Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| AED | 0.43 |
| QI | 200|0.66|0.5|1|1|1|4|0|733 |
| eAED | 0.43 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000041 | Cotesia_flavipes000041 | Cotesia flavipes | gene | scaffold_4 55311..58272 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000041-RA:exon:78 | Cotesia_flavipes000041-RA:exon:78 | Cotesia flavipes | exon | scaffold_4 55311..55622 + |
| Cotesia_flavipes000041-RA:exon:79 | Cotesia_flavipes000041-RA:exon:79 | Cotesia flavipes | exon | scaffold_4 55707..55786 + |
| Cotesia_flavipes000041-RA:exon:80 | Cotesia_flavipes000041-RA:exon:80 | Cotesia flavipes | exon | scaffold_4 56017..56556 + |
| Cotesia_flavipes000041-RA:exon:81 | Cotesia_flavipes000041-RA:exon:81 | Cotesia flavipes | exon | scaffold_4 56803..58272 + |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000041-RA:five_prime_utr | Cotesia_flavipes000041-RA:five_prime_utr | Cotesia flavipes | five_prime_UTR | scaffold_4 55311..55510 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Cotesia_flavipes000041-RA:cds | Cotesia_flavipes000041-RA:cds | Cotesia flavipes | CDS | scaffold_4 55511..55622 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >Cotesia_flavipes000041-RA ID=Cotesia_flavipes000041-RA|Name=Cotesia_flavipes000041-RA|organism=Cotesia flavipes|type=mRNA|length=2402bp|location=Sequence derived from alignment at scaffold_4:55311..58272+ (Cotesia flavipes)|Notes=Excludes all bases but those of type(s): exon.
GGAGTTTCCGACTATTCCATTTGAAGGTAAGATTTTTGGTACAGAGGGCA
GCTCTGGTGTTTAAAACTCTCCAAGATCTATTGATCATAACCTTCTTCAT
TATTATTGTCGACCATGTGTTCTCCAAGTACACACATCAGACGGTCCCTT
TAATAGTTCTTTTTTTTTTTTTTTAATTAAAAATAAAATACTAATTGAAA
ATGCAAAAATTATTTGACGACGACGATGATGTTGAGGAGACGAAGCTTCA
AATAAATAAAAATTATGCGAGGAACTACGAAAAGTGGCGTACGAAGGAAG
AAATAAATAAACTTAAAACTAAGTATGGAGATCATTTAAAGGATAGCGGA
GATGAAGATACTTCCAGTTCTGAGGACGATGAGGATGCTCATTTACTGAC
CGACGAGATAGACAAACAAATCTTCAAAACTCTTGCATATTTGAAAAAAA
AAGATCCCAAAATTTATGACGCCAACGTTGAGTTCTTTCCGCCTGCAAAA
GCCGAGGATGCTGATGAAGGTTTATTAAATCAGAATGATGAAAAAAAGAA
AAAGAAAAGTGAGAAGAATGAAAAGATGACATTGCGTGACTATGAGCGGA
AAATCTTGATGGAAAATGGAGGAATATTCAGCGATGATGAGGACAATGAA
GTAAAACCGAAAACTAAGCTGCCTTACGTAGAAGAAGAGCGTCAATTATT
GGAAAGTATAAAAAATGTCGCCAATAACATAGACGAGAATGAAGAAGACG
ATTTGTTAAAGAAAAAATCAAAGACTTCTGCTGAGAAAGAAGAAGAAGAA
GAAGCCTACAAACTCTGGCTACTGGGACAGCCAGCAGAAGTAGACGATGA
GGATAAGAAAGAATTAAAACCTCTTAGAGATTATTGGACAGATCCAAATC
TTGACGCCAATGAGAAGTTTTTGCGAGACTACAGGGCTGAGGTGAAAAAA
CGTAAAGAGCAGGAAAAATTACAAGAAGAGGAAGAGCGAAAGAGGTACAA
CGCGTTGAAACGTAAAGAAATACTCGATCGATTGACACGGCTGCGAGACG
TTACTGGGAATAAGGATATTAATATCGAAAAGTATGAAAAATTCCTTAAA
GAAGACTATGATCCAGAGGAATACGATAAGTTGATGCAGAATGATTATGG
TGAGAATTATTATAATCAAGATGTTGATGAAGATGCTAAGCCAGAGTTTC
CGGAAATCGATGAAGAGCTTGAAATAGAAAAATCTTGGGATAATTATTAT
CCTACTGAGGACAACGCTCAAAAAGACACCAGCGAACTATACTGCGAGGA
TCCTGATTTTGTGATGGACGCTGATTATGATGTTAATAAAAAGGCTGCAG
AGGAAATCACATTTAAAAGAAAAAAGAGGAAGAGGTCGAAGTTTGCAGAA
TTATTGGCGAAGAAAAAACGGGAATACAATCCTGCTGAGGATGGGTCTTT
TAAAGATTATATTGTCAAGAATTATGCATTGGAATATGAAGATAAGGTTG
GTGATAATACATTCAGGTTCAAGTATCGCCAAGTCACGCCAAATGATTAC
GGGCTAACTGTTGAAGAGATCATGATGGCTGATGACAAAGAATTGAATAA
GTGGTGTTCTCTGAAGAAAGCTCTGGAGTACAAGGATGAAAATGCCGAGC
AAAGGCTGGCTAGGATTTATAAACAAAAGAGTTTAAACGAGAATTTTAAG
AGAAAAGTTCTTCCCAGTTTGTACAAGCCTTTTGAGGAAGAAGTTGATGA
AGAAATCAAGAAAAAGCTGGGTGATGAAGAAAATGCGGATGATGAGGAGA
AAAAGAAGAAGAGGAAGAGGAAGAAAGGAAAGAAAAATAATGAAGTGAGT
GATGGTAAAAATAATCAACCTGTTGAAAGTAAAATTGTGGAGGTGAATGG
AACTGATGAGACGAATGATAAAAATACGGCGAAAGGTGAGGAAGAAGTTA
AAAATAAGAATAAGAAGAAGAAGAAGAAGAAGAAGTTAGTTGGAATTGAT
GATAAAGCTGTGGTGATTGAAAAAATGGATAAAGTTATGAATGAAAAAAA
GAAAAAGAAGAAAAAGGGAAAGGAAAGTGAGGCTGCTAAGGTGAATGAAG
AAAAGGTGGCTAGTGAAGAAATAAATGAAGCGAAGGGTAAAAAGAAGAGA
AAAGCAGACAATTTGCAAAATGGTGAGTCTGAAATCAAAGAACCGAAAGC
GAAAAAAATTAAAAATGATTCTGATGGAAATATAAATAAAATTCAGAAGA
AAGAGAAGAAAAAGAAGAAGAAGGAGAATGAGAATAAACAGAAACCAACG
ACGCCTCATAATCCAATTGCTTCATTAAGTGACGAGAGACTCAAAGCTTA
CGGTTTGAATCCACGTAAATTTAGAAATAAATTGAAGTATAATAAAATTT
AA back to topprotein sequence of Cotesia_flavipes000041-RA >Cotesia_flavipes000041-PA ID=Cotesia_flavipes000041-PA|Name=Cotesia_flavipes000041-RA|organism=Cotesia flavipes|type=polypeptide|length=734bp
MQKLFDDDDDVEETKLQINKNYARNYEKWRTKEEINKLKTKYGDHLKDSG
DEDTSSSEDDEDAHLLTDEIDKQIFKTLAYLKKKDPKIYDANVEFFPPAK
AEDADEGLLNQNDEKKKKKSEKNEKMTLRDYERKILMENGGIFSDDEDNE
VKPKTKLPYVEEERQLLESIKNVANNIDENEEDDLLKKKSKTSAEKEEEE
EAYKLWLLGQPAEVDDEDKKELKPLRDYWTDPNLDANEKFLRDYRAEVKK
RKEQEKLQEEEERKRYNALKRKEILDRLTRLRDVTGNKDINIEKYEKFLK
EDYDPEEYDKLMQNDYGENYYNQDVDEDAKPEFPEIDEELEIEKSWDNYY
PTEDNAQKDTSELYCEDPDFVMDADYDVNKKAAEEITFKRKKRKRSKFAE
LLAKKKREYNPAEDGSFKDYIVKNYALEYEDKVGDNTFRFKYRQVTPNDY
GLTVEEIMMADDKELNKWCSLKKALEYKDENAEQRLARIYKQKSLNENFK
RKVLPSLYKPFEEEVDEEIKKKLGDEENADDEEKKKKRKRKKGKKNNEVS
DGKNNQPVESKIVEVNGTDETNDKNTAKGEEEVKNKNKKKKKKKKLVGID
DKAVVIEKMDKVMNEKKKKKKKGKESEAAKVNEEKVASEEINEAKGKKKR
KADNLQNGESEIKEPKAKKIKNDSDGNINKIQKKEKKKKKKENENKQKPT
TPHNPIASLSDERLKAYGLNPRKFRNKLKYNKI. back to topmRNA from alignment at scaffold_4:55311..58272+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Cotesia_flavipes000041-RA ID=Cotesia_flavipes000041-RA|Name=Cotesia_flavipes000041-RA|organism=Cotesia flavipes|type=mRNA|length=2962bp|location=Sequence derived from alignment at scaffold_4:55311..58272+ (Cotesia flavipes)
GGAGTTTCCGACTATTCCATTTGAAGGTAAGATTTTTGGTACAGAGGGCA
GCTCTGGTGTTTAAAACTCTCCAAGATCTATTGATCATAACCTTCTTCAT
TATTATTGTCGACCATGTGTTCTCCAAGTACACACATCAGACGGTCCCTT
TAATAGTTCTTTTTTTTTTTTTTTAATTAAAAATAAAATACTAATTGAAA
ATGCAAAAATTATTTGACGACGACGATGATGTTGAGGAGACGAAGCTTCA
AATAAATAAAAATTATGCGAGGAACTACGAAAAGTGGCGTACGAAGGAAG
AAATAAATAAACGTAAGTACTCTCATTTTTTTTAAATCTTTCTAAAATAG
TAATTGAAATTTATGTTATTCATTTTTATACTTTTTTTTTTTTTAGTTAA
AACTAAGTATGGAGATCATTTAAAGGATAGCGGAGATGAAGATACTTCCA
GTTCTGAGGACGATGAGGATGCTCATGTAATTTTTTTTTATTATTATAAT
TTTTTCATATATTTTTCATACAGTGCAATTCAACAAAATTAATTACTTGA
TAAAGTAAAATTTCGCTTATTTATAGTTTACAAGTCACAGCTGTCACATA
GTGACTGCAAGATTGCTAGCTATTAATATTTACAATTAATTTTCTTTACT
ATTTTTTGTGATTCAATCAAATACTTCCTATATTTTATTAAAAAATAATT
TTACAGTTACTGACCGACGAGATAGACAAACAAATCTTCAAAACTCTTGC
ATATTTGAAAAAAAAAGATCCCAAAATTTATGACGCCAACGTTGAGTTCT
TTCCGCCTGCAAAAGCCGAGGATGCTGATGAAGGTTTATTAAATCAGAAT
GATGAAAAAAAGAAAAAGAAAAGTGAGAAGAATGAAAAGATGACATTGCG
TGACTATGAGCGGAAAATCTTGATGGAAAATGGAGGAATATTCAGCGATG
ATGAGGACAATGAAGTAAAACCGAAAACTAAGCTGCCTTACGTAGAAGAA
GAGCGTCAATTATTGGAAAGTATAAAAAATGTCGCCAATAACATAGACGA
GAATGAAGAAGACGATTTGTTAAAGAAAAAATCAAAGACTTCTGCTGAGA
AAGAAGAAGAAGAAGAAGCCTACAAACTCTGGCTACTGGGACAGCCAGCA
GAAGTAGACGATGAGGATAAGAAAGAATTAAAACCTCTTAGAGATTATTG
GACAGATCCAAATCTTGACGCCAATGAGAAGTTTTTGCGAGACTACGTTA
TGGGGAATAAATTTTCTGAGCTAGATGACGAAGCTGATGATAGTGATGAG
GAAGATGGTTACGCCAATCGTTTGCATGACGATCAGGATTTGTCTGAAGA
CGAAAAGCAGATTGAGAACCAGGAGGAGTTTGAGCACAAGTATAATTTCA
GATTCGAAGAACCTGATCCAGAGTTTATTAAACGGTATCCCAGGACAATA
AGTGACTCTATGAGGAAAAAAGACACCCGGAGAGCGGAGAAGAGGGCTGA
GGTGAAAAAACGTAAAGAGCAGGAAAAATTACAAGAAGAGGAAGAGCGAA
AGAGGTACAACGCGTTGAAACGTAAAGAAATACTCGATCGATTGACACGG
CTGCGAGACGTTACTGGGAATAAGGATATTAATATCGAAAAGTATGAAAA
ATTCCTTAAAGAAGACTATGATCCAGAGGAATACGATAAGTTGATGCAGA
ATGATTATGGTGAGAATTATTATAATCAAGATGTTGATGAAGATGCTAAG
CCAGAGTTTCCGGAAATCGATGAAGAGCTTGAAATAGAAAAATCTTGGGA
TAATTATTATCCTACTGAGGACAACGCTCAAAAAGACACCAGCGAACTAT
ACTGCGAGGATCCTGATTTTGTGATGGACGCTGATTATGATGTTAATAAA
AAGGCTGCAGAGGAAATCACATTTAAAAGAAAAAAGAGGAAGAGGTCGAA
GTTTGCAGAATTATTGGCGAAGAAAAAACGGGAATACAATCCTGCTGAGG
ATGGGTCTTTTAAAGATTATATTGTCAAGAATTATGCATTGGAATATGAA
GATAAGGTTGGTGATAATACATTCAGGTTCAAGTATCGCCAAGTCACGCC
AAATGATTACGGGCTAACTGTTGAAGAGATCATGATGGCTGATGACAAAG
AATTGAATAAGTGGTGTTCTCTGAAGAAAGCTCTGGAGTACAAGGATGAA
AATGCCGAGCAAAGGCTGGCTAGGATTTATAAACAAAAGAGTTTAAACGA
GAATTTTAAGAGAAAAGTTCTTCCCAGTTTGTACAAGCCTTTTGAGGAAG
AAGTTGATGAAGAAATCAAGAAAAAGCTGGGTGATGAAGAAAATGCGGAT
GATGAGGAGAAAAAGAAGAAGAGGAAGAGGAAGAAAGGAAAGAAAAATAA
TGAAGTGAGTGATGGTAAAAATAATCAACCTGTTGAAAGTAAAATTGTGG
AGGTGAATGGAACTGATGAGACGAATGATAAAAATACGGCGAAAGGTGAG
GAAGAAGTTAAAAATAAGAATAAGAAGAAGAAGAAGAAGAAGAAGTTAGT
TGGAATTGATGATAAAGCTGTGGTGATTGAAAAAATGGATAAAGTTATGA
ATGAAAAAAAGAAAAAGAAGAAAAAGGGAAAGGAAAGTGAGGCTGCTAAG
GTGAATGAAGAAAAGGTGGCTAGTGAAGAAATAAATGAAGCGAAGGGTAA
AAAGAAGAGAAAAGCAGACAATTTGCAAAATGGTGAGTCTGAAATCAAAG
AACCGAAAGCGAAAAAAATTAAAAATGATTCTGATGGAAATATAAATAAA
ATTCAGAAGAAAGAGAAGAAAAAGAAGAAGAAGGAGAATGAGAATAAACA
GAAACCAACGACGCCTCATAATCCAATTGCTTCATTAAGTGACGAGAGAC
TCAAAGCTTACGGTTTGAATCCACGTAAATTTAGAAATAAATTGAAGTAT
AATAAAATTTAA back to topCoding sequence (CDS) from alignment at scaffold_4:55311..58272+ >Cotesia_flavipes000041-RA ID=Cotesia_flavipes000041-RA|Name=Cotesia_flavipes000041-RA|organism=Cotesia flavipes|type=CDS|length=2202bp|location=Sequence derived from alignment at scaffold_4:55311..58272+ (Cotesia flavipes)
ATGCAAAAATTATTTGACGACGACGATGATGTTGAGGAGACGAAGCTTCA
AATAAATAAAAATTATGCGAGGAACTACGAAAAGTGGCGTACGAAGGAAG
AAATAAATAAACTTAAAACTAAGTATGGAGATCATTTAAAGGATAGCGGA
GATGAAGATACTTCCAGTTCTGAGGACGATGAGGATGCTCATTTACTGAC
CGACGAGATAGACAAACAAATCTTCAAAACTCTTGCATATTTGAAAAAAA
AAGATCCCAAAATTTATGACGCCAACGTTGAGTTCTTTCCGCCTGCAAAA
GCCGAGGATGCTGATGAAGGTTTATTAAATCAGAATGATGAAAAAAAGAA
AAAGAAAAGTGAGAAGAATGAAAAGATGACATTGCGTGACTATGAGCGGA
AAATCTTGATGGAAAATGGAGGAATATTCAGCGATGATGAGGACAATGAA
GTAAAACCGAAAACTAAGCTGCCTTACGTAGAAGAAGAGCGTCAATTATT
GGAAAGTATAAAAAATGTCGCCAATAACATAGACGAGAATGAAGAAGACG
ATTTGTTAAAGAAAAAATCAAAGACTTCTGCTGAGAAAGAAGAAGAAGAA
GAAGCCTACAAACTCTGGCTACTGGGACAGCCAGCAGAAGTAGACGATGA
GGATAAGAAAGAATTAAAACCTCTTAGAGATTATTGGACAGATCCAAATC
TTGACGCCAATGAGAAGTTTTTGCGAGACTACAGGGCTGAGGTGAAAAAA
CGTAAAGAGCAGGAAAAATTACAAGAAGAGGAAGAGCGAAAGAGGTACAA
CGCGTTGAAACGTAAAGAAATACTCGATCGATTGACACGGCTGCGAGACG
TTACTGGGAATAAGGATATTAATATCGAAAAGTATGAAAAATTCCTTAAA
GAAGACTATGATCCAGAGGAATACGATAAGTTGATGCAGAATGATTATGG
TGAGAATTATTATAATCAAGATGTTGATGAAGATGCTAAGCCAGAGTTTC
CGGAAATCGATGAAGAGCTTGAAATAGAAAAATCTTGGGATAATTATTAT
CCTACTGAGGACAACGCTCAAAAAGACACCAGCGAACTATACTGCGAGGA
TCCTGATTTTGTGATGGACGCTGATTATGATGTTAATAAAAAGGCTGCAG
AGGAAATCACATTTAAAAGAAAAAAGAGGAAGAGGTCGAAGTTTGCAGAA
TTATTGGCGAAGAAAAAACGGGAATACAATCCTGCTGAGGATGGGTCTTT
TAAAGATTATATTGTCAAGAATTATGCATTGGAATATGAAGATAAGGTTG
GTGATAATACATTCAGGTTCAAGTATCGCCAAGTCACGCCAAATGATTAC
GGGCTAACTGTTGAAGAGATCATGATGGCTGATGACAAAGAATTGAATAA
GTGGTGTTCTCTGAAGAAAGCTCTGGAGTACAAGGATGAAAATGCCGAGC
AAAGGCTGGCTAGGATTTATAAACAAAAGAGTTTAAACGAGAATTTTAAG
AGAAAAGTTCTTCCCAGTTTGTACAAGCCTTTTGAGGAAGAAGTTGATGA
AGAAATCAAGAAAAAGCTGGGTGATGAAGAAAATGCGGATGATGAGGAGA
AAAAGAAGAAGAGGAAGAGGAAGAAAGGAAAGAAAAATAATGAAGTGAGT
GATGGTAAAAATAATCAACCTGTTGAAAGTAAAATTGTGGAGGTGAATGG
AACTGATGAGACGAATGATAAAAATACGGCGAAAGGTGAGGAAGAAGTTA
AAAATAAGAATAAGAAGAAGAAGAAGAAGAAGAAGTTAGTTGGAATTGAT
GATAAAGCTGTGGTGATTGAAAAAATGGATAAAGTTATGAATGAAAAAAA
GAAAAAGAAGAAAAAGGGAAAGGAAAGTGAGGCTGCTAAGGTGAATGAAG
AAAAGGTGGCTAGTGAAGAAATAAATGAAGCGAAGGGTAAAAAGAAGAGA
AAAGCAGACAATTTGCAAAATGGTGAGTCTGAAATCAAAGAACCGAAAGC
GAAAAAAATTAAAAATGATTCTGATGGAAATATAAATAAAATTCAGAAGA
AAGAGAAGAAAAAGAAGAAGAAGGAGAATGAGAATAAACAGAAACCAACG
ACGCCTCATAATCCAATTGCTTCATTAAGTGACGAGAGACTCAAAGCTTA
CGGTTTGAATCCACGTAAATTTAGAAATAAATTGAAGTATAATAAAATTT
AA back to top
Synonyms
The feature 'Cotesia_flavipes000041-RA' has the following synonyms
| Synonym |
|---|
| maker-scaffold_4-augustus-gene-0.102-mRNA-1 |
|