Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|
| Venturia canescens OGS 1.1 20190131 | 2019-01-31 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9581 | g9581 | Venturia canescens | gene | scaffold_257 124692..126536 - |
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9581.t1-stop_codon | g9581.t1-stop_codon | Venturia canescens | stop_codon | scaffold_257 124692..124694 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9581.t1-CDS | g9581.t1-CDS-3 | Venturia canescens | CDS | scaffold_257 124692..125778 - |
| g9581.t1-CDS | g9581.t1-CDS-2 | Venturia canescens | CDS | scaffold_257 125902..126113 - |
| g9581.t1-CDS | g9581.t1-CDS-1 | Venturia canescens | CDS | scaffold_257 126261..126536 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9581.t1-exon | g9581.t1-exon-3 | Venturia canescens | exon | scaffold_257 124692..125778 - |
| g9581.t1-exon | g9581.t1-exon-2 | Venturia canescens | exon | scaffold_257 125902..126113 - |
| g9581.t1-exon | g9581.t1-exon-1 | Venturia canescens | exon | scaffold_257 126261..126536 - |
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9581.t1-intron | g9581.t1-intron | Venturia canescens | intron | scaffold_257 126114..126260 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9581.t1-start_codon | g9581.t1-start_codon | Venturia canescens | start_codon | scaffold_257 126534..126536 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >g9581.t1 ID=g9581.t1|Name=g9581.t1|organism=Venturia canescens|type=mRNA|length=1575bp|location=Sequence derived from alignment at scaffold_257:124692..126536- (Venturia canescens)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGGAAATTAACAACGAAAATTCGAAAGATATTAAAATAGTTTGCCC
CAAGGCAGAGGAGCTCAGTGTTATTGTAAACAAAGTAAGATGCGAGGAAT
GTGGTTTGACATTCAGCAACGAGCCCCGACTCCGTATGCACGTGTTGAAA
ATTCACGAGCACAAAAATCTCATAAAAAACATCAAAGAAAACGTTCGTTA
CCATTGTCCCGAAAATACTTGCGTTTATGCCCTTACGTCACAACGCTTTT
TTACGACAATGAAATACTTGAAACAGCACTACTTAAAAGTGCACGCAGCT
AAAAAATTTGGCTGTGATCAATGCGACAAGAGTTTTTCTACTGAAGCAGC
AAGAATAGCTCATTCGAGGGTTTGCGGAGTGGAATTCACTTGTGGTTGTT
TGAGAGTATTCGGCACTTACGAAGCTCTGCTTACTCATTGCAAAAGAGCT
TCTCACACAGTGGACCAGAAGTACAAAAAAGCTGTTAATCGTAAGCCACA
AGGAAAAAGTTCACAGCCGACTAAACCGGTCTCGATATCCAGTTCTCAGA
GTTTAAGCAAGCCGGTGATGATTTTGCCATTGCGAACAAGTTATTTTATG
CCAGCAAACACAGCGAAAATATCATTTGACGTTGCTGTGCAAACGGACGA
TTTGAAACGTCAGAAAAGAACACAGAGCCCGTCCAAGAGTTGCAAGCGTC
GGGAATCTCGTCAGACTCAAACACAGATTTTGTCAAAAGAAAAGCGTTTG
AGAAAAACTGTGGAGACACAAACAACGAGGAATTCGTTGAAGCCTGCTGT
GAGGAGGAAACATTCGAAAGTGGATTTGACGCTGCCAGAAAACTTTGCTA
CGGACAATTTATTTTCTCCCAGTACTTTAGAACTGGGAGACGAAGTTGCT
CTGGAAGATTTGTGGGGAGAAAAAAATGCTTCGTTGGGAACGCAAACGAG
TCCGGATAAGGATTTGCTCGAGGCCCTCAGCGACAGCGTCACACAAACCG
ATCTCGTTACCTTCTACACTCCGGATCAAGGAAATTGTCTAAACATCGTT
GAAAACTCTTGTTACTCCTACGAAGACAATACTCGAGGGATATCTTCGAG
ATCAGATCCAATGTTGACTATCGATAGCTTCACCGATCGCTTCAGCAGCA
TAGAAACCCAAACAGAAACAATTTCGAGCAACTCCACTCCGCTCATCTCT
TCGAGCGACAGTTTTTTCGAAAATGAACTCGTCGCTTCAAGAAATTTTGC
TCTCAGCTCCAACAATGAGACTCAAACCACTGAGAACTTTCACAATATCG
AGCAACTCCTTTACAGCAACAATTACACACAAACCTGCAACGATATACTT
CGAGCCTCGGATCTTGGACTCTCTGATATTCAGACCCAAACCGCTTGGCC
CGAGCTCGTCCACGACTCCAATTCAATTTCCGCTAAAACTCAAACCCGCA
CAACTCAGGCTCCCAATCTCCAGTCTGGGGTTTCTAATTCTTCGGAAAAA
TCGTGGCTCAACACAAGAATCAGTCACACCGAAACTCAAACTGACTTGTT
AAGCATCTTCGACGAGTTTCCGTGA back to topprotein sequence of g9581.t1 >g9581.t1-PA ID=g9581.t1-PA|Name=g9581.t1|organism=Venturia canescens|type=polypeptide|length=524bp
MEEINNENSKDIKIVCPKAEELSVIVNKVRCEECGLTFSNEPRLRMHVLK
IHEHKNLIKNIKENVRYHCPENTCVYALTSQRFFTTMKYLKQHYLKVHAA
KKFGCDQCDKSFSTEAARIAHSRVCGVEFTCGCLRVFGTYEALLTHCKRA
SHTVDQKYKKAVNRKPQGKSSQPTKPVSISSSQSLSKPVMILPLRTSYFM
PANTAKISFDVAVQTDDLKRQKRTQSPSKSCKRRESRQTQTQILSKEKRL
RKTVETQTTRNSLKPAVRRKHSKVDLTLPENFATDNLFSPSTLELGDEVA
LEDLWGEKNASLGTQTSPDKDLLEALSDSVTQTDLVTFYTPDQGNCLNIV
ENSCYSYEDNTRGISSRSDPMLTIDSFTDRFSSIETQTETISSNSTPLIS
SSDSFFENELVASRNFALSSNNETQTTENFHNIEQLLYSNNYTQTCNDIL
RASDLGLSDIQTQTAWPELVHDSNSISAKTQTRTTQAPNLQSGVSNSSEK
SWLNTRISHTETQTDLLSIFDEFP back to topmRNA from alignment at scaffold_257:124692..126536- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >g9581.t1 ID=g9581.t1|Name=g9581.t1|organism=Venturia canescens|type=mRNA|length=1845bp|location=Sequence derived from alignment at scaffold_257:124692..126536- (Venturia canescens)
ATGGAGGAAATTAACAACGAAAATTCGAAAGATATTAAAATAGTTTGCCC
CAAGGCAGAGGAGCTCAGTGTTATTGTAAACAAAGTAAGATGCGAGGAAT
GTGGTTTGACATTCAGCAACGAGCCCCGACTCCGTATGCACGTGTTGAAA
ATTCACGAGCACAAAAATCTCATAAAAAACATCAAAGAAAACGTTCGTTA
CCATTGTCCCGAAAATACTTGCGTTTATGCCCTTACGTCACAACGCTTTT
TTACGACAATGAAATACTTGAAACAGGTTAGTCAAAAAATTAAATTCGTC
GTCAGTTTTCTACAGTATTTATGGAAATATTAACGAAAAATTATAATACA
TCAATCCACCAATGGATTTCCCACTCATTCATAAAATGAAATAACCTCAG
AAATGAACGGTTTTTTTTATCAGCACTACTTAAAAGTGCACGCAGCTAAA
AAATTTGGCTGTGATCAATGCGACAAGAGTTTTTCTACTGAAGCAGCAAG
AATAGCTCATTCGAGGGTTTGCGGAGTGGAATTCACTTGTGGTTGTTTGA
GAGTATTCGGCACTTACGAAGCTCTGCTTACTCATTGCAAAAGAGCTTCT
CACACAGTGGACCAGAAGTACAAAAAAGCTGTTAAGTGAGCACTTTTATA
TTCGATTCAATAAGTTTAACCTCAATGAGTTTACATTTTTTTAAAATGGT
GAATTACATAAGAATTTGGTAAACGAATTAAAAAATTTATTGATTTTTTG
AATTTCAGTCGTAAGCCACAAGGAAAAAGTTCACAGCCGACTAAACCGGT
CTCGATATCCAGTTCTCAGAGTTTAAGCAAGCCGGTGATGATTTTGCCAT
TGCGAACAAGTTATTTTATGCCAGCAAACACAGCGAAAATATCATTTGAC
GTTGCTGTGCAAACGGACGATTTGAAACGTCAGAAAAGAACACAGAGCCC
GTCCAAGAGTTGCAAGCGTCGGGAATCTCGTCAGACTCAAACACAGATTT
TGTCAAAAGAAAAGCGTTTGAGAAAAACTGTGGAGACACAAACAACGAGG
AATTCGTTGAAGCCTGCTGTGAGGAGGAAACATTCGAAAGTGGATTTGAC
GCTGCCAGAAAACTTTGCTACGGACAATTTATTTTCTCCCAGTACTTTAG
AACTGGGAGACGAAGTTGCTCTGGAAGATTTGTGGGGAGAAAAAAATGCT
TCGTTGGGAACGCAAACGAGTCCGGATAAGGATTTGCTCGAGGCCCTCAG
CGACAGCGTCACACAAACCGATCTCGTTACCTTCTACACTCCGGATCAAG
GAAATTGTCTAAACATCGTTGAAAACTCTTGTTACTCCTACGAAGACAAT
ACTCGAGGGATATCTTCGAGATCAGATCCAATGTTGACTATCGATAGCTT
CACCGATCGCTTCAGCAGCATAGAAACCCAAACAGAAACAATTTCGAGCA
ACTCCACTCCGCTCATCTCTTCGAGCGACAGTTTTTTCGAAAATGAACTC
GTCGCTTCAAGAAATTTTGCTCTCAGCTCCAACAATGAGACTCAAACCAC
TGAGAACTTTCACAATATCGAGCAACTCCTTTACAGCAACAATTACACAC
AAACCTGCAACGATATACTTCGAGCCTCGGATCTTGGACTCTCTGATATT
CAGACCCAAACCGCTTGGCCCGAGCTCGTCCACGACTCCAATTCAATTTC
CGCTAAAACTCAAACCCGCACAACTCAGGCTCCCAATCTCCAGTCTGGGG
TTTCTAATTCTTCGGAAAAATCGTGGCTCAACACAAGAATCAGTCACACC
GAAACTCAAACTGACTTGTTAAGCATCTTCGACGAGTTTCCGTGA back to topCoding sequence (CDS) from alignment at scaffold_257:124692..126536- >g9581.t1 ID=g9581.t1|Name=g9581.t1|organism=Venturia canescens|type=CDS|length=1575bp|location=Sequence derived from alignment at scaffold_257:124692..126536- (Venturia canescens)
ATGGAGGAAATTAACAACGAAAATTCGAAAGATATTAAAATAGTTTGCCC
CAAGGCAGAGGAGCTCAGTGTTATTGTAAACAAAGTAAGATGCGAGGAAT
GTGGTTTGACATTCAGCAACGAGCCCCGACTCCGTATGCACGTGTTGAAA
ATTCACGAGCACAAAAATCTCATAAAAAACATCAAAGAAAACGTTCGTTA
CCATTGTCCCGAAAATACTTGCGTTTATGCCCTTACGTCACAACGCTTTT
TTACGACAATGAAATACTTGAAACAGCACTACTTAAAAGTGCACGCAGCT
AAAAAATTTGGCTGTGATCAATGCGACAAGAGTTTTTCTACTGAAGCAGC
AAGAATAGCTCATTCGAGGGTTTGCGGAGTGGAATTCACTTGTGGTTGTT
TGAGAGTATTCGGCACTTACGAAGCTCTGCTTACTCATTGCAAAAGAGCT
TCTCACACAGTGGACCAGAAGTACAAAAAAGCTGTTAATCGTAAGCCACA
AGGAAAAAGTTCACAGCCGACTAAACCGGTCTCGATATCCAGTTCTCAGA
GTTTAAGCAAGCCGGTGATGATTTTGCCATTGCGAACAAGTTATTTTATG
CCAGCAAACACAGCGAAAATATCATTTGACGTTGCTGTGCAAACGGACGA
TTTGAAACGTCAGAAAAGAACACAGAGCCCGTCCAAGAGTTGCAAGCGTC
GGGAATCTCGTCAGACTCAAACACAGATTTTGTCAAAAGAAAAGCGTTTG
AGAAAAACTGTGGAGACACAAACAACGAGGAATTCGTTGAAGCCTGCTGT
GAGGAGGAAACATTCGAAAGTGGATTTGACGCTGCCAGAAAACTTTGCTA
CGGACAATTTATTTTCTCCCAGTACTTTAGAACTGGGAGACGAAGTTGCT
CTGGAAGATTTGTGGGGAGAAAAAAATGCTTCGTTGGGAACGCAAACGAG
TCCGGATAAGGATTTGCTCGAGGCCCTCAGCGACAGCGTCACACAAACCG
ATCTCGTTACCTTCTACACTCCGGATCAAGGAAATTGTCTAAACATCGTT
GAAAACTCTTGTTACTCCTACGAAGACAATACTCGAGGGATATCTTCGAG
ATCAGATCCAATGTTGACTATCGATAGCTTCACCGATCGCTTCAGCAGCA
TAGAAACCCAAACAGAAACAATTTCGAGCAACTCCACTCCGCTCATCTCT
TCGAGCGACAGTTTTTTCGAAAATGAACTCGTCGCTTCAAGAAATTTTGC
TCTCAGCTCCAACAATGAGACTCAAACCACTGAGAACTTTCACAATATCG
AGCAACTCCTTTACAGCAACAATTACACACAAACCTGCAACGATATACTT
CGAGCCTCGGATCTTGGACTCTCTGATATTCAGACCCAAACCGCTTGGCC
CGAGCTCGTCCACGACTCCAATTCAATTTCCGCTAAAACTCAAACCCGCA
CAACTCAGGCTCCCAATCTCCAGTCTGGGGTTTCTAATTCTTCGGAAAAA
TCGTGGCTCAACACAAGAATCAGTCACACCGAAACTCAAACTGACTTGTT
AAGCATCTTCGACGAGTTTCCGTGA back to top
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