Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| AED | 0.75 |
| QI | 0|0|0.33|0.66|1|1|3|0|73 |
| eAED | 0.81 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000168 | Cotesia_flavipes000168 | Cotesia flavipes | gene | scaffold_17 39514..40967 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000168-RA:exon:121 | Cotesia_flavipes000168-RA:exon:121 | Cotesia flavipes | exon | scaffold_17 39514..39628 + |
| Cotesia_flavipes000168-RA:exon:122 | Cotesia_flavipes000168-RA:exon:122 | Cotesia flavipes | exon | scaffold_17 40371..40451 + |
| Cotesia_flavipes000168-RA:exon:123 | Cotesia_flavipes000168-RA:exon:123 | Cotesia flavipes | exon | scaffold_17 40942..40967 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000168-RA:cds | Cotesia_flavipes000168-RA:cds | Cotesia flavipes | CDS | scaffold_17 39514..39628 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >Cotesia_flavipes000168-RA ID=Cotesia_flavipes000168-RA|Name=Cotesia_flavipes000168-RA|organism=Cotesia flavipes|type=mRNA|length=222bp|location=Sequence derived from alignment at scaffold_17:39514..40967+ (Cotesia flavipes)|Notes=Excludes all bases but those of type(s): exon.
ATGATCACCTACACAACCATCCTAAATTTTCACCCAACCAAGTACCACCA
ATCATCACCACCAACCACCAATACTACTACTACTACTACCACTACTACAT
GTTCACAGTTGTCTGATCCAGGTCGCGCAGTCCACGTAGGAGATCGCTCA
CTCGCAGCCGCAGCCGAGATCGTCGTTCCAGATCTGATTCCCGACGTGTA
TTTGTATGAAAAAACAGTTTAA back to topprotein sequence of Cotesia_flavipes000168-RA >Cotesia_flavipes000168-PA ID=Cotesia_flavipes000168-PA|Name=Cotesia_flavipes000168-RA|organism=Cotesia flavipes|type=polypeptide|length=74bp
MITYTTILNFHPTKYHQSSPPTTNTTTTTTTTTCSQLSDPGRAVHVGDRS
LAAAAEIVVPDLIPDVYLYEKTV. back to topmRNA from alignment at scaffold_17:39514..40967+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Cotesia_flavipes000168-RA ID=Cotesia_flavipes000168-RA|Name=Cotesia_flavipes000168-RA|organism=Cotesia flavipes|type=mRNA|length=1454bp|location=Sequence derived from alignment at scaffold_17:39514..40967+ (Cotesia flavipes)
ATGATCACCTACACAACCATCCTAAATTTTCACCCAACCAAGTACCACCA
ATCATCACCACCAACCACCAATACTACTACTACTACTACCACTACTACAT
GTTCACAGTTGTCTGGTATTTCACAGATTTTCAAAAATTTTTTATTATCT
GTTTACATACTCTGACTTTTCAGGAATATTAAATTAAAATTAATTATTTT
ATAAAAAAAAAAAAAAAATTGAATAATCTATATTATTAAAAAATTAAGCA
AAACCATGTATCTTGTTAAATATTGACATTTTCAAAGATATAAGCTCATC
CTGATATCACACTCATCAAGACCTTTCATTTGAGTACCCACATCAATTTT
TCATATATTTATATATATTATATATATATATAAATATATGAAAAATATAT
AAAAATGCATGTGGGTACTCAAATGAAAGCTCTTGATGAGTGTAACATCG
GGATTACCTTATATTTTAAAAAATGTCAATAATTAAGAAAGTATAGTGCA
ATTTAACAATAGTCATTATTTAATAAATGCTAGTTAATTTATAATTTACC
CTGAGAAGTCGTGTTTCATCATAGTACAATAACATTCATATTTACATTCG
TTTAATTTAAAAATTAATCAATTTTCCTTAAAATAAAATTTATCAAAAAA
TAACACTTAATTGATCAATTGAAATAATTGTGATAACATTTTAATCCCTA
GGAAAAATAAAAGCATTAATTTAAAACTCGAATATTATTTTGCTGTACAA
CATTAAAATTACTTGGCAAAAAATCTTCGAGCACTTTAACATGTTAGATA
CTTGTTTTATTATTTATTCGATAATAATTGCTCTAATTTACTGTTCCTCT
ATTTTAGATCCAGGTCGCGCAGTCCACGTAGGAGATCGCTCACTCGCAGC
CGCAGCCGAGATCGTCGTTCCAGATCTGATTCCCGACGGTAATTCATTTA
TTTCTTCTTATCTGATCATTTAATCGCTATTCCTCATTAGATTAATAATT
ATTATCCTATTATGTTGCAGCTAAATTCAAGAAGAAGCGAACAAAATACA
AAAATCCTTACAAATTAACTAAGAATAATAATTATAATAATAATAATAAT
AATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAAAAC
TACCTTTATTTGTATATAAACTTTCACATTTAAAATAAATAAGATTTCAA
TAACTAGATCAGCTTTACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAACTCATGAAATTAATCGTGAACAATTTTGCATAATT
ATGACAATTTTTAATATCTATAAAATTGTCTTATCATTAATCAACGACGC
AGTTTATAAATTAAAGTAATTAAAAATAATAATTTTATTTCATTTGTAAA
GAAATAATTTCTTTTAATTATTTAAAAGTGTATTTGTATGAAAAAACAGT
TTAA back to topCoding sequence (CDS) from alignment at scaffold_17:39514..40967+ >Cotesia_flavipes000168-RA ID=Cotesia_flavipes000168-RA|Name=Cotesia_flavipes000168-RA|organism=Cotesia flavipes|type=CDS|length=222bp|location=Sequence derived from alignment at scaffold_17:39514..40967+ (Cotesia flavipes)
ATGATCACCTACACAACCATCCTAAATTTTCACCCAACCAAGTACCACCA
ATCATCACCACCAACCACCAATACTACTACTACTACTACCACTACTACAT
GTTCACAGTTGTCTGATCCAGGTCGCGCAGTCCACGTAGGAGATCGCTCA
CTCGCAGCCGCAGCCGAGATCGTCGTTCCAGATCTGATTCCCGACGTGTA
TTTGTATGAAAAAACAGTTTAA back to top
Synonyms
The feature 'Cotesia_flavipes000168-RA' has the following synonyms
| Synonym |
|---|
| snap_masked-scaffold_17-processed-gene-0.34-mRNA-1 |
|