Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| AED | 0.42 |
| QI | 0|0.5|0.66|0.66|0|0.33|3|90|79 |
| eAED | 0.42 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000170 | Cotesia_flavipes000170 | Cotesia flavipes | gene | scaffold_17 47205..48717 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000170-RA:exon:99 | Cotesia_flavipes000170-RA:exon:99 | Cotesia flavipes | exon | scaffold_17 47205..47207 + |
| Cotesia_flavipes000170-RA:exon:100 | Cotesia_flavipes000170-RA:exon:100 | Cotesia flavipes | exon | scaffold_17 48115..48178 + |
| Cotesia_flavipes000170-RA:exon:101 | Cotesia_flavipes000170-RA:exon:101 | Cotesia flavipes | exon | scaffold_17 48455..48717 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000170-RA:cds | Cotesia_flavipes000170-RA:cds | Cotesia flavipes | CDS | scaffold_17 47205..47207 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000170-RA:three_prime_utr | Cotesia_flavipes000170-RA:three_prime_utr | Cotesia flavipes | three_prime_UTR | scaffold_17 48628..48717 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >Cotesia_flavipes000170-RA ID=Cotesia_flavipes000170-RA|Name=Cotesia_flavipes000170-RA|organism=Cotesia flavipes|type=mRNA|length=330bp|location=Sequence derived from alignment at scaffold_17:47205..48717+ (Cotesia flavipes)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGAAGTGTTCGAAGTACTTGGTGCTCGAGGCATTTAACCGGCACGC
GATTCCACCTTACACTTCGTGGGGACTCGATGAGTCACGAAGGAGTTTTA
ATGTTGCGGGAAAAAATTCGGCTCCTGACTTCTTAGAGAAGAGGGAAAGG
CAAGTGCACGGATGCAGAGCACACTTGGACGTCGGCATGATCGGGCAAAG
GAGTTTAACAAGTCGGAAAGAGGAGAATGAGTGGATGTAGTAGGTTGTCA
GAGCCTCCGGGGCAAATTGCACCATCCGACAGTTAGACCCCCTTGGGCGA
ATCCGCGGCCTTATTTACCCTTCTCTGGTC back to topprotein sequence of Cotesia_flavipes000170-RA >Cotesia_flavipes000170-PA ID=Cotesia_flavipes000170-PA|Name=Cotesia_flavipes000170-RA|organism=Cotesia flavipes|type=polypeptide|length=80bp
MEKCSKYLVLEAFNRHAIPPYTSWGLDESRRSFNVAGKNSAPDFLEKRER
QVHGCRAHLDVGMIGQRSLTSRKEENEWM. back to topmRNA from alignment at scaffold_17:47205..48717+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Cotesia_flavipes000170-RA ID=Cotesia_flavipes000170-RA|Name=Cotesia_flavipes000170-RA|organism=Cotesia flavipes|type=mRNA|length=1513bp|location=Sequence derived from alignment at scaffold_17:47205..48717+ (Cotesia flavipes)
ATGGTATTAAATGGAAAAACTAAAGATTAAAAAGTAATATATCACGTTAA
CTAATCACTGAAGAAATATTATCGTTTGAGGTGTTAATATTCTTTAAATT
AAGACTTTGTTAAACTTAGCTTCAGGCATCGCCTACCGTCGGTTTACTTT
GCTGATTGGTATTTCGCGGTCGAGGACACCTTAACTGACTTTTAATTATT
TATTTTCATTCATTATGCACTGTTAATCTCCACCAGAGATTACAGTGATT
GTTTATTCATAAAACATCTTTAAAAAATAATATTCTTGATGTCTTCATTT
TTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCACTATCATTGTTTAGGATAATATTTCATTAAC
TCAAGACAATTAGCTACATTATATCTGCATTAATCCAAAGAATGTCTATT
ACACATCTAAAACAACCAGGTGGGCCCTATTGACAAATATTAACAAGCTA
GTCTTTCTTCTTTTTCAATACAAGCTGTAAAAAAAATTACAGTCACTCAC
TTTGTAATTTAGACTTGCGATATCTATCAATAGACTTTATTAATTAACAA
AATTATTTTTTCTATTCATTTCAGAGGAGTTGAACAAACAATCCTACAAA
AAATTTTCATTTAAATCCCGGTAGTTTATTTATAATAGAGAAAATTGTGT
TAAAACCGGAGGAGTTTATCTTTGGACGCCATTTTTGAATCTAGCGGCGC
GAATAGTAATTTGAAAATAAAAAGGCGGGATTTTTAAAATAATTATAATT
TAAAAAGGTTAAGTGTTAACGAAAAGGAGCGTTTGGACAAAAGTAGGTAT
TAAAGTATCTTAAATTTAAATTGACACTCCTCTTACTTTATAATAATAAT
TTTATTTTAGGAGAAGTGTTCGAAGTACTTGGTGCTCGAGGCATTTAACC
GGCACGCGATTCCACCTTACACTTGTAAGTATATACTCTAAGTACAGCGT
ATTAATTTATATATAAATACTCGATCAAGCAAACCAATGTCGATTTAATC
GTAATAAATTACATCTTGCGTAAAAAACTAATGAAACAGGATTTTTAAAA
ATCTAAATCGAGTATAATAAATTAATTGGCTTGTATTTAAATAAATATTC
GTAATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTACTTTTCAG
CGTGGGGACTCGATGAGTCACGAAGGAGTTTTAATGTTGCGGGAAAAAAT
TCGGCTCCTGACTTCTTAGAGAAGAGGGAAAGGCAAGTGCACGGATGCAG
AGCACACTTGGACGTCGGCATGATCGGGCAAAGGAGTTTAACAAGTCGGA
AAGAGGAGAATGAGTGGATGTAGTAGGTTGTCAGAGCCTCCGGGGCAAAT
TGCACCATCCGACAGTTAGACCCCCTTGGGCGAATCCGCGGCCTTATTTA
CCCTTCTCTGGTC back to topCoding sequence (CDS) from alignment at scaffold_17:47205..48717+ >Cotesia_flavipes000170-RA ID=Cotesia_flavipes000170-RA|Name=Cotesia_flavipes000170-RA|organism=Cotesia flavipes|type=CDS|length=240bp|location=Sequence derived from alignment at scaffold_17:47205..48717+ (Cotesia flavipes)
ATGGAGAAGTGTTCGAAGTACTTGGTGCTCGAGGCATTTAACCGGCACGC
GATTCCACCTTACACTTCGTGGGGACTCGATGAGTCACGAAGGAGTTTTA
ATGTTGCGGGAAAAAATTCGGCTCCTGACTTCTTAGAGAAGAGGGAAAGG
CAAGTGCACGGATGCAGAGCACACTTGGACGTCGGCATGATCGGGCAAAG
GAGTTTAACAAGTCGGAAAGAGGAGAATGAGTGGATGTAG back to top
Synonyms
The feature 'Cotesia_flavipes000170-RA' has the following synonyms
| Synonym |
|---|
| maker-scaffold_17-augustus-gene-0.76-mRNA-1 |
|