Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| AED | 0.42 |
| QI | 225|1|1|1|0.83|0.71|7|266|259 |
| eAED | 0.42 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000165 | Cotesia_flavipes000165 | Cotesia flavipes | gene | scaffold_17 24550..29522 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000165-RA:exon:102 | Cotesia_flavipes000165-RA:exon:102 | Cotesia flavipes | exon | scaffold_17 24550..24646 + |
| Cotesia_flavipes000165-RA:exon:103 | Cotesia_flavipes000165-RA:exon:103 | Cotesia flavipes | exon | scaffold_17 25180..25427 + |
| Cotesia_flavipes000165-RA:exon:104 | Cotesia_flavipes000165-RA:exon:104 | Cotesia flavipes | exon | scaffold_17 27022..27144 + |
| Cotesia_flavipes000165-RA:exon:105 | Cotesia_flavipes000165-RA:exon:105 | Cotesia flavipes | exon | scaffold_17 28443..28610 + |
| Cotesia_flavipes000165-RA:exon:106 | Cotesia_flavipes000165-RA:exon:106 | Cotesia flavipes | exon | scaffold_17 28731..28871 + |
| Cotesia_flavipes000165-RA:exon:107 | Cotesia_flavipes000165-RA:exon:107 | Cotesia flavipes | exon | scaffold_17 28957..29037 + |
| Cotesia_flavipes000165-RA:exon:108 | Cotesia_flavipes000165-RA:exon:108 | Cotesia flavipes | exon | scaffold_17 29110..29522 + |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000165-RA:five_prime_utr | Cotesia_flavipes000165-RA:five_prime_utr | Cotesia flavipes | five_prime_UTR | scaffold_17 24550..24646 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000165-RA:cds | Cotesia_flavipes000165-RA:cds | Cotesia flavipes | CDS | scaffold_17 25308..25427 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000165-RA:three_prime_utr | Cotesia_flavipes000165-RA:three_prime_utr | Cotesia flavipes | three_prime_UTR | scaffold_17 29257..29522 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >Cotesia_flavipes000165-RA ID=Cotesia_flavipes000165-RA|Name=Cotesia_flavipes000165-RA|organism=Cotesia flavipes|type=mRNA|length=1271bp|location=Sequence derived from alignment at scaffold_17:24550..29522+ (Cotesia flavipes)|Notes=Excludes all bases but those of type(s): exon.
GAAAAAAAAAAAAAAATAAAATATTAAATTGTAAACAAAAATATCCTTGA
TAAAAGTCCTTGATATCTGATTACAATTTATTGTGAAACCGATTACGTGG
GAGGACGCCGCGGTTTAATAAAAAGGATACTGTCCGCGTATTTGCGATTA
GTTTTGAACACAATTTACTGCCGATCATTACTGATTTAATTTTGTTAATT
TATTAAAATATAAATAAATAAACAAATGGCTTCTGCATTTTTAAGACGCG
GATTGCAGTCCGTTTTTTCTAAGAGTGTTAACATCGATAAGCGAGTTTTG
CCGAAAACGATCGCTTTATTTGCCGATCAGAGGCCCATTAAACAGCCATT
TAGCTCAACAATGATAAAACGAATGTCGAGCAAAAGGAATGTCCATCAAA
GCCGAGCTTCAGCATCTGTGGACGAGGAAAGCGACAGTGATAGTGACTCC
GATGAAGAACGTGACCTAGGTCAATCAGTTTTTTGGCGAAGAAAAATGAG
AACATTACACAGCCACTTGGACGTTAATAAGGATGGAGTAATAAGCTACG
AAGACTTTATGCTTCTTGCAGACAGATTCGCGGACATTGGTCATCTTACT
CCGGAGGCTAAAAAAGAATTTCAAAAAGTTTTAAGCGACATGTGGCAAGA
ACAATGGGGAGAAATAAGTCCCTACAATCTGGTGGGTGTGGAGCAGTACC
TTGAAGAAATGCATCACGTGCTTAACGACACGTCGCTGAAGAGGAAATGT
CACCATTTTCTGCCTTTCCTTTTCAAGGCGGTTGACAAAGATGGCGACGG
AGAAATATCTGTGGAAGAGTACAAATTATTTTTCAAGTGTTTAGATATAG
ATAACGATCACGCGGTGATCTCCTTCGCCCACATCGACCAGAATGAAGAT
GGAAAAATCACAGAGACAGAGTTTATGAGACTGGGCCGAGAATTTTTCCT
GACTGAAGATCACACTAAACCCAGCAAGCACTTCTGGGGTCCATTAGTTG
ACTAGAAGTTTTTAAAATAAGTTCTTAAGCGTATTGTGATAATTAATATA
TATACTTACATACTGCCCGAGTCGGTGTCTTGTTTTATAATTGTACTGTA
CGATTCATAATCACCGTTGAAAATTATATTGTACTTTTTTTAATAATCTT
AAATATCATTTTTCACTGCACTTATATATTAAAGATTGCTAATACGATAT
ATTTTAATCAATAATCTTTTAAAGTTGTAAAAATTTTATAAGTATTTGTA
TAATAAATATTTTAAAATACC back to topprotein sequence of Cotesia_flavipes000165-RA >Cotesia_flavipes000165-PA ID=Cotesia_flavipes000165-PA|Name=Cotesia_flavipes000165-RA|organism=Cotesia flavipes|type=polypeptide|length=260bp
MASAFLRRGLQSVFSKSVNIDKRVLPKTIALFADQRPIKQPFSSTMIKRM
SSKRNVHQSRASASVDEESDSDSDSDEERDLGQSVFWRRKMRTLHSHLDV
NKDGVISYEDFMLLADRFADIGHLTPEAKKEFQKVLSDMWQEQWGEISPY
NLVGVEQYLEEMHHVLNDTSLKRKCHHFLPFLFKAVDKDGDGEISVEEYK
LFFKCLDIDNDHAVISFAHIDQNEDGKITETEFMRLGREFFLTEDHTKPS
KHFWGPLVD. back to topmRNA from alignment at scaffold_17:24550..29522+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Cotesia_flavipes000165-RA ID=Cotesia_flavipes000165-RA|Name=Cotesia_flavipes000165-RA|organism=Cotesia flavipes|type=mRNA|length=4973bp|location=Sequence derived from alignment at scaffold_17:24550..29522+ (Cotesia flavipes)
GAAAAAAAAAAAAAAATAAAATATTAAATTGTAAACAAAAATATCCTTGA
TAAAAGTCCTTGATATCTGATTACAATTTATTGTGAAACCGATTACGATA
GTTGAACTTTTCTAGTACTAGTTAATAAGTCTGCTGAGTATAAAATCGGT
TGAATAAATTTTATTCCATTGAGCGATACTTGCAACAAGTCACGTACGCG
ATAAAATGTACGTCAACCAGTTTGTTTACTGCAAATCAAAAATCATTAAT
GACGCCCGCTAATTTATTAATATCTCATTATTTATAAATTTGAAATTGAT
AATAATGACGTTTTTATTAATCTAATTTATTTAATTATTTTTCCCAGACG
GAGGTCAAGAACTAGAGACATCAATGCTCACAAGAGCCGGTACTAAAATT
AGTCTATTGATAGCTGGATTCAATTTTAAATATTATCTGTAAAAAATCAT
AATTACTGTCTCTAGATATTTAAAAGCGCAATTGCGACGCCAATGATGAT
GGGCTTGGTGGAAATAAATAAAAAAAAAAAAAAAAAAAAAAAATAAAAAA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAGCGGATAAAGTGGGAGGACGCCGCGGTTTA
ATAAAAAGGATACTGTCCGCGTATTTGCGATTAGTTTTGAACACAATTTA
CTGCCGATCATTACTGATTTAATTTTGTTAATTTATTAAAATATAAATAA
ATAAACAAATGGCTTCTGCATTTTTAAGACGCGGATTGCAGTCCGTTTTT
TCTAAGAGTGTTAACATCGATAAGCGAGTTTTGCCGAAAACGATCGCTTT
ATTTGCCGATCAGAGGCCCATTAAACAGGTAAATATTTTTGTGAAATTAA
AATTAGCTGACAGTGAAAGATATTTTTTTTTTATTAATTTAATTAACAAT
AAAAAAAATTGCACGCTTAGTTTATAAATTTTTTGCATGTGCAATTTTTA
TTTTAATGATTTTATTAATTAAAAAAATTCTAAAAATTGTCAGCTGTCTG
CTAAATTTATTTTTATAAATTTTTTTAATTATTTATCTGCTTATCGGTAT
TAATTTTTACCCATATTTGTTTTTAATATTATAATTATAGTTATTAAAAT
TATATTACCAATCTGCTTTTATTAATTTAATGCAGTTTTTTTTTTTTTGT
GTCAAGCTTTAAAATATGACTGCAGATGAAAACATTGTAGTCGTTGAAAT
TTAAGTTGAAAACATCAGGTTTTACTGCGCAAAATATTCTGGAGGAGGGT
CGTCCCCTTTCTTTAGCCGGTCGCGTTGCTATGGACTGTAAAAAAAATCG
GAAAAAAATATAGAAGGCTCTAGAGGCTTAAAAACATCACTTACGCATGC
AGTTTTTATAATAATAATAATATTGTTATTTCACTTACTTGATCGAGATA
AATTTTGGAGTTAATCCAAGGTGATCGACACTGGTATTAAAATCCTTCGA
TCGTAGGCTGTTTTTAACGAATCTCATTTTTTAAATTTGAATTTTAAATC
GAGTACTCTGAAAAAGGTCATGAGTCAAGTAAAGCTTGAAAAAATTCATT
TGAATTGGTCCCTCATTAAGAAATCTAATTTTTAATTATTCAAAATCTAT
CTAAGTCTTTATTTATATGTTAATCAAAAAAAAAAAAAAATGACATTATT
GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTAAATTATTTTAAAT
AATTATAAATTAGATTTATTAAGGGGTGAATCGAATGTAAACAAAATATA
AAATTATTTTAAAAAGAAAATTTAATAAGTTTGTATGTTAGCGGATTTGT
TTCGTAATCTCTATCGGGTTAATGCACTTACGTGAACTCAATATGTAGAA
AATTGTATTTACAAGTTGCAATACTACTTATGTTTTATAGAATAGAAAAC
TTGTTCATTTAATTGATTCTTATTCAATATAACAAGTTGAAAAATAAAAA
ATTTTCTGTACCTTGATTAAAAAAAAGCATTAAAAATTATTTAAAATAAA
TAATTTAAATACTTTAAAATTTTTTTTTTTTATGCAGATAATTATTATTG
TCAATAATAAAAAAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGATCGCAATTT
TTTCGTACTGTAAAATAAAAAATAAAATTCTATATTCTGTAAAATATAAA
TAAAAAATTAAGTTTGATCAGAAGAAAAATAAATAACAACTCACCGTTGA
TCAAATACCTGAAAAAAAAATCCCCTGTAAAAAACTTTAAAATCAATAGC
ATGATTGTAATTATATTCAACTGATAATGATAATTATCATTATCACATAT
GCAATTATGTTAATCGCCGTCTGGCGTATTAAACAGTGAGTAATATTAAA
ATATAAATTTAAAATTTTTCAGCCATTTAGCTCAACAATGATAAAACGAA
TGTCGAGCAAAAGGAATGTCCATCAAAGCCGAGCTTCAGCATCTGTGGAC
GAGGAAAGCGACAGTGATAGTGACTCCGATGAAGAACGTGACCTAGTGAG
TCTCATATTCATTAAAATGATTGACAATGCGATAAAAATAGCTCGGATTT
AATTTACAAATTTAATTTATAAATTGACTGATCGTTTTATCCGGCTTGCC
ATTTATTGAGCTCCAAAATATTAATTTAATTCTCAAAGGACAGTAGATAC
ATCCTCTTGTTTAACTCATAGTTCATGTCAGGTCATAACTCATAACTCTG
CTGTCCCAATTGCTTGATAAATTTATCCAAGCAATTTTTTAGTTGCACCA
AATAGATAACGCTGCAATGAAGTGCAAAAATACTTTCTATTAATTTTAAT
TGTCGTGCAAAATTTAACGGGAAATACTTACTGCAATGCCTGTACATAGA
CTGCATAAGTTTTCTATGAAAGTATCAGCCGGTCAACGACGCTAACGGTG
CATCTTAAGCCGCTGTCCTTGAAACTGCATCAAAACACCACTTGGTCCGT
GAAATTTTATCCTGTAATCTGAAAAAAAAAATTATTTTAGTTTCATTTAA
ATAAACTGACTCACTCTTTTTATTTAAAACAAAAAGGAAACTGATTGATA
TAATTTAAAAGGTTATCGTCAATGATATCGAGCTAGTGTTTATCAACCTT
CACCCAAATATCATTTTTACTTAAATCGAGTATAGTAATTATTCGCGTTA
GCATATTAATATATTAACTTATGAATAATTATTAGTTACAAGCATTTGCT
AATGATAAGTACGTGTTTTACTCTTTGATTACTCAAGATAATCATGCTTT
GTCTATTAATAGAATAATCGCTGATTTACGAATTAATGATTGTAAAAAAT
AAGTAAATAAATTTTTTATTTTTTTATAAGAGAGAAAAAATTATTGGTAG
AAATTTTTTATGATGTAATTTTGGAGTTTTATCTACTTGATACAAAATTA
TGTTATGAGTAACACAGATTTTATAACTGTTTTGTAGATGCTCAAATAAA
GGCATGTTAGCAGAACTTTATTTGATATTTGATAATTTTTTTGACAATTT
TTAAATTTCTTTAAGTCAAATTTTTTTATAATTTATTTTTTAAAAAATTA
TGACATTAAAATTAACACTTGACTATTTTTTAATTTATACACTTTTCAAC
GAGCTGTAACTCTGAGAAAAATGATCGTAAAGCAAAAAATAAAAAAAAAA
AAGCAAATTGTAGCTCCAAGTGTCTAGTTTTCAGATATGACCATAAAAAA
ATTTTTCCAAATTTTTTTATCATCTTAAAAAACGTCTACGGGCTTAAAAA
AATTTTTTTCCATTTTAATAAATTAATTATAAATTATACTTAGGGTCAAT
CAGTTTTTTGGCGAAGAAAAATGAGAACATTACACAGCCACTTGGACGTT
AATAAGGATGGAGTAATAAGCTACGAAGACTTTATGCTTCTTGCAGACAG
ATTCGCGGACATTGGTCATCTTACTCCGGAGGCTAAAAAAGAATTTCAAA
AAGTTTTAAGCGTAAGTATTATTTAATCAATAAAAACAGAAAGTAAATAA
ACAAAGAATAAAACCTTGAAATTGTTTGTATAAATAAAATGTGGGTTCCA
TTTGAATAAACGATTGGTTTATTGTTTGTAGGACATGTGGCAAGAACAAT
GGGGAGAAATAAGTCCCTACAATCTGGTGGGTGTGGAGCAGTACCTTGAA
GAAATGCATCACGTGCTTAACGACACGTCGCTGAAGAGGAAATGTCACCA
TTTTCTGCCTTTCCTTTTCAAGGTACGTAAATATTATTGTTTTTATTCAC
AATTTTTCAATTGTTTTTTTGTTTAGTTACTTGATAATATTTATCATCTG
TTTGCAGGCGGTTGACAAAGATGGCGACGGAGAAATATCTGTGGAAGAGT
ACAAATTATTTTTCAAGTGTTTAGATATAGATAACGATGTAAGTTTGTTT
TTTTTATTAATTAATTAATTCATTTCTCGGCTTTTTAATTATTAAAACGG
CTACTTACAGCACGCGGTGATCTCCTTCGCCCACATCGACCAGAATGAAG
ATGGAAAAATCACAGAGACAGAGTTTATGAGACTGGGCCGAGAATTTTTC
CTGACTGAAGATCACACTAAACCCAGCAAGCACTTCTGGGGTCCATTAGT
TGACTAGAAGTTTTTAAAATAAGTTCTTAAGCGTATTGTGATAATTAATA
TATATACTTACATACTGCCCGAGTCGGTGTCTTGTTTTATAATTGTACTG
TACGATTCATAATCACCGTTGAAAATTATATTGTACTTTTTTTAATAATC
TTAAATATCATTTTTCACTGCACTTATATATTAAAGATTGCTAATACGAT
ATATTTTAATCAATAATCTTTTAAAGTTGTAAAAATTTTATAAGTATTTG
TATAATAAATATTTTAAAATACC back to topCoding sequence (CDS) from alignment at scaffold_17:24550..29522+ >Cotesia_flavipes000165-RA ID=Cotesia_flavipes000165-RA|Name=Cotesia_flavipes000165-RA|organism=Cotesia flavipes|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_17:24550..29522+ (Cotesia flavipes)
ATGGCTTCTGCATTTTTAAGACGCGGATTGCAGTCCGTTTTTTCTAAGAG
TGTTAACATCGATAAGCGAGTTTTGCCGAAAACGATCGCTTTATTTGCCG
ATCAGAGGCCCATTAAACAGCCATTTAGCTCAACAATGATAAAACGAATG
TCGAGCAAAAGGAATGTCCATCAAAGCCGAGCTTCAGCATCTGTGGACGA
GGAAAGCGACAGTGATAGTGACTCCGATGAAGAACGTGACCTAGGTCAAT
CAGTTTTTTGGCGAAGAAAAATGAGAACATTACACAGCCACTTGGACGTT
AATAAGGATGGAGTAATAAGCTACGAAGACTTTATGCTTCTTGCAGACAG
ATTCGCGGACATTGGTCATCTTACTCCGGAGGCTAAAAAAGAATTTCAAA
AAGTTTTAAGCGACATGTGGCAAGAACAATGGGGAGAAATAAGTCCCTAC
AATCTGGTGGGTGTGGAGCAGTACCTTGAAGAAATGCATCACGTGCTTAA
CGACACGTCGCTGAAGAGGAAATGTCACCATTTTCTGCCTTTCCTTTTCA
AGGCGGTTGACAAAGATGGCGACGGAGAAATATCTGTGGAAGAGTACAAA
TTATTTTTCAAGTGTTTAGATATAGATAACGATCACGCGGTGATCTCCTT
CGCCCACATCGACCAGAATGAAGATGGAAAAATCACAGAGACAGAGTTTA
TGAGACTGGGCCGAGAATTTTTCCTGACTGAAGATCACACTAAACCCAGC
AAGCACTTCTGGGGTCCATTAGTTGACTAG back to top
Synonyms
The feature 'Cotesia_flavipes000165-RA' has the following synonyms
| Synonym |
|---|
| maker-scaffold_17-augustus-gene-0.69-mRNA-1 |
|