Cotesia_vestalis006236-RA (mRNA) Cotesia vestalis

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1333	contig	scaffold_1333:18185..21966 - View in Apollo

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Cotesia_vestalis006236	Cotesia_vestalis006236	Cotesia vestalis	gene	scaffold_1333 18185..21966 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_vestalis006236-RA	Cotesia_vestalis006236-PA	Cotesia vestalis	polypeptide	scaffold_1333 18390..21547 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_vestalis006236-RA:three_prime_utr	Cotesia_vestalis006236-RA:three_prime_utr	Cotesia vestalis	three_prime_UTR	scaffold_1333 18185..18389 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_vestalis006236-RA:cds	Cotesia_vestalis006236-RA:cds	Cotesia vestalis	CDS	scaffold_1333 21439..21547 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_vestalis006236-RA:five_prime_utr	Cotesia_vestalis006236-RA:five_prime_utr	Cotesia vestalis	five_prime_UTR	scaffold_1333 21548..21966 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_vestalis006236-RA:exon:2180	Cotesia_vestalis006236-RA:exon:2180	Cotesia vestalis	exon	scaffold_1333 21439..21966 -
Cotesia_vestalis006236-RA:exon:2181	Cotesia_vestalis006236-RA:exon:2181	Cotesia vestalis	exon	scaffold_1333 21024..21189 -
Cotesia_vestalis006236-RA:exon:2182	Cotesia_vestalis006236-RA:exon:2182	Cotesia vestalis	exon	scaffold_1333 20636..20952 -
Cotesia_vestalis006236-RA:exon:2183	Cotesia_vestalis006236-RA:exon:2183	Cotesia vestalis	exon	scaffold_1333 20246..20356 -
Cotesia_vestalis006236-RA:exon:2184	Cotesia_vestalis006236-RA:exon:2184	Cotesia vestalis	exon	scaffold_1333 19920..20185 -
Cotesia_vestalis006236-RA:exon:2185	Cotesia_vestalis006236-RA:exon:2185	Cotesia vestalis	exon	scaffold_1333 18185..19025 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold_1333:18185..21966-
coding sequence from alignment at scaffold_1333:18185..21966-

spliced messenger RNA

>Cotesia_vestalis006236-RA ID=Cotesia_vestalis006236-RA|Name=Cotesia_vestalis006236-RA|organism=Cotesia vestalis|type=mRNA|length=2229bp|location=Sequence derived from alignment at scaffold_1333:18185..21966- (Cotesia vestalis)|Notes=Excludes all bases but those of type(s): exon.  
TTTAATTTTACTATTTCTTCTTGCGTGAAGTATACTTACTTGTTAATTAA
ATAAAATAAAATGAAGGTAAAAGCTAAAACTAAAGTTTAAGCTTCTACTT
GAATATTGTACACGTTCCAAGGACCGAGGATCCGGTTTTCAGTTACTCAA
ATTACCTTTACTTCTTGGTACGTTGTTGTTTAATATTATATGTTTCATTC
TAGTACATTTTATTCTTACACTAGTCTTCGCAGTTTGCAATCTGGAATAA
GACAGCTAGTGCAGATTATTTAGAACTCGAGAGGATTTTGAAATAGAATA
TTATTTTTTTAAGTGTTTTGTATCCAGAAGATATTATATGTCTTCTCATA
TATGTGGACATGTAAATATTATTTTTATTATTAAATAATATATGTGGATG
ATTATTTTACAGGTTGGATATGTTAACCGAGGACAATGACCCAACTAAAC
CGGCAGGGGTTTTAGACAATACTGGAAATGTTTCGTCCTCGACGGAAAGT
ACGCTTCAACACCCTCGTGTTAATAATGAAACTGAAGTAAAAAATGAAGT
ACAAGACTGTCCAGAAAATGAAAATGTACCGGGCAGTGAATTGTACGTTG
ATGAAAATATAGACGATAAAGAACAGGAGTATCCTGATTCTATGGAAAAG
TCTGACTATAGTACTCTTTATGGAGCTAATCAGTATTACAACAGTTTATA
TAATTCTCCTTCATATGGATCAGTAACAAAAAATTCACCGAGCCTTCAAA
GCTCGTATTTAAGTTCATACACAACTCCGAGCCCGATGGCCCAGTACGGC
TCGTATCCTGGATACAACAGCAGTAGTTCAACATTTTCTCCAGTGGGTCA
AAATATTTCTTCAGCCTCTCAGAAATTAGACTACAGCGCGTACAGTAGCA
CCTGTCTCTATGGAAATGATCGGATGCCGCTTCAATATTCCGGGTACTAT
CCGATGCCGGGATATCATTCGACATCCTCGTCATTTAATATCGGAAACCT
TAATTTTACAGATTCAAACAAGGCGAGTAGTCTCACCCTGGACTCATCCG
GCCACGACGCCAATGATTTAACGACCCGCGACACTATAGAAGGTAAAAAT
AAGAAAAAGATGGATAGAACAAGCGCATCAGCGAAGCCCTGCAAGCGCGG
AAGACGTCAAAGCGGAAGCGGAAACAGTATTGGATCCGCCGATACTACTG
AAGGCGGCACGGATCGGATATTCATCTGGGACCTTGATGAAACCATAGTT
GTGTTCCATTCCCTGCTTACTGGACAGTTTGCGACCAAGCATGGCAAGGA
CCCGGCGTTGTTGGCTCAGCTGGCGTACAGGATGGAAGAAATGATATTCA
ATTTGGCAGACACACATTTCTTCTTCAATGACGTTGAGGATTGCGATCAA
GTGCACATTGATGACGTTTCATCAGACGACAATGGTCAAGATTTATCCTC
GTACAACTTCGCAGCAGATGGATTCCAATGTGCGTCTGCAAACAATGGAA
TTTGTCTGGCCTCTGGAGTCCGTGGTGGCGTAGACTGGATGCGAAAGCTG
GCCTTTCGTTACAGAAAAATAAAGGAAACCTACAGCAATTGCAGGAACAA
CGTAGGCGGTTTACTGGGAGCTAAACGGGAGTCCTGGCTGCAATTGAGAT
CGGAAATTGAGCTGCTCACTGACAACTGGCTCACATCTGCTGTCAAGTGT
CTCAGTCTCATCAGCAAGCGCAGTCACTGTGTTAACATTCTTGTAACCAC
CACACAACTCGTTCCTGCGCTGTCCAAAGTGCTTCTATTTGGTCTAGGAG
GGCTTTTTCCTATTGAGAATATTTATTCAGCGACTAAAATTGGTAAAGAG
AGTTGCTTCGGACGAGTTGTAGCTAAATTTGGAAGGAGATGCACCTATGT
AGTCATTGGTGATGGCTCTGATGAAGAAACTGCTGCTCGAGCGCACAATT
TTCCCTTCTGGAGGATAAATAGTCACTCGGATACTCAAGCGCTCTACAAT
GCCCTTGAAATGGGCTTTCTTTAATTTTTTTTTTTTTATAAAAATATTTA
AAGCGAAGATATATCTTCGCTACATCTCAACTTTTCGTCATTCCTAATTA
GTTATTATTATTAAGCCCAAGATTTTTGCCTTTTAGAAATTAATGGTTTA
AATTTTTGATATTACAGCGAAAATATTGCTCATAAAAAAAAAATTTCAAG
CAAAATTTATAGGAAATTTAATTTTGTAC

protein sequence of Cotesia_vestalis006236-RA

>Cotesia_vestalis006236-PA ID=Cotesia_vestalis006236-PA|Name=Cotesia_vestalis006236-RA|organism=Cotesia vestalis|type=polypeptide|length=535bp
MLTEDNDPTKPAGVLDNTGNVSSSTESTLQHPRVNNETEVKNEVQDCPEN
ENVPGSELYVDENIDDKEQEYPDSMEKSDYSTLYGANQYYNSLYNSPSYG
SVTKNSPSLQSSYLSSYTTPSPMAQYGSYPGYNSSSSTFSPVGQNISSAS
QKLDYSAYSSTCLYGNDRMPLQYSGYYPMPGYHSTSSSFNIGNLNFTDSN
KASSLTLDSSGHDANDLTTRDTIEGKNKKKMDRTSASAKPCKRGRRQSGS
GNSIGSADTTEGGTDRIFIWDLDETIVVFHSLLTGQFATKHGKDPALLAQ
LAYRMEEMIFNLADTHFFFNDVEDCDQVHIDDVSSDDNGQDLSSYNFAAD
GFQCASANNGICLASGVRGGVDWMRKLAFRYRKIKETYSNCRNNVGGLLG
AKRESWLQLRSEIELLTDNWLTSAVKCLSLISKRSHCVNILVTTTQLVPA
LSKVLLFGLGGLFPIENIYSATKIGKESCFGRVVAKFGRRCTYVVIGDGS
DEETAARAHNFPFWRINSHSDTQALYNALEMGFL.

mRNA from alignment at scaffold_1333:18185..21966-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Cotesia_vestalis006236-RA ID=Cotesia_vestalis006236-RA|Name=Cotesia_vestalis006236-RA|organism=Cotesia vestalis|type=mRNA|length=3782bp|location=Sequence derived from alignment at scaffold_1333:18185..21966- (Cotesia vestalis)
TTTAATTTTACTATTTCTTCTTGCGTGAAGTATACTTACTTGTTAATTAA
ATAAAATAAAATGAAGGTAAAAGCTAAAACTAAAGTTTAAGCTTCTACTT
GAATATTGTACACGTTCCAAGGACCGAGGATCCGGTTTTCAGTTACTCAA
ATTACCTTTACTTCTTGGTACGTTGTTGTTTAATATTATATGTTTCATTC
TAGTACATTTTATTCTTACACTAGTCTTCGCAGTTTGCAATCTGGAATAA
GACAGCTAGTGCAGATTATTTAGAACTCGAGAGGATTTTGAAATAGAATA
TTATTTTTTTAAGTGTTTTGTATCCAGAAGATATTATATGTCTTCTCATA
TATGTGGACATGTAAATATTATTTTTATTATTAAATAATATATGTGGATG
ATTATTTTACAGGTTGGATATGTTAACCGAGGACAATGACCCAACTAAAC
CGGCAGGGGTTTTAGACAATACTGGAAATGTTTCGTCCTCGACGGAAAGT
ACGCTTCAACACCCTCGTGTTAATAATGGTTTTTATATTTATTTACACTT
AATATTTTAATTATTTTAATATTGAAAAAAAATTTTTATTTCTAAAAAAT
AAAAATACAATTTTTAAAAAATGTTTTTTAGCTTTAATTTAATGCAGAAA
AAAAAATTTTAAATGTTGGCTAACTTTATTATCTTTAAATATTATTTTTT
ATAAAAAAATTTTTGTTTAAAAATTTTATTGAATGTCTTAAAATGATATT
TAATATAATTTTTTTTTTTTTTTATAGAAACTGAAGTAAAAAATGAAGTA
CAAGACTGTCCAGAAAATGAAAATGTACCGGGCAGTGAATTGTACGTTGA
TGAAAATATAGACGATAAAGAACAGGAGTATCCTGATTCTATGGAAAAGT
CTGACTATAGTACTCTTTATGGAGCTAATCAGTATTACAACAGGTAATTT
AATTTTTAATCTAATTATAGTGAATAATAATTACTTACTAAAGTTTATAA
TTTATTTTTTACAGTTTATATAATTCTCCTTCATATGGATCAGTAACAAA
AAATTCACCGAGCCTTCAAAGCTCGTATTTAAGTTCATACACAACTCCGA
GCCCGATGGCCCAGTACGGCTCGTATCCTGGATACAACAGCAGTAGTTCA
ACATTTTCTCCAGTGGGTCAAAATATTTCTTCAGCCTCTCAGAAATTAGA
CTACAGCGCGTACAGTAGCACCTGTCTCTATGGAAATGATCGGATGCCGC
TTCAATATTCCGGGTACTATCCGATGCCGGGATATCATTCGACATCCTCG
TCATTTAATATCGGAAACCTTAATTTTACAGGTAATAATAATTATGATAA
ATTATTGAGCAATTTTATTATAAATTAATTTGTTAAAAATTTTATTTTTT
TGCTGAAGAAATAAATATTCTTCTTACAGTAATTTTCTTGTTAAAAAAAA
TTATCTAAATTTGAGAAAAATAAAATTTTAGATAAAAATTTATAAGTCGG
GAAATAAAAATTATTTTTTTAATTAATTTATCAAAAATTTTAGTTTTTAG
CTAAAAAAAATTTTATAAATAAAAAATTAATAAATTTTATATAAAAAATC
TGTCACAAAGATTCAAACAAGGCGAGTAGTCTCACCCTGGACTCATCCGG
CCACGACGCCAATGATTTAACGACCCGCGACACTATAGAAGGTAAAAATA
AGAAAAAGATGGATAGAACAAGTAAGTTTAGCTTAGTGGGACGAGAGACT
GATCCGACGAAGGGATGAAAATTTATTTCAGGCGCATCAGCGAAGCCCTG
CAAGCGCGGAAGACGTCAAAGCGGAAGCGGAAACAGTATTGGATCCGCCG
ATACTACTGAAGGCGGCACGGATCGGATATTCATCTGGGACCTTGATGAA
ACCATAGTTGTGTTCCATTCCCTGCTTACTGGACAGTTTGCGACCAAGCA
TGGCAAGGACCCGGCGTTGTTGGCTCAGCTGGCGTACAGGATGGAAGAAA
TGATATTCAATTTGGCAGACACACATTTCTTCTTCAATGACGTTGAGGTT
TTTTTTTTATTTTTACTCATTTAGCTTTTATAAACACTAGAGATTAAAGT
TAGCAGTTACTTGAATTTTTTAACAAATAAATTTGATCCAAAAAGAAAAA
TGATTAAAATTGTTAATTATCTGCTAAATTAAATAATATTTTTAAAATTT
AATGTAAAAATAAATATTAGAATTAAAAGTATTTTTTAAAAATTGAATTT
TCAATTTTTTTTAATTNNNNNNNNNNGAAAAATGATTAAAATTGTTAATT
ATCTGCTAAATTAAATAACATTTTTAAAATTTAATGTAAAAATAAATATT
AGAATTGAAAGTACTTTTTAAAAATTGAATTTTCAATTTTTTTAAATTTG
AAATTTTTTAAAAATTGAATTTTTAATTTTTTTGAATTTGAAATTTTTTT
AAAATTGAATTTTCAATTCTTGTGGATTAAAAATTTTCTAAAAATTCAAT
TTTCAATTCTTTTGAAATTGAAATTTTTAAAAAATTCAATTTTCAATTTT
TTTTAATTTAAAATTTTTTAAAAATTGAATTTTCAATTTTTTTTAATTAG
AAATTTTTTAAAAATTGAATTTTCAATTTCTTTTAATTAGAAATTTTTTA
AGAATTGAATTTTCAATTTTCTAAGTCAATTTTTATTTTCCATAATTTAT
TTCTTACAAAAATTTTTAAAATAATAAAATNNNNNNNNNNAAAAATTGAA
TTTTCAATTTTTTTTAATTAGAAATTTTTTAAGAATTGAATTTTCAATTT
TATTAAATTTCTAAAAGTCAATTTTTATTTCCCATAATTTATTTGTTACA
AAAATTTCTAAAACAATTAAAAATCTGCTAAATGAATTTTAATTTTTTAA
ATGTATCTAAAAATAAATACTAAAATCAAAATAATTTTTAGGATTGCGAT
CAAGTGCACATTGATGACGTTTCATCAGACGACAATGGTCAAGATTTATC
CTCGTACAACTTCGCAGCAGATGGATTCCAATGTGCGTCTGCAAACAATG
GAATTTGTCTGGCCTCTGGAGTCCGTGGTGGCGTAGACTGGATGCGAAAG
CTGGCCTTTCGTTACAGAAAAATAAAGGAAACCTACAGCAATTGCAGGAA
CAACGTAGGCGGTTTACTGGGAGCTAAACGGGAGTCCTGGCTGCAATTGA
GATCGGAAATTGAGCTGCTCACTGACAACTGGCTCACATCTGCTGTCAAG
TGTCTCAGTCTCATCAGCAAGCGCAGTCACTGTGTTAACATTCTTGTAAC
CACCACACAACTCGTTCCTGCGCTGTCCAAAGTGCTTCTATTTGGTCTAG
GAGGGCTTTTTCCTATTGAGAATATTTATTCAGCGACTAAAATTGGTAAA
GAGAGTTGCTTCGGACGAGTTGTAGCTAAATTTGGAAGGAGATGCACCTA
TGTAGTCATTGGTGATGGCTCTGATGAAGAAACTGCTGCTCGAGCGCACA
ATTTTCCCTTCTGGAGGATAAATAGTCACTCGGATACTCAAGCGCTCTAC
AATGCCCTTGAAATGGGCTTTCTTTAATTTTTTTTTTTTTATAAAAATAT
TTAAAGCGAAGATATATCTTCGCTACATCTCAACTTTTCGTCATTCCTAA
TTAGTTATTATTATTAAGCCCAAGATTTTTGCCTTTTAGAAATTAATGGT
TTAAATTTTTGATATTACAGCGAAAATATTGCTCATAAAAAAAAAATTTC
AAGCAAAATTTATAGGAAATTTAATTTTGTAC

Coding sequence (CDS) from alignment at scaffold_1333:18185..21966-

>Cotesia_vestalis006236-RA ID=Cotesia_vestalis006236-RA|Name=Cotesia_vestalis006236-RA|organism=Cotesia vestalis|type=CDS|length=1605bp|location=Sequence derived from alignment at scaffold_1333:18185..21966- (Cotesia vestalis)
ATGTTAACCGAGGACAATGACCCAACTAAACCGGCAGGGGTTTTAGACAA
TACTGGAAATGTTTCGTCCTCGACGGAAAGTACGCTTCAACACCCTCGTG
TTAATAATGAAACTGAAGTAAAAAATGAAGTACAAGACTGTCCAGAAAAT
GAAAATGTACCGGGCAGTGAATTGTACGTTGATGAAAATATAGACGATAA
AGAACAGGAGTATCCTGATTCTATGGAAAAGTCTGACTATAGTACTCTTT
ATGGAGCTAATCAGTATTACAACAGTTTATATAATTCTCCTTCATATGGA
TCAGTAACAAAAAATTCACCGAGCCTTCAAAGCTCGTATTTAAGTTCATA
CACAACTCCGAGCCCGATGGCCCAGTACGGCTCGTATCCTGGATACAACA
GCAGTAGTTCAACATTTTCTCCAGTGGGTCAAAATATTTCTTCAGCCTCT
CAGAAATTAGACTACAGCGCGTACAGTAGCACCTGTCTCTATGGAAATGA
TCGGATGCCGCTTCAATATTCCGGGTACTATCCGATGCCGGGATATCATT
CGACATCCTCGTCATTTAATATCGGAAACCTTAATTTTACAGATTCAAAC
AAGGCGAGTAGTCTCACCCTGGACTCATCCGGCCACGACGCCAATGATTT
AACGACCCGCGACACTATAGAAGGTAAAAATAAGAAAAAGATGGATAGAA
CAAGCGCATCAGCGAAGCCCTGCAAGCGCGGAAGACGTCAAAGCGGAAGC
GGAAACAGTATTGGATCCGCCGATACTACTGAAGGCGGCACGGATCGGAT
ATTCATCTGGGACCTTGATGAAACCATAGTTGTGTTCCATTCCCTGCTTA
CTGGACAGTTTGCGACCAAGCATGGCAAGGACCCGGCGTTGTTGGCTCAG
CTGGCGTACAGGATGGAAGAAATGATATTCAATTTGGCAGACACACATTT
CTTCTTCAATGACGTTGAGGATTGCGATCAAGTGCACATTGATGACGTTT
CATCAGACGACAATGGTCAAGATTTATCCTCGTACAACTTCGCAGCAGAT
GGATTCCAATGTGCGTCTGCAAACAATGGAATTTGTCTGGCCTCTGGAGT
CCGTGGTGGCGTAGACTGGATGCGAAAGCTGGCCTTTCGTTACAGAAAAA
TAAAGGAAACCTACAGCAATTGCAGGAACAACGTAGGCGGTTTACTGGGA
GCTAAACGGGAGTCCTGGCTGCAATTGAGATCGGAAATTGAGCTGCTCAC
TGACAACTGGCTCACATCTGCTGTCAAGTGTCTCAGTCTCATCAGCAAGC
GCAGTCACTGTGTTAACATTCTTGTAACCACCACACAACTCGTTCCTGCG
CTGTCCAAAGTGCTTCTATTTGGTCTAGGAGGGCTTTTTCCTATTGAGAA
TATTTATTCAGCGACTAAAATTGGTAAAGAGAGTTGCTTCGGACGAGTTG
TAGCTAAATTTGGAAGGAGATGCACCTATGTAGTCATTGGTGATGGCTCT
GATGAAGAAACTGCTGCTCGAGCGCACAATTTTCCCTTCTGGAGGATAAA
TAGTCACTCGGATACTCAAGCGCTCTACAATGCCCTTGAAATGGGCTTTC
TTTAA