AG6000475-RA (mRNA) Aphis glycines Ag_bt1

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameAG6000475-RA
Unique NameAG6000475-RA
TypemRNA
OrganismAphis glycines Ag_bt1 (aglycines_bt1)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SBAphidCtg1001contigSBAphidCtg1001:4253701..4254087 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly (v6.0) and Annotation OGS6.0 of Aphis glycines, Biotype 1 (Ag_bt1)2018-01-26
Properties
Property NameValue
AED0.48
QI0|0|0|1|0|0|2|0|107
eAED0.48
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
AG6000475AG6000475Aphis glycines Ag_bt1geneSBAphidCtg1001 4253701..4254087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
AG6000475-RAAG6000475-PAAphis glycines Ag_bt1polypeptideSBAphidCtg1001 4253701..4254087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
AG6000475-RA:cdsAG6000475-RA:cdsAphis glycines Ag_bt1CDSSBAphidCtg1001 4254010..4254087 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
AG6000475-RA:1AG6000475-RA:1Aphis glycines Ag_bt1exonSBAphidCtg1001 4253701..4253946 -
AG6000475-RA:2AG6000475-RA:2Aphis glycines Ag_bt1exonSBAphidCtg1001 4254010..4254087 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>AG6000475-RA ID=AG6000475-RA|Name=AG6000475-RA|organism=Aphis glycines Ag_bt1|type=mRNA|length=324bp|location=Sequence derived from alignment at SBAphidCtg1001:4253701..4254087- (Aphis glycines Ag_bt1)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTATTTGTACGTTGTACTCGACCGGCCGTCGAAAACGAAACTGATAC
CGAAGTGCTCGTTGTTATTGTTATTATCACGGAATTGATATGTTCGATCG
ATTGCCGTAAATCGTACGCACAAAACGTTGAGTTGAATCGCGACAAAATG
GCGTTAGGGAAGTCTTATCGTTTGTTCTGTCCCGGGTGTGTACCGAGTAG
TACACTACACTATAGTAAAAATTACAAGAGTACAACAACTACTGAACTAC
GCACCGGGGGTGTAAGAAAGATCCTCCGTGGGCTGTGGCAGCCTGACGGT
TGTATACTGTGTCTACCTATATAG
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protein sequence of AG6000475-RA

>AG6000475-PA ID=AG6000475-PA|Name=AG6000475-RA|organism=Aphis glycines Ag_bt1|type=polypeptide|length=107bp
MLFVRCTRPAVENETDTEVLVVIVIITELICSIDCRKSYAQNVELNRDKM
ALGKSYRLFCPGCVPSSTLHYSKNYKSTTTTELRTGGVRKILRGLWQPDG
CILCLPI
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mRNA from alignment at SBAphidCtg1001:4253701..4254087-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>AG6000475-RA ID=AG6000475-RA|Name=AG6000475-RA|organism=Aphis glycines Ag_bt1|type=mRNA|length=387bp|location=Sequence derived from alignment at SBAphidCtg1001:4253701..4254087- (Aphis glycines Ag_bt1)
ATGTTATTTGTACGTTGTACTCGACCGGCCGTCGAAAACGAAACTGATAC
CGAAGTGCTCGTTGTTATTGTTATTATCGTTAGTCGTCAATTAACAAGTT
AATCTTAAAACTAATATTTCTCCCTGTTGTCACTTCGTCAGACGGAATTG
ATATGTTCGATCGATTGCCGTAAATCGTACGCACAAAACGTTGAGTTGAA
TCGCGACAAAATGGCGTTAGGGAAGTCTTATCGTTTGTTCTGTCCCGGGT
GTGTACCGAGTAGTACACTACACTATAGTAAAAATTACAAGAGTACAACA
ACTACTGAACTACGCACCGGGGGTGTAAGAAAGATCCTCCGTGGGCTGTG
GCAGCCTGACGGTTGTATACTGTGTCTACCTATATAG
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Coding sequence (CDS) from alignment at SBAphidCtg1001:4253701..4254087-

>AG6000475-RA ID=AG6000475-RA|Name=AG6000475-RA|organism=Aphis glycines Ag_bt1|type=CDS|length=324bp|location=Sequence derived from alignment at SBAphidCtg1001:4253701..4254087- (Aphis glycines Ag_bt1)
ATGTTATTTGTACGTTGTACTCGACCGGCCGTCGAAAACGAAACTGATAC
CGAAGTGCTCGTTGTTATTGTTATTATCACGGAATTGATATGTTCGATCG
ATTGCCGTAAATCGTACGCACAAAACGTTGAGTTGAATCGCGACAAAATG
GCGTTAGGGAAGTCTTATCGTTTGTTCTGTCCCGGGTGTGTACCGAGTAG
TACACTACACTATAGTAAAAATTACAAGAGTACAACAACTACTGAACTAC
GCACCGGGGGTGTAAGAAAGATCCTCCGTGGGCTGTGGCAGCCTGACGGT
TGTATACTGTGTCTACCTATATAG
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Synonyms
The feature 'AG6000475-RA' has the following synonyms
Synonym
maker-SBAphidCtg1001-snap-gene-43.358-mRNA-1