGATAGCGAGGACGAGGGCGACGGTGGTCGTCGAG
ATAATCGATCTTTCAAGGGCTCGCGTAAGCGGCCGAGACTGGACAAAACG
CAGGAAGGAATCGATGGAGACATGAAAAAAGAGGACGACATAAAATCCGA
AGTAAAAGACGAAAAAGACGAAAAGTCGAACGCGATGAATGACGAGGCGA
AGAAAGACGGTAGTGGGAATCCCTGA

protein sequence of g9579.t1

>g9579.t1-PA ID=g9579.t1-PA|Name=g9579.t1|organism=Venturia canescens|type=polypeptide|length=491bp
MSTMTHSRKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRK
MEIYRPHKATADEMTKFHSDEYIRFLRSIRPDNMAEYNKQMQRFNVGEDC
PVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGF
CYVNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHK
YGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVME
TFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKKYNLPFLMVGG
GGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLHISPSNM
ANQNTIEYLEKIKTRLFENLRMLPHAPGVQVQAIPEDGATVEDSEAEEKI
NPDERLPQRDLDKRIQHENEYSDSEDEGDGGRRDNRSFKGSRKRPRLDKT
QEGIDGDMKKEDDIKSEVKDEKDEKSNAMNDEAKKDGSGNP

mRNA from alignment at scaffold_257:114030..118543-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>g9579.t1 ID=g9579.t1|Name=g9579.t1|organism=Venturia canescens|type=mRNA|length=4514bp|location=Sequence derived from alignment at scaffold_257:114030..118543- (Venturia canescens)
ATGTCGACCATGACGCACAGTAGGAAACGTGTTTGTTACTATTACGACAG
TAAGTAGAAAAAGTGCATTTATTTTTCCTTTTCATACTTTTTATTACATC
TCAATGGATTTTCTCCGCGGAAAACCCATGTACAAATGTTTATTGCATGT
TATGATAAGTAATCCCGCGAAAAACCGAGACCGCGCGGGGGCGGCAAATG
GCAGTGTTCAGACATGTCTGTGTGTACGTGTGTTCACAATGCGAGTCGAC
AATCACGTATACCACATCCAATTTTCTTCTCGATTATCTGCTTCCCGCAT
TTCTTTTTTAATTCTATTTTGTAATGAAAACCTTACCGGTGTACAGAATT
TTCAAAATGAGCACAAAAATTCTGTTACCAGCTTTCTTTCTTTCGTTTTT
ATTGTTTCCGTGACGTTAACGTGAGAGATTCTCAAGCAGGAATTCGCGCG
ACCGTAGTTAAGGAAATAAAGCCAAGCGTCCGCCATGCTTACTGCGTGAC
CGTAGGTCACTTGAGAATCTCTCGCCTTATGTTACTATTTTTCCTAAAAA
TTGACGTATTCTGACTAAAAATGATAAAAATTTATGAAATTCGTGTTCCT
CGATAAGTTTTCTTTAAAATCGCTGCTTGCTCACACTTTCTTTTACATTT
TCATCTCGACTTTTTGAACTTTCGAGTTTGTGTTTTGTTCTCGCGTTCCG
TGAGGCATTTTGGAGCGAATGCTTTCTTTTTCTCCGCAACACGCCTTTGT
CCTTATTTTTCGAACGTTTCATTCCTTTTTACTTCAGCTCGTCAAATTTT
CAAGTTGATTTCCCATTGCCGAAATTTGGGAATCACTTTTCTCTCGATTT
TTGGTAACGTCGTACACATACGTTTTCCGTGACATTGAAATTTGCATTCT
TAAAATTCTACCAAAAAAACGTATTTCATATAAAAATCAAATTTCACCAT
ACTTTTTCATTCATTTTTCTTCATAATTCCATATATTTGACATTTTTTAA
TCAAGAGATTTAAAATATTGAAAAATAAAGCTGTGACATGTTTACTAAAC
TTTTTTCGTGCTTTGTGGAACGAGTTTGATGGATATTCTGATCGTGCATT
AAGTTTTTCTGCAAACGTTACCCTCTGGTCAGGATTTAAATAAAAACTTT
TGGAAACTCAATGAAAAATCAATCATTTTCAACGATTTGCATGTTTATGT
CAAAAAATTGAACTGAAAAATGAAAACATCTTAAAAAATGAACAAATTTA
GTTCGTACAACAAATTAACCAATTAATTATCACGTAATCTTTTATTTGTA
CAATTTTCCTGTAATTTTACACAATTCCAAATTTGTCTGAATTTGAAGCA
AAGATTCTGACTAAATAAAATTGTTAGCATCAACATTTGTGCAATTCATT
GTAAAAAAATTTGTACATAAATTCATACTTGCAATGCAGATGCACAATTG
TTAATTTATTAGACTGACAGCAATGGTTATGCTATCAGAACATGACTTTG
ACCAGATTTTCCACAGTTTTCTATGACTCGAGAGTCACAAGTGTCATTGC
AAGCAGTGAATTAAAAATGAGTGGCCATGGCACTAGGAAATTTTGCAATA
CCGCAAACAACGGTATTCATTCGTTGCATAATTTTTCTCAGGTGATATTG
GAAACTATTACTATGGGCAAGGACATCCGATGAAGCCACATCGCATAAGG
ATGACACACAATTTGCTGTTGAATTATGGCCTCTACAGAAAAATGGAAAT
TTATGTGAGTAAAATAAAAATGGATAACACACGACATTCATCTTCTCATA
TGCTGAGATACAGTTCCAAAAATGTGTCAAATAAACTGTCCAGACTGGCA
CCCTCCGTTTGCACGTATTCAAATAACTTTTTGTTTCATTATTGTTGAGA
AGATTGAGTCGTTATAACGCATGAAATAAAAATAATGGAATTTTGAAATT
TCTAGCGTCCTCACAAAGCCACGGCCGATGAAATGACGAAATTCCACAGC
GACGAGTACATCAGATTCTTGAGATCGATTAGACCAGATAACATGGCAGA
GTACAACAAACAAATGCAGAGATGTAAGTTGTACTTTACTTCATATCTGG
CTTCAGGATATTACTAGGAGGGGGGAGGGTTCTTTTGACCCAAAAGTAAC
CAAAAACTGAAAAAAAATTAAAATGTGAAAAAAATAGAAAAAGCTACTAA
AATTAAATGATGGTGTATCTTTCAGGGTTTCAGTGGATAAAAAATGTAAA
ATTTGATAATTCTAGGCTTTAATTTGCCAAAAACTCAATGATGATTTCCG
ATTTATCCTTTGTGCAGTCAACGTCGGAGAAGATTGTCCAGTTTTTGATG
GACTCTACGAGTTTTGTCAACTCTCAGCCGGTGGTTCGGTTGCCGCAGCT
GTCAAATTGAACAAGCAAGCCTCCGAAATCTGCATCAACTGGGGAGGAGG
CTTGCACCACGCGAAAAAGAGCGAAGCCTCAGGTTTCTGCTACGTCAATG
ACATCGTTCTCGGGATATTGGAGCTGCTTAAATACCACCAGAGAGTTTTG
TACATCGACATCGATGTGCATCATGGCGACGGGGTCGAGGAGGCTTTTTA
TACAACGGATCGTGTCATGACCGTTTCTTTTCATAAATACGGCGAATATT
TTCCGGGAACTGGAGATTTGCGCGACATTGGAGCCGGAAAGGTGAGAATT
TTGTGGTTTTCATATTTTTTCGTAATTTTTTCTCCCAAATTTTCGCTTTC
ATTGATTTTCTTGTACCTTCTTCAGGGAAAGTACTACGCTGTCAACATTC
CGTTGAGGGATGGCATGGATGACGAGAGCTACGAGTCCATTTTCGTACCA
ATCATTTCCAAAGTCATGGAAACTTTCCAACCTTCCGCTGTCGTTCTCCA
ATGCGGCGCGGACTCGTTGACTGGTACTGTCCCTTTTCCCAAGCGATTAA
TCGTCTTCGTTTCAAGTGTCGGAGCTTCGTCGTAAAAGTTTAATGTCCAG
TTTGAAAAAAGACTGAATTTGTTTCTTTCCGAACAAAATTTATTTTCCAC
TTTATTGAGACAAATTTCGAGTTTTTCCTCGCACAATGGGGAACGAAATT
TTGAAGCTTTTCTCGTCACAAAAATGAGGCTTGAATATTGTCTCGAGAAA
AAAAAACAAAAAACAAAAAAACAACTCCAGTTCATAAAAATTCGTAAATC
TAACAGATTTTTTGAATTTTTCGAATAAAAACAGGCGACCGGTTGGGATG
TTTCAACCTGACGGTTCGTGGCCACGGCAAATGTGTAGAATTTGTGAAAA
AATACAATTTGCCATTTTTGATGGTTGGCGGTGGTGGTTACACGATCAGA
AACGTTTCGAGATGTTGGACGTACGAAACTTCGGTCGCCCTCGGCTCCGA
AATCGCCAACGAACTGCCCTACAACGATTACTTTGAATATTTCGGACCTG
ACTTCAAACTCCACATCAGCCCTTCGAATATGGCAAACCAAAACACCATA
GAATATTTGGAAAAAATTAAGTTAGTTTAAAAAATTGAATAATCACATTT
CCTCGTACGATTTTCCATTTTTTCAACCATTTTCTCGCTCATTTTATTAC
AAAATTCAAACTAATTGTGCAGTTATTCATTTTGTACCATTTTTTTTTGT
TTAGAACGAGGTTATTCGAAAATTTGAGGATGTTGCCACACGCACCAGGA
GTCCAAGTCCAAGCGATTCCCGAGGATGGGGCAACGGTCGAGGACTCTGA
AGCCGAGGAAAAAATAAACCCGGATGAAAGATTACCACAACGAGATTTAG
ACAAAAGGATACAACACGAAAACGAGTACAGTGATAGCGAGGACGAGGGC
GACGGTGGTCGTCGAGATAATCGATCTTTCAAGGTAGATAAAACTAATTC
GATTGAATTTGATTGAGAAAAAATGATGAAGATGAAGCTTCAGTCGAATC
ACTCGATCAAAAGTTCGAAAATGATTTCAAATTATTTCGCTCAACTGTTG
ACGATCGTAATTTATTCAATATCATTTCCATTCTCACTAAATCGATTCTC
GATTTAAATAATATTTTGTGAAATATTGAAAATATTTTTATTTCATATTT
GATCGTGAATGTTTATAAAAATGTATTAAAAGAAATGGAATTTTCAACAT
TTTCAGGGCTCGCGTAAGCGGCCGAGACTGGACAAAACGCAGGAAGGAAT
CGATGGAGACATGAAAAAAGAGGACGACATAAAATCCGAAGTAAAAGGTA
AAATTTTGAGGATTTAAAGATTCGGTGAAAAGGCTGGTTTTGTAACAAAT
TTTGTTTTCGAGCAAATTCATTTTCTAAATAAAAATGTAAAAAAGAGTTT
TTTGAAAGCTTATCAGAAAAAAATCAACGGATATTCGTCGACGGAGCAAA
GAATTTATGATTTTTCTATGAAATCAAATCGATATTTTGTTTGCAGACGA
AAAAGACGAAAAGTCGAACGCGATGAATGACGAGGCGAAGAAAGACGGTA
GTGGGAATCCCTGA

Coding sequence (CDS) from alignment at scaffold_257:114030..118543-

>g9579.t1 ID=g9579.t1|Name=g9579.t1|organism=Venturia canescens|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_257:114030..118543- (Venturia canescens)
ATGTCGACCATGACGCACAGTAGGAAACGTGTTTGTTACTATTACGACAG
TGATATTGGAAACTATTACTATGGGCAAGGACATCCGATGAAGCCACATC
GCATAAGGATGACACACAATTTGCTGTTGAATTATGGCCTCTACAGAAAA
ATGGAAATTTATCGTCCTCACAAAGCCACGGCCGATGAAATGACGAAATT
CCACAGCGACGAGTACATCAGATTCTTGAGATCGATTAGACCAGATAACA
TGGCAGAGTACAACAAACAAATGCAGAGATTCAACGTCGGAGAAGATTGT
CCAGTTTTTGATGGACTCTACGAGTTTTGTCAACTCTCAGCCGGTGGTTC
GGTTGCCGCAGCTGTCAAATTGAACAAGCAAGCCTCCGAAATCTGCATCA
ACTGGGGAGGAGGCTTGCACCACGCGAAAAAGAGCGAAGCCTCAGGTTTC
TGCTACGTCAATGACATCGTTCTCGGGATATTGGAGCTGCTTAAATACCA
CCAGAGAGTTTTGTACATCGACATCGATGTGCATCATGGCGACGGGGTCG
AGGAGGCTTTTTATACAACGGATCGTGTCATGACCGTTTCTTTTCATAAA
TACGGCGAATATTTTCCGGGAACTGGAGATTTGCGCGACATTGGAGCCGG
AAAGGGAAAGTACTACGCTGTCAACATTCCGTTGAGGGATGGCATGGATG
ACGAGAGCTACGAGTCCATTTTCGTACCAATCATTTCCAAAGTCATGGAA
ACTTTCCAACCTTCCGCTGTCGTTCTCCAATGCGGCGCGGACTCGTTGAC
TGGCGACCGGTTGGGATGTTTCAACCTGACGGTTCGTGGCCACGGCAAAT
GTGTAGAATTTGTGAAAAAATACAATTTGCCATTTTTGATGGTTGGCGGT
GGTGGTTACACGATCAGAAACGTTTCGAGATGTTGGACGTACGAAACTTC
GGTCGCCCTCGGCTCCGAAATCGCCAACGAACTGCCCTACAACGATTACT
TTGAATATTTCGGACCTGACTTCAAACTCCACATCAGCCCTTCGAATATG
GCAAACCAAAACACCATAGAATATTTGGAAAAAATTAAAACGAGGTTATT
CGAAAATTTGAGGATGTTGCCACACGCACCAGGAGTCCAAGTCCAAGCGA
TTCCCGAGGATGGGGCAACGGTCGAGGACTCTGAAGCCGAGGAAAAAATA
AACCCGGATGAAAGATTACCACAACGAGATTTAGACAAAAGGATACAACA
CGAAAACGAGTACAGTGATAGCGAGGACGAGGGCGACGGTGGTCGTCGAG
ATAATCGATCTTTCAAGGGCTCGCGTAAGCGGCCGAGACTGGACAAAACG
CAGGAAGGAATCGATGGAGACATGAAAAAAGAGGACGACATAAAATCCGA
AGTAAAAGACGAAAAAGACGAAAAGTCGAACGCGATGAATGACGAGGCGA
AGAAAGACGGTAGTGGGAATCCCTGA