g9582.t1 (mRNA) Venturia canescens

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	g9582.t1
Unique Name	g9582.t1
Type	mRNA
Organism	Venturia canescens (vcanescens)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
g9582	g9582	Venturia canescens	gene	scaffold_257 128875..131075 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9582.t1	g9582.t1-PA	Venturia canescens	polypeptide	scaffold_257 128875..131075 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9582.t1-start_codon	g9582.t1-start_codon	Venturia canescens	start_codon	scaffold_257 128875..128877 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9582.t1-CDS	g9582.t1-CDS-1	Venturia canescens	CDS	scaffold_257 128875..129201 +
g9582.t1-CDS	g9582.t1-CDS-2	Venturia canescens	CDS	scaffold_257 129399..129877 +
g9582.t1-CDS	g9582.t1-CDS-3	Venturia canescens	CDS	scaffold_257 129976..130234 +
g9582.t1-CDS	g9582.t1-CDS-4	Venturia canescens	CDS	scaffold_257 130590..130756 +
g9582.t1-CDS	g9582.t1-CDS-5	Venturia canescens	CDS	scaffold_257 130934..131075 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9582.t1-exon	g9582.t1-exon-1	Venturia canescens	exon	scaffold_257 128875..129201 +
g9582.t1-exon	g9582.t1-exon-2	Venturia canescens	exon	scaffold_257 129399..129877 +
g9582.t1-exon	g9582.t1-exon-3	Venturia canescens	exon	scaffold_257 129976..130234 +
g9582.t1-exon	g9582.t1-exon-4	Venturia canescens	exon	scaffold_257 130590..130756 +
g9582.t1-exon	g9582.t1-exon-5	Venturia canescens	exon	scaffold_257 130934..131075 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9582.t1-intron	g9582.t1-intron	Venturia canescens	intron	scaffold_257 130757..130933 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9582.t1-stop_codon	g9582.t1-stop_codon	Venturia canescens	stop_codon	scaffold_257 131073..131075 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold_257:128875..131075+
coding sequence from alignment at scaffold_257:128875..131075+

spliced messenger RNA

>g9582.t1 ID=g9582.t1|Name=g9582.t1|organism=Venturia canescens|type=mRNA|length=1374bp|location=Sequence derived from alignment at scaffold_257:128875..131075+ (Venturia canescens)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGATGTTGTCGGGACCGAGTTATGCGGCGTACGGTTACGCCTCCCA
AGGAGGTTTCGGAAACCAAACCGTCGTCGACAAGGTGCCACCGGAGATGC
TGCACCTGGTTGACGCTCATTGGTACCAATTCCCACCGATGAATCCCCTG
TGGCACGGGATCCTTGGCTTTGTCATCGGTTGCTTGGGGATCGTATCCGT
CATTGGAAACGGAATGGTCGTTTACATTTTCTCTTCGACCAAGAGCCTCC
GCACCCCGAGCAATCTCCTTGTCATCAATCTTGCCTTTTCCGACTTCCTC
ATGATGTTCTGCATGTCGCCACCCATGACCGAAAAATCCATGAAACGGTT
TCTCGATGTCTGTTGCTTCGATGACCGGAAGAATGTCAAAAGTTCTGCCG
GTAAAACATCCGAGTCCAAAAATCTTGATTCGACTCAAGGTACTTGGCCT
CAGATCTGGTTCCCACTCAAGCTGCCGTGTGTGCACACAAAGACTCAAAA
CTCAACGAAAATCCCTGACGAAGGAGCTTTCTCATGGAGATTTCGATGGT
CCCATCAGGTGATCAACTGCTATTACGAGACCTGGGTATTCGGACCGTTG
ATGTGCGAAATCTACGCTATGTTAGGCTCCCTGTACGGATGTAGCTCCAT
CTGGACAATGACGATGATCGCCTTCGACAGATACAACGTAATCGTCAAAG
GATTGGCTGGCAAGCCCTTGACCATCAACGGCTGCCTCCTTCGCATCCTC
GGAATCTGGCTCTTCGCTCTTATCTGGACGGTTGCCCCCATGCTCGGATG
GAACCGATATGTACCAGAAGGCAACATGACGGCCTGCGGAACTGATTACC
TCAACAAGGAGTGGCTCTCGCGCTCGTACATCTTGGTCTACAGCGTCTTC
GTCTACTACATGCCCTTGTTCCTCATCATCTACAGCTACTACTTCATCAT
TGCTGCAGTATCCGCCCACGAAAGGGCGATGAGGGAACAGGCCAAGAAGA
TGAACGTCGCGTCCCTCCGATCCGCTGAGAACGCTAACACCAGCGCTGAG
TGCAAACTGGCCAAGGTCGCTCTGATGACGATCTCCCTCTGGTTCATGGC
CTGGACTCCCTACTTGGTAATCAACTACGCCGGAGTCTTCGAAACCGCGA
AGATCAGCCCACTTTTCACGATCTGGGGCTCCCTCTTCGCCAAGGCCAAC
GCCGTTTACAATCCAATTGTCTACGGAATCAGCCATCCGAAATACCGAGC
CGCCCTCTTCGCGAGATTCCCATCCCTGGCCTGCGGTGGTGGCGAGCCGT
CGCACGCGGGTGACGCGACCTCGACCGTTTCAGGCGTGACGACTGTCACC
GACAACGAGAAATCCGCAGCTTAA

protein sequence of g9582.t1

>g9582.t1-PA ID=g9582.t1-PA|Name=g9582.t1|organism=Venturia canescens|type=polypeptide|length=457bp
MSMLSGPSYAAYGYASQGGFGNQTVVDKVPPEMLHLVDAHWYQFPPMNPL
WHGILGFVIGCLGIVSVIGNGMVVYIFSSTKSLRTPSNLLVINLAFSDFL
MMFCMSPPMTEKSMKRFLDVCCFDDRKNVKSSAGKTSESKNLDSTQGTWP
QIWFPLKLPCVHTKTQNSTKIPDEGAFSWRFRWSHQVINCYYETWVFGPL
MCEIYAMLGSLYGCSSIWTMTMIAFDRYNVIVKGLAGKPLTINGCLLRIL
GIWLFALIWTVAPMLGWNRYVPEGNMTACGTDYLNKEWLSRSYILVYSVF
VYYMPLFLIIYSYYFIIAAVSAHERAMREQAKKMNVASLRSAENANTSAE
CKLAKVALMTISLWFMAWTPYLVINYAGVFETAKISPLFTIWGSLFAKAN
AVYNPIVYGISHPKYRAALFARFPSLACGGGEPSHAGDATSTVSGVTTVT
DNEKSAA

mRNA from alignment at scaffold_257:128875..131075+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>g9582.t1 ID=g9582.t1|Name=g9582.t1|organism=Venturia canescens|type=mRNA|length=2201bp|location=Sequence derived from alignment at scaffold_257:128875..131075+ (Venturia canescens)
ATGTCGATGTTGTCGGGACCGAGTTATGCGGCGTACGGTTACGCCTCCCA
AGGAGGTTTCGGAAACCAAACCGTCGTCGACAAGGTGCCACCGGAGATGC
TGCACCTGGTTGACGCTCATTGGTACCAATTCCCACCGATGAATCCCCTG
TGGCACGGGATCCTTGGCTTTGTCATCGGTTGCTTGGGGATCGTATCCGT
CATTGGAAACGGAATGGTCGTTTACATTTTCTCTTCGACCAAGAGCCTCC
GCACCCCGAGCAATCTCCTTGTCATCAATCTTGCCTTTTCCGACTTCCTC
ATGATGTTCTGCATGTCGCCACCCATGGTATTTGTCAAATAATGTGCCCT
TTGAGTGCACACATGGGTGATGTTGACCCCGGCTTAGCTTCTGGATGGAG
CTCCGTTGAGTTTTCTCTGAGGACTCCGCATTAAAAAACTCTTGGAAGCT
TGTCCGGTCGCTCCGTCGATGCAAAGAATTTCTCACATTCGGATGGAAGT
CGAAGCAACACCCTTTGTATTCAGACCGAAAAATCCATGAAACGGTTTCT
CGATGTCTGTTGCTTCGATGACCGGAAGAATGTCAAAAGTTCTGCCGGTA
AAACATCCGAGTCCAAAAATCTTGATTCGACTCAAGGTACTTGGCCTCAG
ATCTGGTTCCCACTCAAGCTGCCGTGTGTGCACACAAAGACTCAAAACTC
AACGAAAATCCCTGACGAAGGAGCTTTCTCATGGAGATTTCGATGGTCCC
ATCAGGTGATCAACTGCTATTACGAGACCTGGGTATTCGGACCGTTGATG
TGCGAAATCTACGCTATGTTAGGCTCCCTGTACGGATGTAGCTCCATCTG
GACAATGACGATGATCGCCTTCGACAGATACAACGTAATCGTCAAAGGAT
TGGCTGGCAAGCCCTTGACCATCAACGGCTGCCTCCTTCGCATCCTCGGA
ATCTGGCTCTTCGCTCTTATCTGGACGGTTGCCCCCATGCTCGGATGGAA
CCGGTGAGGTTTTTTCCAAATCAGGGCATCGCTCGCTTCTCCTGTGACTT
TTGTGACTCCCATGAGACTTGCACCGATTCCTGAAAGCTTCAATATTTCA
GATATGTACCAGAAGGCAACATGACGGCCTGCGGAACTGATTACCTCAAC
AAGGAGTGGCTCTCGCGCTCGTACATCTTGGTCTACAGCGTCTTCGTCTA
CTACATGCCCTTGTTCCTCATCATCTACAGCTACTACTTCATCATTGCTG
CAGTATCCGCCCACGAAAGGGCGATGAGGGAACAGGCCAAGAAGATGAAC
GTCGCGTCCCTCCGATCCGCTGAGAACGCTAACACCAGCGCTGAGTGCAA
ACTGGCCAAGGTAAAAGGACAAATTTGCTTGAACGATTCCCCTCGACATG
AGATTCCCTATCCGGTGGATCCTACAATGGGGCTTTTTCTCTTTTGATTG
GGGGGAACCCCCTTGCATATGGGGAATCCTCGATCCCCCAACGATTCATT
ATTTGTCCAGGGCTAGAGGCCCGTCGAGGGGAACACTTTTCCCCTTCGAC
GGAGAAGTTGGACAGGGCGCCGGACAAGGGGAAGTTCCTCAATCCACGGA
GAAGCTCCCTTGCGCAAATGTTCCCAATTCCTTCAACCACGGGTTCATCC
CCCGTGTGAAGGGTCTCGTTCCACCGATAAGAGAAACGAGAAAATCATGA
ACATTTTCATCTCAGGTCGCTCTGATGACGATCTCCCTCTGGTTCATGGC
CTGGACTCCCTACTTGGTAATCAACTACGCCGGAGTCTTCGAAACCGCGA
AGATCAGCCCACTTTTCACGATCTGGGGCTCCCTCTTCGCCAAGGCCAAC
GCCGTTTACAATCCAATTGTCTACGGAATCAGGTGATTTAGAGGATTTAA
CACAAATTTTTCGAAAATTTGATCATGCGAGGCTTTTTATTCACTCGAGA
ATTGAAATTTCCGTTAAAAATTATGCAAATTCGTCTCGCCCCCACAATCT
TTCATCTCGAGAGAATATCGACAGTCAGGAAATCAATAACGTTTAATTCT
GTTGAGCAGCCATCCGAAATACCGAGCCGCCCTCTTCGCGAGATTCCCAT
CCCTGGCCTGCGGTGGTGGCGAGCCGTCGCACGCGGGTGACGCGACCTCG
ACCGTTTCAGGCGTGACGACTGTCACCGACAACGAGAAATCCGCAGCTTA
A

Coding sequence (CDS) from alignment at scaffold_257:128875..131075+

>g9582.t1 ID=g9582.t1|Name=g9582.t1|organism=Venturia canescens|type=CDS|length=1374bp|location=Sequence derived from alignment at scaffold_257:128875..131075+ (Venturia canescens)
ATGTCGATGTTGTCGGGACCGAGTTATGCGGCGTACGGTTACGCCTCCCA
AGGAGGTTTCGGAAACCAAACCGTCGTCGACAAGGTGCCACCGGAGATGC
TGCACCTGGTTGACGCTCATTGGTACCAATTCCCACCGATGAATCCCCTG
TGGCACGGGATCCTTGGCTTTGTCATCGGTTGCTTGGGGATCGTATCCGT
CATTGGAAACGGAATGGTCGTTTACATTTTCTCTTCGACCAAGAGCCTCC
GCACCCCGAGCAATCTCCTTGTCATCAATCTTGCCTTTTCCGACTTCCTC
ATGATGTTCTGCATGTCGCCACCCATGACCGAAAAATCCATGAAACGGTT
TCTCGATGTCTGTTGCTTCGATGACCGGAAGAATGTCAAAAGTTCTGCCG
GTAAAACATCCGAGTCCAAAAATCTTGATTCGACTCAAGGTACTTGGCCT
CAGATCTGGTTCCCACTCAAGCTGCCGTGTGTGCACACAAAGACTCAAAA
CTCAACGAAAATCCCTGACGAAGGAGCTTTCTCATGGAGATTTCGATGGT
CCCATCAGGTGATCAACTGCTATTACGAGACCTGGGTATTCGGACCGTTG
ATGTGCGAAATCTACGCTATGTTAGGCTCCCTGTACGGATGTAGCTCCAT
CTGGACAATGACGATGATCGCCTTCGACAGATACAACGTAATCGTCAAAG
GATTGGCTGGCAAGCCCTTGACCATCAACGGCTGCCTCCTTCGCATCCTC
GGAATCTGGCTCTTCGCTCTTATCTGGACGGTTGCCCCCATGCTCGGATG
GAACCGATATGTACCAGAAGGCAACATGACGGCCTGCGGAACTGATTACC
TCAACAAGGAGTGGCTCTCGCGCTCGTACATCTTGGTCTACAGCGTCTTC
GTCTACTACATGCCCTTGTTCCTCATCATCTACAGCTACTACTTCATCAT
TGCTGCAGTATCCGCCCACGAAAGGGCGATGAGGGAACAGGCCAAGAAGA
TGAACGTCGCGTCCCTCCGATCCGCTGAGAACGCTAACACCAGCGCTGAG
TGCAAACTGGCCAAGGTCGCTCTGATGACGATCTCCCTCTGGTTCATGGC
CTGGACTCCCTACTTGGTAATCAACTACGCCGGAGTCTTCGAAACCGCGA
AGATCAGCCCACTTTTCACGATCTGGGGCTCCCTCTTCGCCAAGGCCAAC
GCCGTTTACAATCCAATTGTCTACGGAATCAGCCATCCGAAATACCGAGC
CGCCCTCTTCGCGAGATTCCCATCCCTGGCCTGCGGTGGTGGCGAGCCGT
CGCACGCGGGTGACGCGACCTCGACCGTTTCAGGCGTGACGACTGTCACC
GACAACGAGAAATCCGCAGCTTAA