Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|
| Venturia canescens OGS 1.1 20190131 | 2019-01-31 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9585 | g9585 | Venturia canescens | gene | scaffold_257 139104..142089 + |
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9585.t1-start_codon | g9585.t1-start_codon | Venturia canescens | start_codon | scaffold_257 139104..139106 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9585.t1-exon | g9585.t1-exon-1 | Venturia canescens | exon | scaffold_257 139104..139211 + |
| g9585.t1-exon | g9585.t1-exon-2 | Venturia canescens | exon | scaffold_257 140757..140831 + |
| g9585.t1-exon | g9585.t1-exon-3 | Venturia canescens | exon | scaffold_257 141176..141269 + |
| g9585.t1-exon | g9585.t1-exon-4 | Venturia canescens | exon | scaffold_257 141935..142089 + |
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9585.t1-intron | g9585.t1-intron | Venturia canescens | intron | scaffold_257 141270..141934 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9585.t1-stop_codon | g9585.t1-stop_codon | Venturia canescens | stop_codon | scaffold_257 142087..142089 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >g9585.t1 ID=g9585.t1|Name=g9585.t1|organism=Venturia canescens|type=mRNA|length=432bp|location=Sequence derived from alignment at scaffold_257:139104..142089+ (Venturia canescens)|Notes=Excludes all bases but those of type(s): exon.
ATGGACGCCCTGCGGGAGCAGGTGATGATCAATCAGTTCGTTCTCGCTGC
AGGTTGCGCCAGAGAACAAGCCAAACAGTTGCTGCAGTCCGCACACTGGC
AATTCGAGACCGCCCTGAGCATATTTTTCCAAGAAGCGGCCATTCCTTCT
TGCACACAAGGGCCCGGCGCACATTTCGGACAGATAACGCCATGCAACAC
GCCGGCGACGCCGCCCAATTTCCCGGACGCCCTGTTGGCTTTTTCCAAAA
TGTCTGCCGGAGATAAAACTCCTTCCGGCATGTCACCGAGTCAAAATGGC
CAACAGCAAACATCGCCACCGATGATGCAGCAGCAACAGGCGCACAGATC
GCGATGTAGCAGCGTATCGAGTGGAAATCAGCCGCAAAATCCGACCCAGC
AGCAGTTCGGGATCGGGGAGCTTCAAAGATAA back to topprotein sequence of g9585.t1 >g9585.t1-PA ID=g9585.t1-PA|Name=g9585.t1|organism=Venturia canescens|type=polypeptide|length=143bp
MDALREQVMINQFVLAAGCAREQAKQLLQSAHWQFETALSIFFQEAAIPS
CTQGPGAHFGQITPCNTPATPPNFPDALLAFSKMSAGDKTPSGMSPSQNG
QQQTSPPMMQQQQAHRSRCSSVSSGNQPQNPTQQQFGIGELQR back to topmRNA from alignment at scaffold_257:139104..142089+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >g9585.t1 ID=g9585.t1|Name=g9585.t1|organism=Venturia canescens|type=mRNA|length=2986bp|location=Sequence derived from alignment at scaffold_257:139104..142089+ (Venturia canescens)
ATGGACGCCCTGCGGGAGCAGGTGATGATCAATCAGTTCGTTCTCGCTGC
AGGTTGCGCCAGAGAACAAGCCAAACAGTTGCTGCAGTCCGCACACTGGC
AATTCGAGGTAATCATGTCGATAAACAAATCACAACAGACTCACACATTC
TTACCAAATACTTGTTACCTCCACATGCGCACGTGAACACGAATGTTGCG
CGTGTGCGTGCATGGATTTCGTGTGAATTTATATACACACGGTTTATGCG
CGTATGTTCTGAAATATTTGCAACCACGATTTTTCGGTTTTTCATTTCGC
ACGTTTCGTTTGAATTTTTTTCACTTTTCAAAATAATTTCAGATTCGAAT
GTTTTTAAATGTTTTTTCATGATTTGTGAATTTTTTTCTGAATTTTTGTC
TTCAAGTCATTTACAGTTGGTTTCATCATTTTTTTTTTACGAAATTTTTT
TTACACTTTTCGTGATTGTTTTTTCATGATTTGTCAAAATTTTTCTGAAT
CGTGTTGAAATTTTTCTTAAATCTTCACGACTAAATTCCCGTCAAAAAAA
AATTTTGCACTCGTGATTTTTGTATCGCTGATAGCGTCGAAACCGTTCGA
GATAGAGCAAAAGTCGATAGGACCGATATTGTAGGGCTTCAAATTTCCTA
CTAAAAAGCTTCCGACCAAATTTTTTTATCCCCAGTACTTTAGCGCTGGG
AGGTCGAACAAAGTAATTCGCTTGATCTCTAAGTACTCGAGTGGCTCTCG
CACTGAAAATACCAAAAATACAGTCAAGCTGACATCAGGAACTTTTTTGT
GAGAAATTTCACCCCGTAGAAAATCGGTTCTGTAGTCTTTCTCTCTATTT
CCTATAGTTTCGACTGTAGAAGCGTTCGAAGCAACGAAAGGTTCCAAACT
TTCGTAATTACTCTTGAGGAATGAGTCCGATCGAGAAACGTTATTTGACC
CTTCTTCTTGGAATTTTGTCTTTAAACTTCCCATTGTGGCGACACGATGT
CGCCGGACACCTTGTACATGTGTTTTCACTACATTTAAATATTTAGACGC
GTACAAACGTTCCTTGTTTTTACAACAAATAAAATTCGTATTTTCGTTGC
TTATTTTCGCAACGTTCCTTCCCACGTGTGCATCCAAAAAGAGTTGTTTA
TCCTTAAAAATTTAACAAAACCACTGCAGAATTGTCTTGTATTTGCCTCA
ACTTGTAATTAAACATCGAACGAAATGAAAACTGACGCGAGCGTCAATTT
GACTAAATTTTTGTCCTCGACGTCGTTTTAGTCTCCATTAAACCAATTTT
TTTATGACGACTCGACGAAATCAACGGTTTTTCAAAGTCATAGCCCCGCG
ATTAATTGAGGAATACAAGCTTCCTGTTATTGTCGTTGCTTTTGGAACTT
CGAGTAGTTCGCAAAGTTGCCGCTAGGCGGCGAGCGCCCCCGGTTTCGCG
ACACTCGTTTCATAACATTTGTTTTTGTTTTCGATTCGAATCGATCGCTT
CGATTTTCTATATCGAATTTTCGATATTTTCGTCCAATTTTCCGTTATGT
CGAGGTTCAAATTTCCGTGCACAAACAATTCTTCTAACTACCACAATGTC
CAAGCAAATTTCTGTTTCGTTACGATTTTTCGACATTTTCTTTTCCTTTT
CAGACCGCCCTGAGCATATTTTTCCAAGAAGCGGCCATTCCTTCTTGCAC
ACAAGGGCCCGGCGCACATTTCGGACAGGTTAGTAAAGACAAATGCGAAA
CTCAAATGACAGCGAAATTTGAAAAAAAATTTTAAATAAAGACAAAAACA
TTGACGATCGAGAACCACTGGCTCTCGGCACAGAGATTCGAAGACAAAGT
GAAAGAAAGGTTAGAACACGCGGCGCGAGTGGGTTACTATTCTGGTAGTT
GTGTCGCGTGGCATTCCGATAAGCGATGTGCCAAATCCCCTAGTGTTTCA
AGACCTGAAGAAAATCGCACGAATTTTCTATTTCACAACTGTCTATTTTC
GCTAGTCTATTCAACGAGTCTCGTCTATAAAATAATCGGCTTTTGTTTGG
GTTTGTTTGTTTTTTTCCGCAGATAACGCCATGCAACACGCCGGCGACGC
CGCCCAATTTCCCGGACGCCCTGTTGGCTTTTTCCAAAATGTCTGCCGGA
GATAAAACTCCTTCCGGTAAATGAAAAAAAGTATTGAAAATATGAAAAAC
TCGATAAAAATCAGGAAGAAGCTTTGACGATGGAGTTACAGAAATTTTAT
TAGAAGATGAAAAAATTGAATAAATTTCTTCCATGTCACCCCGATTTTGA
TCGAAATTTTGAATTGACGGAAGGAACTAAACTTTGAAATAACCTGGAGT
TGGAAAAATGGTGAAGAGCGGAAAAAAAAATGTTGAAAATTTCACATTTT
TTCACTCGAAGTTGATTTTCTGGAGACTGTAAAGTCTAAAAATCATTTAC
GAGTGAAGCAAAAAGCTTTGTGAACGATGAAAATCAGGAAGAAACTTTGA
CAACTGAATCGAGTTACAGAAATTTCATTGAAATATAAAAAAAAAACAAT
TTTTAACGTCACCAAAGTTCTGATTTTGAAAAAAATACTTCATTTGTCAG
GTTGAAATTTTGTAATCAAAAAATTCTGTAAAAACTTTTTAAAAAACCTA
GAAAAATTGAAATTTTTTTTTTTTTTTTCTAATGTCATCCGAGTTCTGAT
TTTGAACGAAATATTTAATTTGACAGGCCAAAATTTCGTAATGATAAAAT
CCTGTAAAAACTTTGAAAAAATCTACATAAATGGCAAAAGAAATGTTGAA
AAATAATTAATTACGAAATTTCGAATTTCAGGCATGTCACCGAGTCAAAA
TGGCCAACAGCAAACATCGCCACCGATGATGCAGCAGCAACAGGCGCACA
GATCGCGATGTAGCAGCGTATCGAGTGGAAATCAGCCGCAAAATCCGACC
CAGCAGCAGTTCGGGATCGGGGAGCTTCAAAGATAA back to topCoding sequence (CDS) from alignment at scaffold_257:139104..142089+ >g9585.t1 ID=g9585.t1|Name=g9585.t1|organism=Venturia canescens|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_257:139104..142089+ (Venturia canescens)
ATGGACGCCCTGCGGGAGCAGGTGATGATCAATCAGTTCGTTCTCGCTGC
AGGTTGCGCCAGAGAACAAGCCAAACAGTTGCTGCAGTCCGCACACTGGC
AATTCGAGACCGCCCTGAGCATATTTTTCCAAGAAGCGGCCATTCCTTCT
TGCACACAAGGGCCCGGCGCACATTTCGGACAGATAACGCCATGCAACAC
GCCGGCGACGCCGCCCAATTTCCCGGACGCCCTGTTGGCTTTTTCCAAAA
TGTCTGCCGGAGATAAAACTCCTTCCGGCATGTCACCGAGTCAAAATGGC
CAACAGCAAACATCGCCACCGATGATGCAGCAGCAACAGGCGCACAGATC
GCGATGTAGCAGCGTATCGAGTGGAAATCAGCCGCAAAATCCGACCCAGC
AGCAGTTCGGGATCGGGGAGCTTCAAAGATAA back to top
|