g9583.t1 (mRNA) Venturia canescens

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	g9583.t1
Unique Name	g9583.t1
Type	mRNA
Organism	Venturia canescens (vcanescens)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
g9583	g9583	Venturia canescens	gene	scaffold_257 132900..135230 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9583.t1	g9583.t1-PA	Venturia canescens	polypeptide	scaffold_257 132900..135230 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9583.t1-stop_codon	g9583.t1-stop_codon	Venturia canescens	stop_codon	scaffold_257 132900..132902 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9583.t1-CDS	g9583.t1-CDS-7	Venturia canescens	CDS	scaffold_257 132900..133017 -
g9583.t1-CDS	g9583.t1-CDS-6	Venturia canescens	CDS	scaffold_257 133170..133333 -
g9583.t1-CDS	g9583.t1-CDS-5	Venturia canescens	CDS	scaffold_257 133504..133614 -
g9583.t1-CDS	g9583.t1-CDS-4	Venturia canescens	CDS	scaffold_257 133706..133853 -
g9583.t1-CDS	g9583.t1-CDS-3	Venturia canescens	CDS	scaffold_257 134013..134226 -
g9583.t1-CDS	g9583.t1-CDS-2	Venturia canescens	CDS	scaffold_257 134414..134652 -
g9583.t1-CDS	g9583.t1-CDS-1	Venturia canescens	CDS	scaffold_257 135019..135230 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9583.t1-exon	g9583.t1-exon-7	Venturia canescens	exon	scaffold_257 132900..133017 -
g9583.t1-exon	g9583.t1-exon-6	Venturia canescens	exon	scaffold_257 133170..133333 -
g9583.t1-exon	g9583.t1-exon-5	Venturia canescens	exon	scaffold_257 133504..133614 -
g9583.t1-exon	g9583.t1-exon-4	Venturia canescens	exon	scaffold_257 133706..133853 -
g9583.t1-exon	g9583.t1-exon-3	Venturia canescens	exon	scaffold_257 134013..134226 -
g9583.t1-exon	g9583.t1-exon-2	Venturia canescens	exon	scaffold_257 134414..134652 -
g9583.t1-exon	g9583.t1-exon-1	Venturia canescens	exon	scaffold_257 135019..135230 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9583.t1-intron	g9583.t1-intron	Venturia canescens	intron	scaffold_257 134653..135018 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g9583.t1-start_codon	g9583.t1-start_codon	Venturia canescens	start_codon	scaffold_257 135228..135230 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold_257:132900..135230-
coding sequence from alignment at scaffold_257:132900..135230-

spliced messenger RNA

>g9583.t1 ID=g9583.t1|Name=g9583.t1|organism=Venturia canescens|type=mRNA|length=1206bp|location=Sequence derived from alignment at scaffold_257:132900..135230- (Venturia canescens)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCATCTTCGTTCGAACCCACTGTGACGGAAGCTGTAGTCGCTGC
TCTGAATCCAGGCACTGCTCTGACCTCTCCGATGAGCAACGTTCTCACAG
ACACTCTGGTTACCATCGGACCCAAGTTTGCTCGACAGTTTATGCGATTC
TCGAATCAGACAGTCGTTGACAAAGTCCCTGAAGAAATGCTGCATCTCAT
CGATCCCTACTGGTATCAGTACCCACCGATGGATCCAATTTGGCACAAAA
TTCTTGGTCTGGTGATGATAGTGATAGGAATTCTGGGATGGACTGGTAAC
GGAATGGTCGTTTATATTTTCCTGGTAACACCAAGTCTCCGAACGCCTAG
TAATCTGCTCGTGGTGAATCTAGCATTTTCGGATTTTCTTATGATGATAA
TGATGTCACCGCCGATGGTGATAAATTGCTGGTTCGAGACATGGGTGCTT
GGTCCTCTCATGTGCGACATTTATGCAATGATTGGTTCATTGTGCGGTGG
TGCATCGATCTGGACGATGACAATGATCGCCTATGATCGTTATAACGTCA
TTGTTAAAGGCATGAATGGCAGACCGCTGACCATCAACCTCGCAATTCTT
AAAATATTGATCATTTGGTTACACTCTCTTGTGTGGACGATATTTCCTAT
GGTAGGGTGGAATCGATACGTTCCGGAAGGAAATATGACGTCGTGTGGCA
CCGATTATTTCAACCAAGCGTGGTTATCGCGCTCCTACATTCTCGTTTAT
TCCATTTTCGTCTATTACACGCCGTTGTTCACAATTATTTATTCCTACTG
GTTCATCGTTGCTACTGTCGCTGCTCATGAAAAAGCGATGAGAGATCAGG
CAAAAAAAATGAACGTTGCGTCCCTCAGGAGCGGTGAACAGGAAGGAGAA
AGCGCTGAAGTCAAACTCGCCAAGGTGGCAATAACAACAATTTCTCTCTG
GTTCGCCGCCTGGACTCCTTATTTGGTGATCAATTACACTGGAATTTTTG
GAGGCAAAATTAGTCCACTTTTCACAATTTGGGGATCGTTGTGTGCCAAA
ACAAACGCTTGTTACAATCCGATCGTTTACGCAGTCAGCCATCCAAAATA
TCGAGCAGCTTTGCACGCCAAATTTCCTTGTTTGCTTATCGGAGCAGATG
AAAATAAGCCTGCAGCTCCAGCCGGTGGTGCAGCGGCACCAGCAGCCGAA
GCCTGA

protein sequence of g9583.t1

>g9583.t1-PA ID=g9583.t1-PA|Name=g9583.t1|organism=Venturia canescens|type=polypeptide|length=401bp
MMASSFEPTVTEAVVAALNPGTALTSPMSNVLTDTLVTIGPKFARQFMRF
SNQTVVDKVPEEMLHLIDPYWYQYPPMDPIWHKILGLVMIVIGILGWTGN
GMVVYIFLVTPSLRTPSNLLVVNLAFSDFLMMIMMSPPMVINCWFETWVL
GPLMCDIYAMIGSLCGGASIWTMTMIAYDRYNVIVKGMNGRPLTINLAIL
KILIIWLHSLVWTIFPMVGWNRYVPEGNMTSCGTDYFNQAWLSRSYILVY
SIFVYYTPLFTIIYSYWFIVATVAAHEKAMRDQAKKMNVASLRSGEQEGE
SAEVKLAKVAITTISLWFAAWTPYLVINYTGIFGGKISPLFTIWGSLCAK
TNACYNPIVYAVSHPKYRAALHAKFPCLLIGADENKPAAPAGGAAAPAAE
A

mRNA from alignment at scaffold_257:132900..135230-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>g9583.t1 ID=g9583.t1|Name=g9583.t1|organism=Venturia canescens|type=mRNA|length=2331bp|location=Sequence derived from alignment at scaffold_257:132900..135230- (Venturia canescens)
ATGATGGCATCTTCGTTCGAACCCACTGTGACGGAAGCTGTAGTCGCTGC
TCTGAATCCAGGCACTGCTCTGACCTCTCCGATGAGCAACGTTCTCACAG
ACACTCTGGTTACCATCGGACCCAAGTTTGCTCGACAGTTTATGCGATTC
TCGAATCAGACAGTCGTTGACAAAGTCCCTGAAGAAATGCTGCATCTCAT
CGATCCCTACTGGTCAGTCTCGTTGAATTAAACTTTTTCTTCCATTTATT
GTTAAATTGCAATGTTATCCTAAGGTTGCAAATACTTTCAATGCATTAAT
TCCTTTCGTGCACGTTCCAAATGTCCTGATTATATCAAGTTTTTGAAATT
TCACGATTCTAATCTTGGAGGATGGTCAATTGAAAAAAATGCTTAAAATT
TTTCCAGAATCTCAGATATTTATTTGTACACTGCAAAACGTTTTGTCGAT
AAGTTCACGGTCAAAGAAAAAGCAGAAATTGTAAAGACAAAAGTTCTGCT
TGATCTAAGAAGCGAGGAAAGTTCGATGGAAATTTTAAAAGAAAATTTTA
ATTCTTAAATAATGAATTTTTAAATTAGGTATCAGTACCCACCGATGGAT
CCAATTTGGCACAAAATTCTTGGTCTGGTGATGATAGTGATAGGAATTCT
GGGATGGACTGGTAACGGAATGGTCGTTTATATTTTCCTGGTAACACCAA
GTCTCCGAACGCCTAGTAATCTGCTCGTGGTGAATCTAGCATTTTCGGAT
TTTCTTATGATGATAATGATGTCACCGCCGATGGTGATAAATTGCTGGTT
CGAGACATGGGTGCTTGGTCAGTGAAATTTCATTAAAAATTCATTATCGT
TTAATAGTTGAAGTAAAAAAAGTGGCAAAAAGAAATTTTTTGGCGTGCGC
TGCTCAATTTCACTCAGAATTTGGGAAAGTTTCTGAGGATCTTGATAAGA
AAAATCCTGTTTTTTTCTTCATTTGATGGAAAAAAAAATTTCACCTTGTC
CCAGGTCCTCTCATGTGCGACATTTATGCAATGATTGGTTCATTGTGCGG
TGGTGCATCGATCTGGACGATGACAATGATCGCCTATGATCGTTATAACG
TCATTGTTAAAGGCATGAATGGCAGACCGCTGACCATCAACCTCGCAATT
CTTAAAATATTGATCATTTGGTTACACTCTCTTGTGTGGACGATATTTCC
TATGGTAGGGTGGAATCGGTGAGCACAGATAATTACATTTTAGGTTTACT
AACGTTTCACTATTCTGTTATCTGTTATTATTCAAAATTTACAAAACTTT
GACATTTTTTCTATTTTTCATATATTCTCTTCTTTTTATAGGAGAAAAAA
ATTCATTGTAATTCAACATGTTTTCAGATACGTTCCGGAAGGAAATATGA
CGTCGTGTGGCACCGATTATTTCAACCAAGCGTGGTTATCGCGCTCCTAC
ATTCTCGTTTATTCCATTTTCGTCTATTACACGCCGTTGTTCACAATTAT
TTATTCCTACTGGTTCATCGTTGCTGTGAGTAATCGAAGAACATTTTCAA
AGTTGACTGAACCGTGGCTGTTATAAAAATCTTGAGCGCCACATCAATTT
TTTCTTCAATTCGCAGACTGTCGCTGCTCATGAAAAAGCGATGAGAGATC
AGGCAAAAAAAATGAACGTTGCGTCCCTCAGGAGCGGTGAACAGGAAGGA
GAAAGCGCTGAAGTCAAACTCGCCAAGGTTAATTGATACCAAAAATCATA
AGAATGATCGATGAATTTTGAAAGAATTCAAAATCTTATTTCAAATAATT
CTGACCGAGGCATCTTCGATTCATTGAAAAACTGTGACCTTTCGAGAGGT
CTCGATGGACTACCAACTCCAATGGTAAACTGAAAATCTGTTGACAGGTG
GCAATAACAACAATTTCTCTCTGGTTCGCCGCCTGGACTCCTTATTTGGT
GATCAATTACACTGGAATTTTTGGAGGCAAAATTAGTCCACTTTTCACAA
TTTGGGGATCGTTGTGTGCCAAAACAAACGCTTGTTACAATCCGATCGTT
TACGCAGTCAGGTTGGTCTCAATTTTTACACTTTTCATTGAAAATCAAGC
TAGTTTTCTTAAACAGGGTCATTTTGACTCCTGCCGCTGCTTCATTCAAA
TTTTTCTCCAGATTCACTGCAAATTTCAAAACCATTCATCTTCCAATCAT
TTATTATTTGTAGCCATCCAAAATATCGAGCAGCTTTGCACGCCAAATTT
CCTTGTTTGCTTATCGGAGCAGATGAAAATAAGCCTGCAGCTCCAGCCGG
TGGTGCAGCGGCACCAGCAGCCGAAGCCTGA

Coding sequence (CDS) from alignment at scaffold_257:132900..135230-

>g9583.t1 ID=g9583.t1|Name=g9583.t1|organism=Venturia canescens|type=CDS|length=1206bp|location=Sequence derived from alignment at scaffold_257:132900..135230- (Venturia canescens)
ATGATGGCATCTTCGTTCGAACCCACTGTGACGGAAGCTGTAGTCGCTGC
TCTGAATCCAGGCACTGCTCTGACCTCTCCGATGAGCAACGTTCTCACAG
ACACTCTGGTTACCATCGGACCCAAGTTTGCTCGACAGTTTATGCGATTC
TCGAATCAGACAGTCGTTGACAAAGTCCCTGAAGAAATGCTGCATCTCAT
CGATCCCTACTGGTATCAGTACCCACCGATGGATCCAATTTGGCACAAAA
TTCTTGGTCTGGTGATGATAGTGATAGGAATTCTGGGATGGACTGGTAAC
GGAATGGTCGTTTATATTTTCCTGGTAACACCAAGTCTCCGAACGCCTAG
TAATCTGCTCGTGGTGAATCTAGCATTTTCGGATTTTCTTATGATGATAA
TGATGTCACCGCCGATGGTGATAAATTGCTGGTTCGAGACATGGGTGCTT
GGTCCTCTCATGTGCGACATTTATGCAATGATTGGTTCATTGTGCGGTGG
TGCATCGATCTGGACGATGACAATGATCGCCTATGATCGTTATAACGTCA
TTGTTAAAGGCATGAATGGCAGACCGCTGACCATCAACCTCGCAATTCTT
AAAATATTGATCATTTGGTTACACTCTCTTGTGTGGACGATATTTCCTAT
GGTAGGGTGGAATCGATACGTTCCGGAAGGAAATATGACGTCGTGTGGCA
CCGATTATTTCAACCAAGCGTGGTTATCGCGCTCCTACATTCTCGTTTAT
TCCATTTTCGTCTATTACACGCCGTTGTTCACAATTATTTATTCCTACTG
GTTCATCGTTGCTACTGTCGCTGCTCATGAAAAAGCGATGAGAGATCAGG
CAAAAAAAATGAACGTTGCGTCCCTCAGGAGCGGTGAACAGGAAGGAGAA
AGCGCTGAAGTCAAACTCGCCAAGGTGGCAATAACAACAATTTCTCTCTG
GTTCGCCGCCTGGACTCCTTATTTGGTGATCAATTACACTGGAATTTTTG
GAGGCAAAATTAGTCCACTTTTCACAATTTGGGGATCGTTGTGTGCCAAA
ACAAACGCTTGTTACAATCCGATCGTTTACGCAGTCAGCCATCCAAAATA
TCGAGCAGCTTTGCACGCCAAATTTCCTTGTTTGCTTATCGGAGCAGATG
AAAATAAGCCTGCAGCTCCAGCCGGTGGTGCAGCGGCACCAGCAGCCGAA
GCCTGA