Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|
| Venturia canescens OGS 1.1 20190131 | 2019-01-31 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9580 | g9580 | Venturia canescens | gene | scaffold_257 120928..123178 + |
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9580.t1-start_codon | g9580.t1-start_codon | Venturia canescens | start_codon | scaffold_257 120928..120930 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9580.t1-intron | g9580.t1-intron | Venturia canescens | intron | scaffold_257 122895..123045 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9580.t1-stop_codon | g9580.t1-stop_codon | Venturia canescens | stop_codon | scaffold_257 123176..123178 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >g9580.t1 ID=g9580.t1|Name=g9580.t1|organism=Venturia canescens|type=mRNA|length=1422bp|location=Sequence derived from alignment at scaffold_257:120928..123178+ (Venturia canescens)|Notes=Excludes all bases but those of type(s): exon.
ATGTCGAATCGCCGAGGGACCGACGGATCTTCATCCCCGTCGGTCGAACC
TAAGGACAAAAACAATTTCAGTTTAACAAGCAGTAATCATTCCTCTCGGG
ATAATAACCTACGAAGTCGCGACGAAATCGACAATTTAACAGGTTCAACG
GCAGAAGGACCTTCCAGAGAGTCACGACGGGATGAGAATCCCTTCAGTTT
CAAACACTTTTTGAAGAAAGATACAAGGCCAAATTACAATTTGTCAGGGG
CTCGCCCGAAGGTCTATTCCTCAGCGCGTATGAGCCCCTCGAACGTTGGT
TCGGAAGTGGATTCAAAATATCCCTGCAATCCAACAGAGTTGCCTGACTT
TGTCCAGGACCATTTGGTCATCGAGCAGTGCTATCTGAACACAGAAGCAG
CGGCGTCGGGCACCGCAACTGTTCCTCTTGTCGCGGACATTGACAATTTG
CCCGACTTCACAATAAACAATGCGGAACGCCGCCAGGCTGCAAGATGCTC
CAGAAACGATACCGAAAAACCACAAATCTCGTGCGACCTGCCCTTTGACC
TTACCGGTGGTTTGGAACGAAGAAAACAGCGCATCAATCCAGGCTCTGAT
AACGGAGCCTGCAATAATCCACCCACGGGTTTCCCTAGACCCAACCAACT
GCCCGTCCGTCAAAATGAATCTGCGAGGAATATCGAGGCGTTTCCTTTCG
ATTTGCCATCTTCTATCGCTGGTTCCAGTCTCTCCGATCCTTTGAGACCC
AGCGATTCACCGGCCAATGAAAACAGCATCAATAAATCTCTTCCAGACTT
CTTGAACGATGGACCCATCCGCAATCGTGTCGCCGGGGAAAATGACTCGT
CTTTGGTTTTGCCGGAAAGAACTGACAACGGTCACTTGGCGCTGGAAAAC
GAGAGATTAAGGGAAGAGCTCAAAGTCGCCAGGCGACACATCGCAGAAAA
AATGAGGATGATAGAATCTCTCAAAGCCGAATTGTCCTCGAGGAAGGAAG
CTGATCAGGACGAAACTGCACATTTGGAAAAAGCTATGGAACAGGTTGAA
GTTAATCTGAAGCGAAGTACAAAGAGAGCAAATAGCGCAGAAAGCGCAGT
GACGTTATTGAAACAGGAAGTGAAAGTCTTGACGGAAGAGGTGTCGATAC
TGCGATCAGAAAACCGGGAATTGAGGAGCTTAGCTGGAACAGGCTGCTCC
GATTATCGATTTCCAGGCTCTGACAGAAGAATTAAAAAATTGAGCGACGA
GCTCCGAGCTGCTGCGATGTCAGCCGAGGGGTCTCTCAGGCAATTGATGT
CGGGAGTGAACAATTTGAAAGTCATGGCAACAACGTTGGAAAACATCGAC
AGGATAGAGGACAGAACCAAAGACTATTTTCCTGATTTCGAGGAAGAAAA
CGCTGCTGGTCCGGCGTTATAG back to topprotein sequence of g9580.t1 >g9580.t1-PA ID=g9580.t1-PA|Name=g9580.t1|organism=Venturia canescens|type=polypeptide|length=473bp
MSNRRGTDGSSSPSVEPKDKNNFSLTSSNHSSRDNNLRSRDEIDNLTGST
AEGPSRESRRDENPFSFKHFLKKDTRPNYNLSGARPKVYSSARMSPSNVG
SEVDSKYPCNPTELPDFVQDHLVIEQCYLNTEAAASGTATVPLVADIDNL
PDFTINNAERRQAARCSRNDTEKPQISCDLPFDLTGGLERRKQRINPGSD
NGACNNPPTGFPRPNQLPVRQNESARNIEAFPFDLPSSIAGSSLSDPLRP
SDSPANENSINKSLPDFLNDGPIRNRVAGENDSSLVLPERTDNGHLALEN
ERLREELKVARRHIAEKMRMIESLKAELSSRKEADQDETAHLEKAMEQVE
VNLKRSTKRANSAESAVTLLKQEVKVLTEEVSILRSENRELRSLAGTGCS
DYRFPGSDRRIKKLSDELRAAAMSAEGSLRQLMSGVNNLKVMATTLENID
RIEDRTKDYFPDFEEENAAGPAL back to topmRNA from alignment at scaffold_257:120928..123178+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >g9580.t1 ID=g9580.t1|Name=g9580.t1|organism=Venturia canescens|type=mRNA|length=2251bp|location=Sequence derived from alignment at scaffold_257:120928..123178+ (Venturia canescens)
ATGTCGAATCGCCGAGGGACCGACGGATCTTCATCCCCGTCGGTCGAACC
TAAGGACAAAAACAATTTCAGTTTAACAAGCAGTAATCATTCCTCTCGGG
ATAATAACCTACGAAGTCGCGACGAAATCGACAATTTAACAGGTGAAAAG
ATAAAAATTCCTTCATTTCTACTGACACCCGAATAAAAGAACGAACTTTT
TCAAAAAAATGTCAATTTATTTAAAAAAACAATCATTTTATATTTCAATT
TTGCATAAAAACATTTTTGCTCTCAGAACTTGGGAAATTCATTAATTTTT
TCACTTCAAGATCCAATCAATATTAGTCAATTTCATGAACCTTGGAATCA
CACTCCCACAGACTCGGTTATCATCCTTCCGTAGCCTCCTTCGAAAGCTC
TCGGGTCTCTTGGACCCGAATAGAGAAAAATTCTACCATGGAAAATGAAT
GATAAAGGTTAGAATCAATTCAAATGAAAAAATTAATTTCTGACAGGTTC
AACGGCAGAAGGACCTTCCAGAGAGTCACGACGGGATGAGAATCCCTTCA
GTTTCAAACACTTTTTGAAGAAAGATACAAGGCCAAATTACAATTTGTCA
GGGGCTCGCCCGAAGGTCTATTCCTCAGCGCGTATGAGCCCCTCGAACGT
TGGTTCGGAAGTGGATTCAAAATATCCCTGCAATCCAACAGAGTTGCCTG
ACTTTGTCCAGGACCATTTGGTCATCGAGCAGTGCTATCTGAACACAGAA
GCAGCGGCGTCGGGCACCGCAACTGTTCCTCTTGTCGCGGACATTGACAA
TTTGCCCGACTTCACAATAAACAATGCGGAACGCCGCCAGGCTGCAAGAT
GCTCCAGAAACGATACCGAAAAACCACAAATCTCGTGCGACCTGCCCTTT
GACCTTACCGGTGGTTTGGAACGAAGAAAACAGCGCATCAATCCAGGCTC
TGATAACGGAGCCTGCAATAATCCACCCACGGGTTTCCCTAGACCCAACC
AACTGCCCGTCCGTCAAAATGAATCTGCGAGGAATATCGAGGCGTTTCCT
TTCGATTTGCCATCTTCTATCGCTGGTTCCAGTCTCTCCGATCCTTTGAG
ACCCAGCGATTCACCGGCCAATGAAAACAGCATCAATAAATCTCTTCCAG
ACTTCTTGAACGATGGACCCATCCGCAATCGTGTCGCCGGGGAAAATGAC
TCGTCTTTGGTTTTGCCGGAAAGAACTGACAACGGTGTAAGCCATTATTC
CCTCCTCTTTTCACCTCTCATCGCTTCCAGCTTCATTTATTTTTCATTTT
AAAGCACTTGGCGCTGGAAAACGAGAGATTAAGGGAAGAGCTCAAAGTCG
CCAGGCGACACATCGCAGAAAAAATGAGGATGTGAGTACACCGTTGAATT
TCGTTTAACAAAAGACTCGATTTTTACGATCGTTTCCTCGATCTGGGAAT
AAAAATTGTTTTTTCCCATCTCAGGATAGAATCTCTCAAAGCCGAATTGT
CCTCGAGGAAGGAAGCTGATCAGGACGAAACTGCACATTTGGAAAAAGCT
ATGGAACAGGTTGAAGTTAATCTGAAGCGAAGTACAGTGAGTTTGAATTT
CTCTCGATTCTTTAAGGATTTACCGACTCAAAGAATCCTGAGTTCAATGT
ACGTTTCTTGGATTTTCAGAAGAGAGCAAATAGCGCAGAAAGCGCAGTGA
CGTTATTGAAACAGGAAGTGAAAGTCTTGACGGTGAGCCATTGCCAAAGT
TTTTCCAGTTTTTTCTTTTCGTGCTCTCATTCGTTTTTCTCAAACGTTTT
TTTCCTTGGCAGGAAGAGGTGTCGATACTGCGATCAGAAAACCGGGAATT
GAGGAGCTTAGCTGGAACAGGCTGCTCCGATTATCGATTTCCAGGCTCTG
ACAGAAGAATTAAAAAATTGAGCGACGAGCTCCGAGCTGCTGCGATGTCA
GCCGAGGGGTCTCTCAGGTCCATTAACAATTCAGCATTACAAATAAAAAA
AACGTTCCATGGGAAATTCGTTTTTAGTTTTTTAAGTTCATCAAAAATTG
AGAATAATTTAGAATCTCAAAGATAATTTGATGAAAAATGATAAATTAAT
ATTTGTTATTCCATCCAGGCAATTGATGTCGGGAGTGAACAATTTGAAAG
TCATGGCAACAACGTTGGAAAACATCGACAGGATAGAGGACAGAACCAAA
GACTATTTTCCTGATTTCGAGGAAGAAAACGCTGCTGGTCCGGCGTTATA
G back to topCoding sequence (CDS) from alignment at scaffold_257:120928..123178+ >g9580.t1 ID=g9580.t1|Name=g9580.t1|organism=Venturia canescens|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_257:120928..123178+ (Venturia canescens)
ATGTCGAATCGCCGAGGGACCGACGGATCTTCATCCCCGTCGGTCGAACC
TAAGGACAAAAACAATTTCAGTTTAACAAGCAGTAATCATTCCTCTCGGG
ATAATAACCTACGAAGTCGCGACGAAATCGACAATTTAACAGGTTCAACG
GCAGAAGGACCTTCCAGAGAGTCACGACGGGATGAGAATCCCTTCAGTTT
CAAACACTTTTTGAAGAAAGATACAAGGCCAAATTACAATTTGTCAGGGG
CTCGCCCGAAGGTCTATTCCTCAGCGCGTATGAGCCCCTCGAACGTTGGT
TCGGAAGTGGATTCAAAATATCCCTGCAATCCAACAGAGTTGCCTGACTT
TGTCCAGGACCATTTGGTCATCGAGCAGTGCTATCTGAACACAGAAGCAG
CGGCGTCGGGCACCGCAACTGTTCCTCTTGTCGCGGACATTGACAATTTG
CCCGACTTCACAATAAACAATGCGGAACGCCGCCAGGCTGCAAGATGCTC
CAGAAACGATACCGAAAAACCACAAATCTCGTGCGACCTGCCCTTTGACC
TTACCGGTGGTTTGGAACGAAGAAAACAGCGCATCAATCCAGGCTCTGAT
AACGGAGCCTGCAATAATCCACCCACGGGTTTCCCTAGACCCAACCAACT
GCCCGTCCGTCAAAATGAATCTGCGAGGAATATCGAGGCGTTTCCTTTCG
ATTTGCCATCTTCTATCGCTGGTTCCAGTCTCTCCGATCCTTTGAGACCC
AGCGATTCACCGGCCAATGAAAACAGCATCAATAAATCTCTTCCAGACTT
CTTGAACGATGGACCCATCCGCAATCGTGTCGCCGGGGAAAATGACTCGT
CTTTGGTTTTGCCGGAAAGAACTGACAACGGTCACTTGGCGCTGGAAAAC
GAGAGATTAAGGGAAGAGCTCAAAGTCGCCAGGCGACACATCGCAGAAAA
AATGAGGATGATAGAATCTCTCAAAGCCGAATTGTCCTCGAGGAAGGAAG
CTGATCAGGACGAAACTGCACATTTGGAAAAAGCTATGGAACAGGTTGAA
GTTAATCTGAAGCGAAGTACAAAGAGAGCAAATAGCGCAGAAAGCGCAGT
GACGTTATTGAAACAGGAAGTGAAAGTCTTGACGGAAGAGGTGTCGATAC
TGCGATCAGAAAACCGGGAATTGAGGAGCTTAGCTGGAACAGGCTGCTCC
GATTATCGATTTCCAGGCTCTGACAGAAGAATTAAAAAATTGAGCGACGA
GCTCCGAGCTGCTGCGATGTCAGCCGAGGGGTCTCTCAGGCAATTGATGT
CGGGAGTGAACAATTTGAAAGTCATGGCAACAACGTTGGAAAACATCGAC
AGGATAGAGGACAGAACCAAAGACTATTTTCCTGATTTCGAGGAAGAAAA
CGCTGCTGGTCCGGCGTTATAG back to top
|