Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| AED | 0.24 |
| QI | 527|1|1|1|0.33|0.25|4|168|110 |
| eAED | 0.24 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_vestalis002808 | Cotesia_vestalis002808 | Cotesia vestalis | gene | scaffold_721 1713..2944 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_vestalis002808-RA:exon:1417 | Cotesia_vestalis002808-RA:exon:1417 | Cotesia vestalis | exon | scaffold_721 1713..2005 + |
| Cotesia_vestalis002808-RA:exon:1418 | Cotesia_vestalis002808-RA:exon:1418 | Cotesia vestalis | exon | scaffold_721 2070..2404 + |
| Cotesia_vestalis002808-RA:exon:1419 | Cotesia_vestalis002808-RA:exon:1419 | Cotesia vestalis | exon | scaffold_721 2464..2596 + |
| Cotesia_vestalis002808-RA:exon:1420 | Cotesia_vestalis002808-RA:exon:1420 | Cotesia vestalis | exon | scaffold_721 2678..2944 + |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_vestalis002808-RA:five_prime_utr | Cotesia_vestalis002808-RA:five_prime_utr | Cotesia vestalis | five_prime_UTR | scaffold_721 1713..2005 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_vestalis002808-RA:cds | Cotesia_vestalis002808-RA:cds | Cotesia vestalis | CDS | scaffold_721 2304..2404 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_vestalis002808-RA:three_prime_utr | Cotesia_vestalis002808-RA:three_prime_utr | Cotesia vestalis | three_prime_UTR | scaffold_721 2777..2944 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >Cotesia_vestalis002808-RA ID=Cotesia_vestalis002808-RA|Name=Cotesia_vestalis002808-RA|organism=Cotesia vestalis|type=mRNA|length=1028bp|location=Sequence derived from alignment at scaffold_721:1713..2944+ (Cotesia vestalis)|Notes=Excludes all bases but those of type(s): exon.
ATTTACTTTTTATAAAGTTTCGATATTTTATTAACAGTGATTGAATATTT
ATCTATTTTTTATAGTGTCAAGAATGTACTAGTAATGATTCATCAGACTC
GGAAGACAAATGAGAATCTCCATCAAATTTCCCAAATACTAATTGATCTG
CTTAGAAGTTAATTAATTTATTATTAAAAGGCTAGATTTTTCTTGATACT
ATTAAATAATTTATTAAAAGTAATTGTTATTCATAATTTAATTTTCTTCT
TCATTTTTTTTGGAATAATGAAGAAATTAGGATATAATGTATATATTTGT
TACATGAGTAAAATGACGTGGTGTACTTTATTGAGATCTGATAAATAAAT
TGCGCTTTGTGATAAAACTTTTTTTTCTGCTTCTAATAAGAATCGAAAAA
ACGCATTTATGATTAGATAGTTTTCTACTGATAATATTATACGCATTTAA
AATGACTACGCTGTACTTTTCATTTATTCTTCACAATTTATACGGTTTTA
AAATCCAACAGTAGAAGTTAGTAAATTATGGCGGTTCATTGGTCTGAATT
GGTATTTGAACTCTCTCTATATTCATCATTGTTACTTTACGATTATTGTA
AAAAGAAGAAGAAATCGAAAGAAGAAAAAAACCAAAAATTGAATTATCAA
GAAAAAATTTGTGCTGTTTGTGGAAAGAAGATTAAGTTGAACTCGAAAAA
CCACAAACTAAATTGTGGTCATAGCTGTCACAAAGTATGTTATCAATATC
AATCTAAAAAAGAGTGTAATATTTGCAAAATCGAGTCGATTAAAGATTTT
GAAAAACTTGATTTTCAAGTAGAAGAAATTGGCTTGGAAAAAAAATTAAT
GTCGGACTAAAGTGTCATCAATTATCATCACTGCTCAATTAAAAATTATT
GTTACTAATTGAGTATATTATAAAAAAAAAAATAAAATGATTAAATATGA
AATAAAATTTCATTAAAAATATATAAAGTACTGTTAATAAATAAATTATG
GCAAAAAAATTATAAAAAATAAATTTAC back to topprotein sequence of Cotesia_vestalis002808-RA >Cotesia_vestalis002808-PA ID=Cotesia_vestalis002808-PA|Name=Cotesia_vestalis002808-RA|organism=Cotesia vestalis|type=polypeptide|length=111bp
MAVHWSELVFELSLYSSLLLYDYCKKKKKSKEEKNQKLNYQEKICAVCGK
KIKLNSKNHKLNCGHSCHKVCYQYQSKKECNICKIESIKDFEKLDFQVEE
IGLEKKLMSD. back to topmRNA from alignment at scaffold_721:1713..2944+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Cotesia_vestalis002808-RA ID=Cotesia_vestalis002808-RA|Name=Cotesia_vestalis002808-RA|organism=Cotesia vestalis|type=mRNA|length=1232bp|location=Sequence derived from alignment at scaffold_721:1713..2944+ (Cotesia vestalis)
ATTTACTTTTTATAAAGTTTCGATATTTTATTAACAGTGATTGAATATTT
ATCTATTTTTTATAGTGTCAAGAATGTACTAGTAATGATTCATCAGACTC
GGAAGACAAATGAGAATCTCCATCAAATTTCCCAAATACTAATTGATCTG
CTTAGAAGTTAATTAATTTATTATTAAAAGGCTAGATTTTTCTTGATACT
ATTAAATAATTTATTAAAAGTAATTGTTATTCATAATTTAATTTTCTTCT
TCATTTTTTTTGGAATAATGAAGAAATTAGGATATAATGTATAGTATTTG
TTACANNNNNNNNNNAATTTTTTTGAAATAATGAAGAAATTAGGATATAA
TGTATAGTATTTGTTACATGAGTAAAATGACGTGGTGTACTTTATTGAGA
TCTGATAAATAAATTGCGCTTTGTGATAAAACTTTTTTTTCTGCTTCTAA
TAAGAATCGAAAAAACGCATTTATGATTAGATAGTTTTCTACTGATAATA
TTATACGCATTTAAAATGACTACGCTGTACTTTTCATTTATTCTTCACAA
TTTATACGGTTTTAAAATCCAACAGTAGAAGTTAGTAAATTATGGCGGTT
CATTGGTCTGAATTGGTATTTGAACTCTCTCTATATTCATCATTGTTACT
TTACGATTATTGTAAAAAGAAGAAGAAATCGAAAGAAGAAAAGTAAGTAA
TTTTTTAATTATAAAGAGTACATTATTAAAAGTAATTTTTTTTTTTTCCA
GAAACCAAAAATTGAATTATCAAGAAAAAATTTGTGCTGTTTGTGGAAAG
AAGATTAAGTTGAACTCGAAAAACCACAAACTAAATTGTGGTCATAGCTG
TCACAAAGTATGTTATCAATATCAATCTAAAAAAGTAAGATAATGAGCTT
CTAAATAACATTAAAAATTTAATAGTGTATTATTATATTTTATAAAACTA
ATTATTATTTTACAGGAGTGTAATATTTGCAAAATCGAGTCGATTAAAGA
TTTTGAAAAACTTGATTTTCAAGTAGAAGAAATTGGCTTGGAAAAAAAAT
TAATGTCGGACTAAAGTGTCATCAATTATCATCACTGCTCAATTAAAAAT
TATTGTTACTAATTGAGTATATTATAAAAAAAAAAATAAAATGATTAAAT
ATGAAATAAAATTTCATTAAAAATATATAAAGTACTGTTAATAAATAAAT
TATGGCAAAAAAATTATAAAAAATAAATTTAC back to topCoding sequence (CDS) from alignment at scaffold_721:1713..2944+ >Cotesia_vestalis002808-RA ID=Cotesia_vestalis002808-RA|Name=Cotesia_vestalis002808-RA|organism=Cotesia vestalis|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_721:1713..2944+ (Cotesia vestalis)
ATGGCGGTTCATTGGTCTGAATTGGTATTTGAACTCTCTCTATATTCATC
ATTGTTACTTTACGATTATTGTAAAAAGAAGAAGAAATCGAAAGAAGAAA
AAAACCAAAAATTGAATTATCAAGAAAAAATTTGTGCTGTTTGTGGAAAG
AAGATTAAGTTGAACTCGAAAAACCACAAACTAAATTGTGGTCATAGCTG
TCACAAAGTATGTTATCAATATCAATCTAAAAAAGAGTGTAATATTTGCA
AAATCGAGTCGATTAAAGATTTTGAAAAACTTGATTTTCAAGTAGAAGAA
ATTGGCTTGGAAAAAAAATTAATGTCGGACTAA back to top
Synonyms
The feature 'Cotesia_vestalis002808-RA' has the following synonyms
| Synonym |
|---|
| maker-scaffold_721-augustus-gene-0.27-mRNA-1 |
|