AE3000861-RA (mRNA) Aphidius ervi

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	AE3000861-RA
Unique Name	AE3000861-RA
Type	mRNA
Organism	Aphidius ervi (aervi)
Sequence length	883

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold7	contig	scaffold7:1035661..1036745 + View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly (v3.0) and Annotation (v3.0) of Aphidius ervi	2017-01-26

Properties


Property Name	Value
AED	0.13
QI	307\|1\|0.66\|1\|1\|1\|3\|0\|191
eAED	0.13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
AE3000861	AE3000861	Aphidius ervi	gene	scaffold7 1035661..1036745 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
AE3000861-RA	AE3000861-PA	Aphidius ervi	polypeptide	scaffold7 1035968..1036745 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
AE3000861-RA:exon:623	AE3000861-RA:exon:623	Aphidius ervi	exon	scaffold7 1035661..1036084 +
AE3000861-RA:exon:624	AE3000861-RA:exon:624	Aphidius ervi	exon	scaffold7 1036194..1036401 +
AE3000861-RA:exon:625	AE3000861-RA:exon:625	Aphidius ervi	exon	scaffold7 1036495..1036745 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
AE3000861-RA:five_prime_utr	AE3000861-RA:five_prime_utr	Aphidius ervi	five_prime_UTR	scaffold7 1035661..1035967 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
AE3000861-RA:cds	AE3000861-RA:cds	Aphidius ervi	CDS	scaffold7 1036495..1036745 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold7:1035661..1036745+
coding sequence from alignment at scaffold7:1035661..1036745+

mRNA sequence

>AE3000861-RA ID=AE3000861-RA|Name=AE3000861-RA|organism=Aphidius ervi|type=mRNA|length=883bp
ATTTGTATTTTATTATACATATCCATTTTTTATATTTTTTTAAAGTATTA
AACAAGTGTTGGTGATGAGTAACTAACGGTGTGGTTGAACAAAAAGTGAG
TTGGCCATCATTGATGACCAACTCACTTCGTGTTAAGACATCGACCAAGT
CACTTTATTTAATAGTCTCATATTATACCTGGCTAAGTAGTTAGTATTCA
GTGCGAGAAACTTGATTTAAATTCAATTATTTTGCATCATTTCTACATAC
ATTTTCACTTGAAATTTAAAATTAATAAATAAATCTGACGCAGATATATT
TTGTACAATGGTACAAAAAATTTATGTTGTATTGAGTTTAATGATGGTGG
CTACACTTGTGTTTCTTTGTTGGTACATTTTTGTGCCACGTCAAACTAAT
GACAACAACTTCAACATTGCTGAGTTATCTGGTGAATGGTGGATGGTTGC
TGGTATTTCCCCGGAACAAAAAATGGGATCGTGCATTCAATACAAAAACG
AGATTAATTCAAGCACCGCTTGGATGCAGGCCAGTATAACAAGTGCAAGA
AATGGTACAAGACAGACGTTGGATTTCAAAGGCAGTGTAAATGGTTCAAG
TATGATTTTAACTTGTCCTCTCAAAGCTGGAGCTCGCTTTGAACACAAAA
TTCTATCTCTGGATTCTAAATATGCTGTTATGCTTGCTTCTTTGATTTCA
CCAAAAACTGGAGAAAATACACAAGGAAACAATTTTGCAATTGTTTTGTC
TCGCAGTAGTGAAGTTATTTCAGACACACAATTTGAAATATTCAAGAAAC
AACTTTCTGGATATTTTGACGATATGACACGTTATGTCAAAGTCGACAAT
ACATGCAATAATAAACAAAATAAAATTGAGTGA

spliced messenger RNA

>AE3000861-RA ID=AE3000861-RA|Name=AE3000861-RA|organism=Aphidius ervi|type=mRNA|length=883bp|location=Sequence derived from alignment at scaffold7:1035661..1036745+ (Aphidius ervi)|Notes=Excludes all bases but those of type(s): exon.  
ATTTGTATTTTATTATACATATCCATTTTTTATATTTTTTTAAAGTATTA
AACAAGTGTTGGTGATGAGTAACTAACGGTGTGGTTGAACAAAAAGTGAG
TTGGCCATCATTGATGACCAACTCACTTCGTGTTAAGACATCGACCAAGT
CACTTTATTTAATAGTCTCATATTATACCTGGCTAAGTAGTTAGTATTCA
GTGCGAGAAACTTGATTTAAATTCAATTATTTTGCATCATTTCTACATAC
ATTTTCACTTGAAATTTAAAATTAATAAATAAATCTGACGCAGATATATT
TTGTACAATGGTACAAAAAATTTATGTTGTATTGAGTTTAATGATGGTGG
CTACACTTGTGTTTCTTTGTTGGTACATTTTTGTGCCACGTCAAACTAAT
GACAACAACTTCAACATTGCTGAGTTATCTGGTGAATGGTGGATGGTTGC
TGGTATTTCCCCGGAACAAAAAATGGGATCGTGCATTCAATACAAAAACG
AGATTAATTCAAGCACCGCTTGGATGCAGGCCAGTATAACAAGTGCAAGA
AATGGTACAAGACAGACGTTGGATTTCAAAGGCAGTGTAAATGGTTCAAG
TATGATTTTAACTTGTCCTCTCAAAGCTGGAGCTCGCTTTGAACACAAAA
TTCTATCTCTGGATTCTAAATATGCTGTTATGCTTGCTTCTTTGATTTCA
CCAAAAACTGGAGAAAATACACAAGGAAACAATTTTGCAATTGTTTTGTC
TCGCAGTAGTGAAGTTATTTCAGACACACAATTTGAAATATTCAAGAAAC
AACTTTCTGGATATTTTGACGATATGACACGTTATGTCAAAGTCGACAAT
ACATGCAATAATAAACAAAATAAAATTGAGTGA

protein sequence of AE3000861-RA

>AE3000861-PA ID=AE3000861-PA|Name=AE3000861-RA|organism=Aphidius ervi|type=polypeptide|length=191bp
MVQKIYVVLSLMMVATLVFLCWYIFVPRQTNDNNFNIAELSGEWWMVAGI
SPEQKMGSCIQYKNEINSSTAWMQASITSARNGTRQTLDFKGSVNGSSMI
LTCPLKAGARFEHKILSLDSKYAVMLASLISPKTGENTQGNNFAIVLSRS
SEVISDTQFEIFKKQLSGYFDDMTRYVKVDNTCNNKQNKIE

mRNA from alignment at scaffold7:1035661..1036745+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>AE3000861-RA ID=AE3000861-RA|Name=AE3000861-RA|organism=Aphidius ervi|type=mRNA|length=1085bp|location=Sequence derived from alignment at scaffold7:1035661..1036745+ (Aphidius ervi)
ATTTGTATTTTATTATACATATCCATTTTTTATATTTTTTTAAAGTATTA
AACAAGTGTTGGTGATGAGTAACTAACGGTGTGGTTGAACAAAAAGTGAG
TTGGCCATCATTGATGACCAACTCACTTCGTGTTAAGACATCGACCAAGT
CACTTTATTTAATAGTCTCATATTATACCTGGCTAAGTAGTTAGTATTCA
GTGCGAGAAACTTGATTTAAATTCAATTATTTTGCATCATTTCTACATAC
ATTTTCACTTGAAATTTAAAATTAATAAATAAATCTGACGCAGATATATT
TTGTACAATGGTACAAAAAATTTATGTTGTATTGAGTTTAATGATGGTGG
CTACACTTGTGTTTCTTTGTTGGTACATTTTTGTGCCACGTCAAACTAAT
GACAACAACTTCAACATTGCTGAGGTATATTAAATTGAAAATTTATTCTA
AGTAATATTAAATAATTAAATAATTTTGTTGTTTTATTTTTTTATTGGTG
GGTTTTATTTTTTTTCCTTTTTTTTTTTTGCAGTTATCTGGTGAATGGTG
GATGGTTGCTGGTATTTCCCCGGAACAAAAAATGGGATCGTGCATTCAAT
ACAAAAACGAGATTAATTCAAGCACCGCTTGGATGCAGGCCAGTATAACA
AGTGCAAGAAATGGTACAAGACAGACGTTGGATTTCAAAGGCAGTGTAAA
TGGTTCAAGTATGATTTTAACTTGTCCTCTCAAAGCTGGAGGTAATTTAA
AAAATGAATAATAATATTTTAAAATATATAATAATCTTTTTAAATAATCA
AACTAGATAATAATATCATTATTATATTTTTAAGCTCGCTTTGAACACAA
AATTCTATCTCTGGATTCTAAATATGCTGTTATGCTTGCTTCTTTGATTT
CACCAAAAACTGGAGAAAATACACAAGGAAACAATTTTGCAATTGTTTTG
TCTCGCAGTAGTGAAGTTATTTCAGACACACAATTTGAAATATTCAAGAA
ACAACTTTCTGGATATTTTGACGATATGACACGTTATGTCAAAGTCGACA
ATACATGCAATAATAAACAAAATAAAATTGAGTGA

Coding sequence (CDS) from alignment at scaffold7:1035661..1036745+

>AE3000861-RA ID=AE3000861-RA|Name=AE3000861-RA|organism=Aphidius ervi|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold7:1035661..1036745+ (Aphidius ervi)
ATGGTACAAAAAATTTATGTTGTATTGAGTTTAATGATGGTGGCTACACT
TGTGTTTCTTTGTTGGTACATTTTTGTGCCACGTCAAACTAATGACAACA
ACTTCAACATTGCTGAGTTATCTGGTGAATGGTGGATGGTTGCTGGTATT
TCCCCGGAACAAAAAATGGGATCGTGCATTCAATACAAAAACGAGATTAA
TTCAAGCACCGCTTGGATGCAGGCCAGTATAACAAGTGCAAGAAATGGTA
CAAGACAGACGTTGGATTTCAAAGGCAGTGTAAATGGTTCAAGTATGATT
TTAACTTGTCCTCTCAAAGCTGGAGCTCGCTTTGAACACAAAATTCTATC
TCTGGATTCTAAATATGCTGTTATGCTTGCTTCTTTGATTTCACCAAAAA
CTGGAGAAAATACACAAGGAAACAATTTTGCAATTGTTTTGTCTCGCAGT
AGTGAAGTTATTTCAGACACACAATTTGAAATATTCAAGAAACAACTTTC
TGGATATTTTGACGATATGACACGTTATGTCAAAGTCGACAATACATGCA
ATAATAAACAAAATAAAATTGAGTGA

Synonyms

The feature 'AE3000861-RA' has the following synonyms


Synonym
maker-scaffold7-augustus-gene-10.75-mRNA-1