AG6000638-RA (mRNA) Aphis glycines Ag_bt1

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameAG6000638-RA
Unique NameAG6000638-RA
TypemRNA
OrganismAphis glycines Ag_bt1 (aglycines_bt1)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SBAphidCtg1001contigSBAphidCtg1001:4882332..4882855 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly (v6.0) and Annotation OGS6.0 of Aphis glycines, Biotype 1 (Ag_bt1)2018-01-26
Properties
Property NameValue
AED0.61
QI0|0|0|1|1|1|2|0|113
eAED0.61
merge warning1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
AG6000638AG6000638Aphis glycines Ag_bt1geneSBAphidCtg1001 4882332..4882855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
AG6000638-RAAG6000638-PAAphis glycines Ag_bt1polypeptideSBAphidCtg1001 4882332..4882855 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
AG6000638-RA:1AG6000638-RA:1Aphis glycines Ag_bt1exonSBAphidCtg1001 4882332..4882429 +
AG6000638-RA:2AG6000638-RA:2Aphis glycines Ag_bt1exonSBAphidCtg1001 4882612..4882855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
AG6000638-RA:cdsAG6000638-RA:cdsAphis glycines Ag_bt1CDSSBAphidCtg1001 4882332..4882429 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>AG6000638-RA ID=AG6000638-RA|Name=AG6000638-RA|organism=Aphis glycines Ag_bt1|type=mRNA|length=342bp|location=Sequence derived from alignment at SBAphidCtg1001:4882332..4882855+ (Aphis glycines Ag_bt1)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAGCAGTTGGCGCTGCGGAGCGACATCTTTTTTGGAGCTGATGA
TTATCAGTTAGAAAGACACACACCACCGTTGACCTCTACTACTCACTGGA
TCGTATCCAAAACAGTCACAAAACAACAACATTCACGACTGGCGTTATCA
ACGCGAACTGAGCACGGTTATCATTTATGTTTATTATTATCCGTTGGGGC
ACACGGACCTTTACGGTCGTTGTCGGGCAACGGAAACACGTCAGTAAATT
ATAACTTACCAGTAACCAGTGTGGTCATGGACGATATGATAGTGATCACA
GCTGCTAATAACACGATTCGTGCTAATAATCCATTAGCTTAG
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protein sequence of AG6000638-RA

>AG6000638-PA ID=AG6000638-PA|Name=AG6000638-RA|organism=Aphis glycines Ag_bt1|type=polypeptide|length=113bp
MNKQLALRSDIFFGADDYQLERHTPPLTSTTHWIVSKTVTKQQHSRLALS
TRTEHGYHLCLLLSVGAHGPLRSLSGNGNTSVNYNLPVTSVVMDDMIVIT
AANNTIRANNPLA
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mRNA from alignment at SBAphidCtg1001:4882332..4882855+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>AG6000638-RA ID=AG6000638-RA|Name=AG6000638-RA|organism=Aphis glycines Ag_bt1|type=mRNA|length=524bp|location=Sequence derived from alignment at SBAphidCtg1001:4882332..4882855+ (Aphis glycines Ag_bt1)
ATGAACAAGCAGTTGGCGCTGCGGAGCGACATCTTTTTTGGAGCTGATGA
TTATCAGTTAGAAAGACACACACCACCGTTGACCTCTACTACTCACTGGT
GAGCCAGCAAAACTCCAGTGATTGATGAGCTTTTATCAATCTGCAACCGG
TGAGAAGTCATTGATCATTGTCCGGAGCGTATTGTTAATTGTCTTTGTCT
CCAGCTATCGTCTGATATTCTTCGTTTAGCATTCGCAGCATCAAATAATA
ATGTAACTCGTTGAAAAATTCGAAAATTAGGATCGTATCCAAAACAGTCA
CAAAACAACAACATTCACGACTGGCGTTATCAACGCGAACTGAGCACGGT
TATCATTTATGTTTATTATTATCCGTTGGGGCACACGGACCTTTACGGTC
GTTGTCGGGCAACGGAAACACGTCAGTAAATTATAACTTACCAGTAACCA
GTGTGGTCATGGACGATATGATAGTGATCACAGCTGCTAATAACACGATT
CGTGCTAATAATCCATTAGCTTAG
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Coding sequence (CDS) from alignment at SBAphidCtg1001:4882332..4882855+

>AG6000638-RA ID=AG6000638-RA|Name=AG6000638-RA|organism=Aphis glycines Ag_bt1|type=CDS|length=342bp|location=Sequence derived from alignment at SBAphidCtg1001:4882332..4882855+ (Aphis glycines Ag_bt1)
ATGAACAAGCAGTTGGCGCTGCGGAGCGACATCTTTTTTGGAGCTGATGA
TTATCAGTTAGAAAGACACACACCACCGTTGACCTCTACTACTCACTGGA
TCGTATCCAAAACAGTCACAAAACAACAACATTCACGACTGGCGTTATCA
ACGCGAACTGAGCACGGTTATCATTTATGTTTATTATTATCCGTTGGGGC
ACACGGACCTTTACGGTCGTTGTCGGGCAACGGAAACACGTCAGTAAATT
ATAACTTACCAGTAACCAGTGTGGTCATGGACGATATGATAGTGATCACA
GCTGCTAATAACACGATTCGTGCTAATAATCCATTAGCTTAG
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Synonyms
The feature 'AG6000638-RA' has the following synonyms
Synonym
augustus_masked-SBAphidCtg1001-processed-gene-48.94-mRNA-1