Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|
| Venturia canescens OGS 1.1 20190131 | 2019-01-31 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9588 | g9588 | Venturia canescens | gene | scaffold_257 157879..158615 + |
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9588.t1-start_codon | g9588.t1-start_codon | Venturia canescens | start_codon | scaffold_257 157879..157881 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9588.t1-CDS | g9588.t1-CDS-1 | Venturia canescens | CDS | scaffold_257 157879..157963 + |
| g9588.t1-CDS | g9588.t1-CDS-2 | Venturia canescens | CDS | scaffold_257 158314..158615 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9588.t1-exon | g9588.t1-exon-1 | Venturia canescens | exon | scaffold_257 157879..157963 + |
| g9588.t1-exon | g9588.t1-exon-2 | Venturia canescens | exon | scaffold_257 158314..158615 + |
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9588.t1-intron | g9588.t1-intron | Venturia canescens | intron | scaffold_257 157964..158313 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| g9588.t1-stop_codon | g9588.t1-stop_codon | Venturia canescens | stop_codon | scaffold_257 158613..158615 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >g9588.t1 ID=g9588.t1|Name=g9588.t1|organism=Venturia canescens|type=mRNA|length=387bp|location=Sequence derived from alignment at scaffold_257:157879..158615+ (Venturia canescens)|Notes=Excludes all bases but those of type(s): exon.
ATGAAACTGACGATTCTGCTGATCGCTGTCCTCGTATCCGCGGCCCTTGC
ACTTCCAGCTCCACGTCTCAAAGGCAAAATCAAAGAGCCCGAAGCGAACG
TGATCAGAAAACCCAGAAACATTGGGCTTGGATTGGGCCTTTCTGCCGGA
TTCGATACGTTTGGCGATTACGGAAGTTACGGGGGATATTATTCCCCGTA
CCTGTATGGTCGACCCTACGGTGGGCTCTACCCTGGGCCCTACGTTCGAC
CTTACCCTCCACCCTTTTATGGAGGTTATGAGAATGTACACGGTGGAGTT
CATGGAGGAATAGGATTCGATTTCGGCGCCAATGTCGGCGTTGATTATGG
AAGATACGGTGGGGACTATTGGGATCATCTCTGGTGA back to topprotein sequence of g9588.t1 >g9588.t1-PA ID=g9588.t1-PA|Name=g9588.t1|organism=Venturia canescens|type=polypeptide|length=128bp
MKLTILLIAVLVSAALALPAPRLKGKIKEPEANVIRKPRNIGLGLGLSAG
FDTFGDYGSYGGYYSPYLYGRPYGGLYPGPYVRPYPPPFYGGYENVHGGV
HGGIGFDFGANVGVDYGRYGGDYWDHLW back to topmRNA from alignment at scaffold_257:157879..158615+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >g9588.t1 ID=g9588.t1|Name=g9588.t1|organism=Venturia canescens|type=mRNA|length=737bp|location=Sequence derived from alignment at scaffold_257:157879..158615+ (Venturia canescens)
ATGAAACTGACGATTCTGCTGATCGCTGTCCTCGTATCCGCGGCCCTTGC
ACTTCCAGCTCCACGTCTCAAAGGCAAAATCAAAGGTAAGTTTAAAAAAT
TGTATTTTGACTCACCGAGTACGAGTATGATCAAAATTTCATTTTCAAAA
TAAAAATTTGAAAAAAAATTGCCGAAAACTGATTTCGAGGTTTTTCTATT
TTATTCTACAAAAGACGTAGATTATTTAAAAAATACACGTTTCATGTCCC
ATTAATTATTTGTCTAAAAGCATTTTTTCACAATGCTCATGAGAATTCAT
TTTACTTTAACTCGCAGCAGTGACCAACCTCCGATTCAATTGTCGAGTGA
CATTTTTTCAGCTCAAATCGACCCCGCAGTCACTTTTTCGATCTTGCTGG
CAAAAAAAAGTTTTCGATATTTTTATGTTTTTTAGAGCCCGAAGCGAACG
TGATCAGAAAACCCAGAAACATTGGGCTTGGATTGGGCCTTTCTGCCGGA
TTCGATACGTTTGGCGATTACGGAAGTTACGGGGGATATTATTCCCCGTA
CCTGTATGGTCGACCCTACGGTGGGCTCTACCCTGGGCCCTACGTTCGAC
CTTACCCTCCACCCTTTTATGGAGGTTATGAGAATGTACACGGTGGAGTT
CATGGAGGAATAGGATTCGATTTCGGCGCCAATGTCGGCGTTGATTATGG
AAGATACGGTGGGGACTATTGGGATCATCTCTGGTGA back to topCoding sequence (CDS) from alignment at scaffold_257:157879..158615+ >g9588.t1 ID=g9588.t1|Name=g9588.t1|organism=Venturia canescens|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_257:157879..158615+ (Venturia canescens)
ATGAAACTGACGATTCTGCTGATCGCTGTCCTCGTATCCGCGGCCCTTGC
ACTTCCAGCTCCACGTCTCAAAGGCAAAATCAAAGAGCCCGAAGCGAACG
TGATCAGAAAACCCAGAAACATTGGGCTTGGATTGGGCCTTTCTGCCGGA
TTCGATACGTTTGGCGATTACGGAAGTTACGGGGGATATTATTCCCCGTA
CCTGTATGGTCGACCCTACGGTGGGCTCTACCCTGGGCCCTACGTTCGAC
CTTACCCTCCACCCTTTTATGGAGGTTATGAGAATGTACACGGTGGAGTT
CATGGAGGAATAGGATTCGATTTCGGCGCCAATGTCGGCGTTGATTATGG
AAGATACGGTGGGGACTATTGGGATCATCTCTGGTGA back to top
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