Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| AED | 0.20 |
| QI | 0|0|0.33|1|0|0|3|14|102 |
| eAED | 0.55 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000166 | Cotesia_flavipes000166 | Cotesia flavipes | gene | scaffold_17 27527..28850 - |
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000166-RA:three_prime_utr | Cotesia_flavipes000166-RA:three_prime_utr | Cotesia flavipes | three_prime_UTR | scaffold_17 27527..27540 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000166-RA:cds | Cotesia_flavipes000166-RA:cds | Cotesia flavipes | CDS | scaffold_17 28711..28850 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000166-RA:exon:171 | Cotesia_flavipes000166-RA:exon:171 | Cotesia flavipes | exon | scaffold_17 28711..28850 - |
| Cotesia_flavipes000166-RA:exon:172 | Cotesia_flavipes000166-RA:exon:172 | Cotesia flavipes | exon | scaffold_17 28483..28581 - |
| Cotesia_flavipes000166-RA:exon:173 | Cotesia_flavipes000166-RA:exon:173 | Cotesia flavipes | exon | scaffold_17 27527..27610 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >Cotesia_flavipes000166-RA ID=Cotesia_flavipes000166-RA|Name=Cotesia_flavipes000166-RA|organism=Cotesia flavipes|type=mRNA|length=323bp|location=Sequence derived from alignment at scaffold_17:27527..28850- (Cotesia flavipes)|Notes=Excludes all bases but those of type(s): exon.
ATGGTGACATTTCCTCTTCAGCGACGTGTCGTTAAGCACGTGATGCATTT
CTTCAAGGTACTGCTCCACACCCACCAGATTGTAGGGACTTATTTCTCCC
CATTGTTCTTGCCACATGTCCTACAAACAATAAACCAATCCCTCCGGAGT
AAGATGACCAATGTCCGCGAATCTGTCTGCAAGAAGCATAAAGTCTTCGT
AGCTTATTACTCCATCCTTATTAACGTCCAAGTGGCTGTGATAAAATTTC
ACGGACCAAGTGGTGTTTTGATGCAGTTTCAAGGACAGCGGCTTAAGATG
CACCGTTAGCGTCGTTGACCGGC back to topprotein sequence of Cotesia_flavipes000166-RA >Cotesia_flavipes000166-PA ID=Cotesia_flavipes000166-PA|Name=Cotesia_flavipes000166-RA|organism=Cotesia flavipes|type=polypeptide|length=103bp
MVTFPLQRRVVKHVMHFFKVLLHTHQIVGTYFSPLFLPHVLQTINQSLRS
KMTNVRESVCKKHKVFVAYYSILINVQVAVIKFHGPSGVLMQFQGQRLKM
HR. back to topmRNA from alignment at scaffold_17:27527..28850- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Cotesia_flavipes000166-RA ID=Cotesia_flavipes000166-RA|Name=Cotesia_flavipes000166-RA|organism=Cotesia flavipes|type=mRNA|length=1324bp|location=Sequence derived from alignment at scaffold_17:27527..28850- (Cotesia flavipes)
ATGGTGACATTTCCTCTTCAGCGACGTGTCGTTAAGCACGTGATGCATTT
CTTCAAGGTACTGCTCCACACCCACCAGATTGTAGGGACTTATTTCTCCC
CATTGTTCTTGCCACATGTCCTACAAACAATAAACCAATCGTTTATTCAA
ATGGAACCCACATTTTATTTATACAAACAATTTCAAGGTTTTATTCTTTG
TTTATTTACTTTCTGTTTTTATTGATTAAATAATACTTACGCTTAAAACT
TTTTGAAATTCTTTTTTAGCCTCCGGAGTAAGATGACCAATGTCCGCGAA
TCTGTCTGCAAGAAGCATAAAGTCTTCGTAGCTTATTACTCCATCCTTAT
TAACGTCCAAGTGGCTGTGTAATGTTCTCATTTTTCTTCGCCAAAAAACT
GATTGACCCTAAGTATAATTTATAATTAATTTATTAAAATGGAAAAAAAT
TTTTTTAAGCCCGTAGACGTTTTTTAAGATGATAAAAAAATTTGGAAAAA
TTTTTTTATGGTCATATCTGAAAACTAGACACTTGGAGCTACAATTTGCT
TTTTTTTTTTTATTTTTTGCTTTACGATCATTTTTCTCAGAGTTACAGCT
CGTTGAAAAGTGTATAAATTAAAAAATAGTCAAGTGTTAATTTTAATGTC
ATAATTTTTTAAAAAATAAATTATAAAAAAATTTGACTTAAAGAAATTTA
AAAATTGTCAAAAAAATTATCAAATATCAAATAAAGTTCTGCTAACATGC
CTTTATTTGAGCATCTACAAAACAGTTATAAAATCTGTGTTACTCATAAC
ATAATTTTGTATCAAGTAGATAAAACTCCAAAATTACATCATAAAAAATT
TCTACCAATAATTTTTTCTCTCTTATAAAAAAATAAAAAATTTATTTACT
TATTTTTTACAATCATTAATTCGTAAATCAGCGATTATTCTATTAATAGA
CAAAGCATGATTATCTTGAGTAATCAAAGAGTAAAACACGTACTTATCAT
TAGCAAATGCTTGTAACTAATAATTATTCATAAGTTAATATATTAATATG
CTAACGCGAATAATTACTATACTCGATTTAAGTAAAAATGATATTTGGGT
GAAGGTTGATAAACACTAGCTCGATATCATTGACGATAACCTTTTAAATT
ATATCAATCAGTTTCCTTTTTGTTTTAAATAAAAAGAGTGAGTCAGTTTA
TTTAAATGAAACTAAAATAATTTTTTTTTTCAGATTACAGGATAAAATTT
CACGGACCAAGTGGTGTTTTGATGCAGTTTCAAGGACAGCGGCTTAAGAT
GCACCGTTAGCGTCGTTGACCGGC back to topCoding sequence (CDS) from alignment at scaffold_17:27527..28850- >Cotesia_flavipes000166-RA ID=Cotesia_flavipes000166-RA|Name=Cotesia_flavipes000166-RA|organism=Cotesia flavipes|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_17:27527..28850- (Cotesia flavipes)
ATGGTGACATTTCCTCTTCAGCGACGTGTCGTTAAGCACGTGATGCATTT
CTTCAAGGTACTGCTCCACACCCACCAGATTGTAGGGACTTATTTCTCCC
CATTGTTCTTGCCACATGTCCTACAAACAATAAACCAATCCCTCCGGAGT
AAGATGACCAATGTCCGCGAATCTGTCTGCAAGAAGCATAAAGTCTTCGT
AGCTTATTACTCCATCCTTATTAACGTCCAAGTGGCTGTGATAAAATTTC
ACGGACCAAGTGGTGTTTTGATGCAGTTTCAAGGACAGCGGCTTAAGATG
CACCGTTAG back to top
Synonyms
The feature 'Cotesia_flavipes000166-RA' has the following synonyms
| Synonym |
|---|
| maker-scaffold_17-snap-gene-0.110-mRNA-1 |
|