Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
AED | 0.45 |
QI | 281|1|1|1|0.8|0.66|6|40|218 |
eAED | 0.45 |
merge warning | 1 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
AG6000673 | AG6000673 | Aphis glycines Ag_bt1 | gene | SBAphidCtg1001 4991532..4996117 - |
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
AG6000673-RA:three_prime_utr | AG6000673-RA:three_prime_utr | Aphis glycines Ag_bt1 | three_prime_UTR | SBAphidCtg1001 4991532..4991571 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
AG6000673-RA:cds | AG6000673-RA:cds | Aphis glycines Ag_bt1 | CDS | SBAphidCtg1001 4995462..4995570 - |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
AG6000673-RA:five_prime_utr | AG6000673-RA:five_prime_utr | Aphis glycines Ag_bt1 | five_prime_UTR | SBAphidCtg1001 4995852..4996117 - |
The following exon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >AG6000673-RA ID=AG6000673-RA|Name=AG6000673-RA|organism=Aphis glycines Ag_bt1|type=mRNA|length=978bp|location=Sequence derived from alignment at SBAphidCtg1001:4991532..4996117- (Aphis glycines Ag_bt1)|Notes=Excludes all bases but those of type(s): exon.
ACCGAATCCATTCGCGCTAATCAGGAACGCACTTTTGCTGCTTCCGTAGA AGCTCGAAAGTTCAAATCGTGTACACCGTTCTTCGTAGCTGACGGTGAAA CGTAATTTTTTCCTTAATGTAATAATAAAACTTGTCCTAGTTCGTAGAAC AAATGACATATTATTATATCGTGCACTGTACAGCGTCCTAACCGAATTAC GCTCATTTAATTATAATAATAACACTAAAGTTCCAGTGACATAATTAAAT TTGTCATCACCATAAGGTGGCGTTTAGGGGTATGGAAGAAAAGGCGATAC TCGACATTTCAGACCTGCGTTGCACAGATACGGATCCCGGAGATACTACT ACGGTACTAGACGGTCTTTTGGGAGCTGGACCGCACTACGATTACGGCGA TGTGACCGGCTGCGACAGTCCTACGGATAGATGCGATGATAACGATCAAT CATCTGGATCTTTGAGCACTGACCAAAATTCCAATAACAACGTCAAGAGG AAACAGCGGAGATACAGAACAACATTCACAAATTTCCAACTGGAAGAATT AGAAAACTCGTTTCAGAAAACACATTACCCTGACGTATTTTTTCGAGAAG AATTGGCAATGCGTATCGACTTGACTGAAGCTAGGGTGCAGGTATGGTTT CAGAATCGTAGAGCCAAATGGCGAAAGCAAGAAAAAACCTTGGTTTCCCA GCATCAGAACCAAAACGAACCAATTATAAGCCCTTGCTTAACAGATAATC CAATATTCGGAAACTCTTCTAGCCTTCTTCCTCAGCCAGACTGGAACAGT CTATGCTCTTATAATTCATTTCAACCATCAGCGACATTCGATAAGGATCT ACAAGCAATTGATATCGACAATGATTTACTTCGGTTCAAAACAAGAGAAC TACATGAAAACGATATGCTCATGTCGCCACCTTCATAAACATTTATTAAT CATTTGTTAAGTAAATTGTTAATTAAAT back to topprotein sequence of AG6000673-RA >AG6000673-PA ID=AG6000673-PA|Name=AG6000673-RA|organism=Aphis glycines Ag_bt1|type=polypeptide|length=218bp
MEEKAILDISDLRCTDTDPGDTTTVLDGLLGAGPHYDYGDVTGCDSPTDR CDDNDQSSGSLSTDQNSNNNVKRKQRRYRTTFTNFQLEELENSFQKTHYP DVFFREELAMRIDLTEARVQVWFQNRRAKWRKQEKTLVSQHQNQNEPIIS PCLTDNPIFGNSSSLLPQPDWNSLCSYNSFQPSATFDKDLQAIDIDNDLL RFKTRELHENDMLMSPPS back to topmRNA from alignment at SBAphidCtg1001:4991532..4996117- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >AG6000673-RA ID=AG6000673-RA|Name=AG6000673-RA|organism=Aphis glycines Ag_bt1|type=mRNA|length=4586bp|location=Sequence derived from alignment at SBAphidCtg1001:4991532..4996117- (Aphis glycines Ag_bt1) ACCGAATCCATTCGCGCTAATCAGGAACGCACTTTTGCTGCTTCCGTAGA
AGCTCGAAAGTTCAAATCGTGTACACCGTTCTTCGTAGCTGACGGTGAAA
CGTAATTTTTTCCTTAATGTAATAATAAAACTTGTCCTAGTTCGTAGAAC
AAATGACATATTATTATATCGTGCACTGTACAGCGTCCTAACCGAATTAC
GCTCATTTAATTATAATAATAACACTAAAGTTCCAGTGACATAATTAAAT
TTGTCATCACCATAAGGTCAGTAGTATAATAATTCACAACCGATATATTC
AGGAGTGTACACACGAGAGGAATCGACCAAAGATTTTTATTTTTTAATAA
TAATTAATAGTTGGGTATAGGTATACTTACTACTTACTCAGTAATTTATA
AATAATTAATTTAATATGATGGTCCATTCACAGTAGGAAAATTGTGTGTA
CACGCAACTGGATGTATTTTACTTAAATGTGGCTATATAGTATAAATTAT
ATAAACGTAATAAATTCTGTATTAAACATGAGGTGGCGTTTAGGGGTATG
GAAGAAAAGGCGATACTCGACATTTCAGACCTGCGTTGCACAGATACGGA
TCCCGGAGATACTACTACGGTACTAGACGGTCTTTTGGGAGCTGGACCGC
ACTACGGTAAGTCGTCAGACAATCATCGTTTTACGTTATTAAATAAAGTA
ATAATTTACTCTGTCGTCGTGTACAGATTACGGCGATGTGACCGGCTGCG
ACAGTCCTACGGATAGATGCGATGATAACGATCAATCATCTGGATCTTTG
AGCACTGACCAAAATTCCAATAACAACGTCAAGAGGAAACAGCGGAGATA
CAGGTAACAATCGCAGTAGGTAGGTACACGAAGTATCTATGGAGTTTTTT
GTTTTTAGAAAGTTTACTGTATACCCAGGGATATAGAATTTCATGTAAAG
TATTTTTTATTAACGTAAATGTATAATATATACATAAATAAAAAAAGCTG
ATATAATTTTTAAAATACTGCAATATACCTACCTACTTAATAAAAGTACC
TTCGCCTATTTTAAAAGGACAGATTTTTACTGGAAATAGATAGGTAGTTG
AGGTTTGAGAATAATATATTTTATTTTTGTATTTCAATTTAAAATTTTTA
AGTACGAAAATTAAATTATTTATTGGGTTTTCATGATCATAAACAATAGT
CGCCGCTTATTGGACTCGTGGTTAATAGACTCGGTTATTGGACTCAAACA
GGCTAGGCTGGTACCGATTCACACGTAGGTATATACTTTTGCATTGAAAA
AATATTGTCTGTTGTACTCACTATACCAGTTAATGAACCATGGGATTCAT
GTATAATGTTAAGAACATATTAACACAATTCGTTAATTTTACCGATTTTA
TGGCTTGTATTTAGACATTTAGACAAAATACTCAGATTTATACTATTTCT
ATGACTTAACGCATTTAAAAGAATTAAAATTTAAAAATATTTTTAAACAT
AATTTTTAAATTATTATTTATATATAAAAAAAAAACATTTTCTAATTTTT
CCATTATCAATTTTCATATTTTTCTTTTCGTCATAAAAGAGAATATTATT
TGAAATACATGAATAAATATATAACATAATAAATATTTATTATTACACAA
TTTTAATTTTAATTTGTTTAGGTATTACAATGCATATTATGTTTATGTTT
TTTTTTTAATTCTTGAGCCTTTTGCTTAATTCGCACATTTGGTAAATGGA
CTCAAATTTCAATTAGTCTGGTCCCAAAATGAACCCAATAAGCGGCGACT
TCTGTACCCAACAGCTATCTATATAATATACCAATGGCTTAACTCTTAAC
GACTAATAAAACTAACTAATACCAATTACAAGCCACAATCGTGAAACTAT
TCTTTATGAACATCAAGTGAAATTATGTTGTTTATTAAAACCTAAATAGC
TTTTGTATTATAATATTAAATTAAAATGTAAAAATATAAATAAACATGCT
TATAATCAAAATCAAAAACAAAAGGAATTATACTTATAAAGCTTATTCTG
GAAAAAGAAAAAAGTAGACCCTATATACTCGTATATATATTAGTTGTACT
AAGCAATAAAACATCATTCATCACCCATTTATATAGACTAGTTTATTTAT
ATAGGTATTATGAAACGCACATTACTATGAAATCGTTCTTAAAAGTGTAA
TTCTATTTTAATTTTTAACAAATAATTATCTAATTAAAAATGATAATACT
AATACCTACTTATATTATCACTTTTAATATGAACAAAAATGATTTCTTAC
GTAAAGAAATTTTGTATATTGTATTATGCGTGCTAATTTTAATTTCAGCT
AACTGTTAGACACTAACACTATCCCGTTGGTCATGTAAACGACTCTTCAT
ATCAGGTGTACTTATATGAAATTTGGATTTCTGTTTTCAGAACAACATTC
ACAAATTTCCAACTGGAAGAATTAGAAAACTCGTTTCAGAAAACACATTA
CCCTGACGTATTTTTTCGAGAAGAATTGGCAATGCGTATCGACTTGACTG
AAGCTAGGGTGCAGGTATAGTATCAATATTGTTCATATTATACCAAATCC
GGATTAAGGACGACAAAGGGCGGAAGGTAAGGACACAATACTGAGGCTTA
TTTCTTTCAACAAAATATATTTTTAATACATTCATAAGAAAACTCTAAAG
ATAAAAAATAAAAACGTTTATATCATAAAAGTTTACAAAATTATAGATTC
ATAATAAATTGATATTTGATGATAATTTGTAAATTATTAAAAATGGAAAT
TATTCCTATTTATTAGAACACATATTGAATCACGTATGGTTCAATTATAA
TATATTGTACCTACCTATGTAGTTATTAAATCATTATAATTAATAAGTAA
TATTAGAAATAAGGAAGGATGAAGTTTTAAAGTTGAAAGGAGCCTAAAAA
TTCTGGGGCCCAATGGTTCTTTAATCCGGATTTCTTTATTACTGGTATTT
AGCATACCATCCACAGTCTGCAGTATAAAATGTATTAAACAAATGTTGTC
TAAACAATTTATAGGTATGGTTTCAGAATCGTAGAGCCAAATGGCGAAAG
CAAGAAAAAACCTTGGTTTCCCAGCATCAGAACCAAAACGAACCAATTAT
AAGCCCTTGCTTAACAGGTTAAAACTTAATTATTAAATTTTATAACTGTA
ATTTTTCTTACATAATAGATATACCTATTGACTTTATAATATTATTTACT
CGTATTGGTTTATACATAATATATAATAGGTACATGTAAACGGCGTTACT
GTGTAATATTAAGTATAGAACCAATATCATTTTTGCTATATTTCAAAAAA
TGATAGTTATGTAATCATTATAAAACTATTTATTTTTAAATTTTATAGTA
AACCTTTTTCTACGTAGGAATTTATTAATTTGAACTTCCTTATTTTCTCT
ATAGTGTCATTGACCGATTGGACTAAATCTAATTACATATTAATCAGTAT
ATTATACTAATGTAAATAATCGTATACACTATACACTTGACAGTTTATCC
TGATACGTACCTATTTTGATTTCGTAAGAATGTGCTAACAATCTAACGTA
TAAGACCGGTATAGGGGGGTTTACTTCCGCATTACTTGGAAAGTGATGTG
TTACCTACTTGGATGTGTTAAATTTTAATTCAATGATGAATTATTAATGA
TTGTACTCAAACGAAAAACGATTCTGATCTTCTGTGTGGAGTATATAATA
TTACAATATACAATATAATTGTTTCTTAAAATAAAGTTTGTTAGATACTG
CATTTATATGGGTAGATAGATTATTATTACTTATTAGTATTTGTTTGGTC
AATATTCTAGATTTAAAGCATTTTTGCTCAACCAATTCCAGCATATCGAA
TGTATCGTAAAATGGCGTAAATAGATTATGAATGTTATAATATCTTAGTT
TAAGATTAACATTAATTTAAGTTAAGATTAGGTTATATTTAGAGAAGGTA
CTTTGATAAGGCTCTAGTCGCTCTACCAATAGGAACTCTGGTTATACTTT
TTTGTTAAGTATATTGTTTTGTTGAAAACTAATTGTATATTGAATATCGC
TATTTTTTAATTATTTAAAAATACCTAGTGTAAATTTCCTACTAGATCAA
ATTTGTTATCATAAAAATATTAAAAACTATCTCTGTGTTAAATTATTGAA
GATTGAAGCACGTTTTTGCTCAAAACGTTATGACTAAATATAATATTTTA
TTTATCATTAAAGACATAGGTTATAGTTTTATATTTATTAGTGCTTTTAT
TATACTTAATATTAAGTAAACAATATATTTCAAAGCACTTTTTTTTTTTT
AGATAATCCAATATTCGGAAACTCTTCTAGCCTTCTTCCTCAGCCAGACT
GGAACAGTCTATGCTCTTATAATTCATTTCAACCATCAGCGACATTCGAT
AAGGATCTACAAGCAATTGATATCGACAATGATTTACTTCGGTTCAAAAC
AAGAGAACTACATGAAAACGATATGCTCATGTCGCCACCTTCATAAACAT
TTATTAATCATTTGTTAAGTAAATTGTTAATTAAAT back to topCoding sequence (CDS) from alignment at SBAphidCtg1001:4991532..4996117- >AG6000673-RA ID=AG6000673-RA|Name=AG6000673-RA|organism=Aphis glycines Ag_bt1|type=CDS|length=657bp|location=Sequence derived from alignment at SBAphidCtg1001:4991532..4996117- (Aphis glycines Ag_bt1) ATGGAAGAAAAGGCGATACTCGACATTTCAGACCTGCGTTGCACAGATAC GGATCCCGGAGATACTACTACGGTACTAGACGGTCTTTTGGGAGCTGGAC CGCACTACGATTACGGCGATGTGACCGGCTGCGACAGTCCTACGGATAGA TGCGATGATAACGATCAATCATCTGGATCTTTGAGCACTGACCAAAATTC CAATAACAACGTCAAGAGGAAACAGCGGAGATACAGAACAACATTCACAA ATTTCCAACTGGAAGAATTAGAAAACTCGTTTCAGAAAACACATTACCCT GACGTATTTTTTCGAGAAGAATTGGCAATGCGTATCGACTTGACTGAAGC TAGGGTGCAGGTATGGTTTCAGAATCGTAGAGCCAAATGGCGAAAGCAAG AAAAAACCTTGGTTTCCCAGCATCAGAACCAAAACGAACCAATTATAAGC CCTTGCTTAACAGATAATCCAATATTCGGAAACTCTTCTAGCCTTCTTCC TCAGCCAGACTGGAACAGTCTATGCTCTTATAATTCATTTCAACCATCAG CGACATTCGATAAGGATCTACAAGCAATTGATATCGACAATGATTTACTT CGGTTCAAAACAAGAGAACTACATGAAAACGATATGCTCATGTCGCCACC TTCATAA back to top
Synonyms
The feature 'AG6000673-RA' has the following synonyms
Synonym |
augustus_masked-SBAphidCtg1001-processed-gene-50.205-mRNA-1 |
|