Some publications involving BIPAA:

Bretaudeau A, Monjeaud C, Le Bras Y, Legeai F, Collin O, BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ. GigaScience 015 May 9;4:22.

Legeai F, Derrien T. Identification of long non-coding RNAs in insects genomes Current Opinion in Insect Science (in press)

Dumas P, Legeai F, Lemaitre C, Scaon E, Orsucci M, Labadie K, Gimenez S, Clamens AL, Henri H, Vavre F, Aury JM, Fournier P, Kergoat GJ, d’Alençon E. Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species? Genetica. 2015 Feb 19.

Gouin A, Legeai F, Nouhaud P, Whibley A, Simon JC, Lemaitre C. Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads. Heredity 2015 May;114(5):494-501.

Legeai F, Gimenez S, Duvic B, Escoubas JM, Gosselin Grenet AS, Blanc F, Cousserans F, Séninet I, Bretaudeau A, Mutuel D, Girard PA, Monsempes C, Magdelenat G, Hilliou F, Feyereisen R, Ogliastro M, Volkoff AN, Jacquin-Joly E, d’Alençon E, Nègre N, Fournier P. Establishment and analysis of a reference transcriptome for Spodoptera frugiperda. BMC Genomics. 2014 Aug 23;15:704.

Jaquiéry J, Stoeckel S, Larose C, Nouhaud P, Rispe C, Mieuzet L, Bonhomme J, Mahéo F, Legeai F, Gauthier JP, Prunier-Leterme N, Tagu D, Simon JC. Genetic control of contagious asexuality in the pea aphid. PLoS Genet. 2014 Dec 4;10(12)

Glaser N, Gallot A, Legeai F, Montagné N, Poivet E, Harry M, Calatayud PA, Jacquin-Joly E. Candidate chemosensory genes in the Stemborer Sesamia nonagrioides. Int J Biol Sci. 2013 May 21;9(5):481-95.

Poivet E, Gallot A, Montagné N, Glaser N, Legeai F, Jacquin-Joly E. A comparison of the olfactory gene repertoires of adults and larvae in the noctuid moth Spodoptera littoralis. PLoS One. 2013;8(4)

Jaquiéry J, Stoeckel S, Nouhaud P, Mieuzet L, Mahéo F, Legeai F, Bernard N, Bonvoisin A, Vitalis R, Simon JC. Genome scans reveal candidate regions involved in the adaptation to host plant in the pea aphid complex. Mol Ecol. 2012 Nov;21(21):5251-64.

Le Trionnaire G, Jaubert-Possamai S, Bonhomme J, Gauthier JP, Guernec G, Le Cam A, Legeai F, Monfort J, Tagu D. Transcriptomic profiling of the reproductive mode switch in the pea aphid in response to natural autumnal photoperiod. J Insect Physiol. 2012 Dec;58(12):1517-24.

Jacquin-Joly E, Legeai F, Montagné N, Monsempes C, François MC, Poulain J,Gavory F, Walker WB 3rd, Hansson BS, Larsson MC. Candidate chemosensory genes in female antennae of the noctuid moth Spodoptera littoralis. Int J Biol Sci.2012;8(7):1036-50.

Ollivier M, Gabaldón T, Poulain J, Gavory F, Leterme N, Gauthier JP, Legeai F,Tagu D, Simon JC, Rispe C. Comparison of gene repertoires and patterns of evolutionary rates in eight aphid species that differ by reproductive mode. Genome Biol Evol. 2012;4(2):155-67.

Jaquiéry J, Stoeckel S, Rispe C, Mieuzet L, Legeai F, Simon JC. Accelerated evolution of sex chromosomes in aphids, an x0 system. Mol Biol Evol. 2012 Feb;29(2):837-47.

Legeai F, Malpel S, Montagné N, Monsempes C, Cousserans F, Merlin C, François MC, Maïbèche-Coisné M, Gavory F, Poulain J, Jacquin-Joly E. An Expressed Sequence Tag collection from the male antennae of the Noctuid moth Spodoptera littoralis: a resource for olfactory and pheromone detection research. BMC Genomics. 2011 Jan 29;12:86.

Volkoff AN, Jouan V, Urbach S, Samain S, Bergoin M, Wincker P, Demettre E, Cousserans F, Provost B, Coulibaly F, Legeai F, Béliveau C, Cusson M, Gyapay G, Drezen JM. Analysis of virion structural components reveals vestiges of the ancestral ichnovirus genome. PLoS Pathog. 2010 May 27;6(5)

d’Alençon, E, Sezutsu H, Legeai F, Permal, E, Bernard-Samain, S., Gimeneza, S., Gagneur, C., Cousserans, F., Shimomura, M., Brun-Barale, A., Flutre, T., Couloux, A., East, P., Gordong, K., Mita, K., Quesneville, H., Fournier P., Feyereisen, R. Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements, (2010) PNAS  Apr 27;107(17):7680-5.

International Aphid Genomics Consortium. Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biol. 2010 Feb 23;8(2)

Legeai F, Shigenobu S, Gauthier JP, Colbourne J, Rispe C, Collin O, Richards S, Wilson ACC, Tagu D (2010) AphidBase: A centralized bioinformatic resource for annotation of the pea aphid genome. Insect Molecular Biology vol19,0,5-12

Ollivier M., Legeai F., Rispe C. (2010) Comparative analysis of the Acyrthosiphon pisum genome and expressed sequence tag-based gene sets from other aphid species. Ins. Mol. Biol. Vol19,0,33-45

Legeai F., Rizk G., Walsh T., Edwards O., Gordon K., Lavenier D., Leterme N., Méreau A., Nicolas J., Tagu D., Jaubert-Possamai S. (2010) Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum. BMC Genomics  2010 May 5;11(1):281

Legeai F., Malpel S., Montagné N., Monsempes C., Cousseran F., Merlin C., François MC., Maïbèche-Coisné M., Gavory F., Poulain J., Jacquin-Joly E. (2010) An Expressed Sequence Tag collection from the male antennae of the Noctuid moth Spodoptera littoralis: a resource for olfactory and pheromone detection research (Submitted to BMC Genomics)

Le Trionnaire G, Francis F, Jaubert-Possamai S, Bonhomme J, De Pauw E, Gauthier JP, Haubruge E, Legeai F, Prunier-Leterme N, Simon JC, Tanguy S, Tagu D. (2009) Transcriptomic and proteomic analyses of  seasonal photoperiodism in the pea aphid BMC Genomics. 2009 Sep 29;10:456.

Rispe, C, Kutsukake, M, Doublet, V, Hudaverdian, S, Legeai, F, Simon, JC, Tagu, D, Fukatsu, T (2008). Large gene family expansion and variable selective pressures for cathepsin B in aphids. Mol. Biol. Evol., 25, 1:5-17.