DV3004275-RA (mRNA) Daktulosphaira vitifoliae

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold25	contig	scaffold25:400725..403865 - View in Apollo

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
DV3004275	DV3004275	Daktulosphaira vitifoliae	gene	scaffold25 400725..403865 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3004275-RA	DV3004275-PA	Daktulosphaira vitifoliae	polypeptide	scaffold25 400725..403865 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3004275-RA-CDS	DV3004275-RA-CDS-10	Daktulosphaira vitifoliae	CDS	scaffold25 400725..400751 -
DV3004275-RA-CDS	DV3004275-RA-CDS-9	Daktulosphaira vitifoliae	CDS	scaffold25 400803..400930 -
DV3004275-RA-CDS	DV3004275-RA-CDS-8	Daktulosphaira vitifoliae	CDS	scaffold25 401589..401601 -
DV3004275-RA-CDS	DV3004275-RA-CDS-7	Daktulosphaira vitifoliae	CDS	scaffold25 401634..401678 -
DV3004275-RA-CDS	DV3004275-RA-CDS-6	Daktulosphaira vitifoliae	CDS	scaffold25 402217..402440 -
DV3004275-RA-CDS	DV3004275-RA-CDS-5	Daktulosphaira vitifoliae	CDS	scaffold25 402714..402783 -
DV3004275-RA-CDS	DV3004275-RA-CDS-4	Daktulosphaira vitifoliae	CDS	scaffold25 403077..403093 -
DV3004275-RA-CDS	DV3004275-RA-CDS-3	Daktulosphaira vitifoliae	CDS	scaffold25 403379..403459 -
DV3004275-RA-CDS	DV3004275-RA-CDS-2	Daktulosphaira vitifoliae	CDS	scaffold25 403622..403628 -
DV3004275-RA-CDS	DV3004275-RA-CDS-1	Daktulosphaira vitifoliae	CDS	scaffold25 403830..403865 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3004275-RA-exon	DV3004275-RA-exon-10	Daktulosphaira vitifoliae	exon	scaffold25 400725..400751 -
DV3004275-RA-exon	DV3004275-RA-exon-9	Daktulosphaira vitifoliae	exon	scaffold25 400803..400930 -
DV3004275-RA-exon	DV3004275-RA-exon-8	Daktulosphaira vitifoliae	exon	scaffold25 401589..401601 -
DV3004275-RA-exon	DV3004275-RA-exon-7	Daktulosphaira vitifoliae	exon	scaffold25 401634..401678 -
DV3004275-RA-exon	DV3004275-RA-exon-6	Daktulosphaira vitifoliae	exon	scaffold25 402217..402440 -
DV3004275-RA-exon	DV3004275-RA-exon-5	Daktulosphaira vitifoliae	exon	scaffold25 402714..402783 -
DV3004275-RA-exon	DV3004275-RA-exon-4	Daktulosphaira vitifoliae	exon	scaffold25 403077..403093 -
DV3004275-RA-exon	DV3004275-RA-exon-3	Daktulosphaira vitifoliae	exon	scaffold25 403379..403459 -
DV3004275-RA-exon	DV3004275-RA-exon-2	Daktulosphaira vitifoliae	exon	scaffold25 403622..403628 -
DV3004275-RA-exon	DV3004275-RA-exon-1	Daktulosphaira vitifoliae	exon	scaffold25 403830..403865 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold25:400725..403865-
coding sequence from alignment at scaffold25:400725..403865-

spliced messenger RNA

>DV3004275-RA ID=DV3004275-RA|Name=DV3004275-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=648bp|location=Sequence derived from alignment at scaffold25:400725..403865- (Daktulosphaira vitifoliae)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTTAGAACTTATATTCCATATTCTATTCAATGTATTAGAACGTCT
AGTGTGTCCAAATGGCTGCGGACGGTCCTATAATTACAGAAAAGGTTTAA
GCCATCAGTCCCGTTATGAATATGTTTGGTTAGTTGGTTTATTTCTGTGG
AGTTTTTTTACATCTATGGAAAATTTTTATACAAGCCATATTGCTTACTG
CATATTTTTACGTTATCTCAAAAGAATAGTTGATTCTTTATTTACATGCC
CAAACCAGAACTGTTATAAAAGTTATAAGACTAAAGGTAATCTCATGCGT
CATCTTAAATATGAATGTGGCAAATCACCTAAATATGCGTGTCCATATTG
TAACAAGAAGAGTTCATTGAAATTCAACTTAAAGAAACATATAGCTGTGA
TTCATAATACTGTGGCTAATCCGCTAATACTAAATAATGTTTCAAGTATC
ATTATTATTACAATAAAAATTTTATACCAAACGACTTTATTCCGTAGATT
AATATGTCCAAATGGTTGTGGACGTTCATACAAGTACAAACAAGGTTTAA
ATCAACACACCTATTATGAATGTGGGAAGACACCTATGTATGCTTGCCCA
TATTGCAATAAAAAAAGCTATTCTCCAATTTTAAATTTAGAAATGTAG

protein sequence of DV3004275-RA

>DV3004275-PA ID=DV3004275-PA|Name=DV3004275-RA|organism=Daktulosphaira vitifoliae|type=polypeptide|length=216bp
MLLELIFHILFNVLERLVCPNGCGRSYNYRKGLSHQSRYEYVWLVGLFLW
SFFTSMENFYTSHIAYCIFLRYLKRIVDSLFTCPNQNCYKSYKTKGNLMR
HLKYECGKSPKYACPYCNKKSSLKFNLKKHIAVIHNTVANPLILNNVSSI
IIITIKILYQTTLFRRLICPNGCGRSYKYKQGLNQHTYYECGKTPMYACP
YCNKKSYSPILNLEM.

mRNA from alignment at scaffold25:400725..403865-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>DV3004275-RA ID=DV3004275-RA|Name=DV3004275-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=3141bp|location=Sequence derived from alignment at scaffold25:400725..403865- (Daktulosphaira vitifoliae)
ATGCTTTTAGAACTTATATTCCATATTCTATTCAATGTAAATAATAGACT
GGATTAGAGTTCTTACACTATTTTTATATTTTGTCCATATTGCTATGATA
GCTACCATATATTAGTGTAAAAAACTATAGACATTTTTATAAAAATACTA
AATTTTCCAATTTGAAAGCTTAAAATTTAGGTAAAAATCAATTTTTTGTT
TATTTTCACATCTTAAATCACAGATATTTTAATATAGGTATTAGGTATTA
AGACTTCCAATATAAAACAAAATTATTTTTAAAAAAAAGTAGTATAATGT
TATATATTTTTTATTTCAAAAAGTTTTTTTACGTTACAATTTATTCAATT
AAAAATAAATAAATTCTTTATGATATTATTAATTTGTCTTATCTTTTTAT
TTTTAGAACGTCTAGTGTGTCCAAATGGCTGCGGACGGTCCTATAATTAC
AGAAAAGGTTTAAGCCATCAGTCCCGTTATGAATATGGTAATTCGTCCAT
ATGAGGACAAGCCCTCAATAACAAAAGAAAAGCTCTGTGAAATCAAACTT
AAAAAATACATATTTTAGTTCATAATTGTATAAACACAGATCCTATATTT
ATTTCTAATTTGTAATTTTTTAAAATCTGTACTGAAATTGATAATCTGAC
CTAATTCGAGTAATGTTGCATAATAATTGAACTGTAATTAAAAATAAAGT
AATCGTCAGAATTTTAAAATTATAGTAATCCATGGTACGAAGCTAAATGG
CTAAAATGAGTTTATAATTTAGTTTGGTTAGTTGGTTTAGTTAGTTAGTT
TTATATCTTAAACCATAGATATTATTTTAATATTGAACAAGTTATAATAA
GACTTCCAAAATTAAAAAATGAATTTTTATAGGAAATCTTATAATTTATT
CAATATTAACTAATTTTTAATAAAATGGTACTTGATTTGTTTTTTCATAA
ATTTTGTTTTAATGTTATTCAAATTATTCTCAATATAATGTTTAACACAA
GATATAAAAATAAACAAAAAATTGATTTTTATCTAATCTTTAAACTAACA
AATTGAGTTTTTTTTTTTTTTTTTTTATCAAGTTTCTGTGGAGTTTTTTT
ACATCTATGGAAAATTTTTATACAAGCCATATTGCTTACTGCATATTTTT
ACGTATATAACCTGATAAATGTTAATAACATATGGACTTAGAAATAAATA
TCTTAGTGATTTCCTATATTATGTTTTAAGAAATTAACTAACATCTTAAA
TTTGTTAATAATTTGGAAAAGAGATTAGAAATTCTATGTTTTTTACTAAA
TAGTTATTCTTTAGTACTCTAGTTGATTGTATATTTTTTTTAAAACTTAA
AAAATGCATCTTTTTATTTGAAGTAGTGGCTTGTTTAGCTGTGTACTACA
AACATTTTTTTTTTTAAATTTTCAGGTTATCTCAAAAGAATAGTTGATTC
TTTATTTACATGCCCAAACCAGAACTGTTATAAAAGTTATAAGACTAAAG
GTAATCTCATGCGTCATCTTAAATATGAATGTGGCAAATCACCTAAATAT
GCGTGTCCATATTGTAACAAGAAGAGTTCATTGAAATTCAACTTAAAGAA
ACATATAGCTGTGATTCATAATACTGTGGCTAATCCGCTAATACTAAATG
TATAATTAAGATATGTGTGATGTTTTACTTATTTTACCAGTTTGTTTTTA
TAAAGTTATCTACTAAAATGAAAACGTATTATTATATTACTTTTATATTA
AAATAATAGATTGTATGGAGCAAAATTAAACTTTTCTACTTAATATATTA
AATTTCTATCGGTGAAATCTATATTTTACTGTAAATGATTTAAATTATAA
TTTATACAATTTTGGATTTGGACTCAACACCTCGATTAGAATGTGAAATA
CGATAAGAACTTTATAGGATTGTCTGGCTACTCCAATATAACCATTAAGT
TAAACAATAGTTTTTTTAATTAAGAAATTGAGTTTCTAACGATATTGATA
GGCTAAAATATATAGAACTTCAGAAACTTGATTAGCCCTTTCATCGGGAT
CCAGACTATAATGGTTAATAAAAATTTTGCCATGAACATGAAGTAACAGA
TTAATAAATGGTACATTTTATCAAAAAATAAAATATTCAAGGTCTAATTT
TTAATTTAAAATTATATTTTATTTTCTTTATATGAAGAATGTTTCAAGTA
TCATTATTATTACAATAAAAATTTTATACCAAGTATAAACATACAAAAAA
ATTATTTTTTGAAGACGACTTTATTCCGTATTTTGTGGCGAATAAGGTCC
ATTTGCAATTGTTCATAATGATTGCCAACTAAGAGTTACAGCTAATTGAG
TTTCTTTTCTATTATATAATACATAACGAAATATGATTTGATTTAAGACA
ACTCGAATCTGAACAGAGCCGTAGTAATTATTTCTGGTGCTCTAACCAAA
CTAGATTATATATGCCTTTTCAAAAAAATCTTGCAATTTGTCGAGATTTT
TCCTTTACATGATATTAAAAAAGTAACAAAAAGGTCTTCCATTTTTTTTA
TATATAATGATTACGAAGACATTTTAATTACATACCTCATTGTCATTTTA
TGTTCATAAATAATATTTTAAAATTTCAAAATAAATTAAATTTATCCAAC
ACCACAAGAATCACCTAAAAAAAAATCTAAGACCAAACAAATTCCGATGC
TGATGATCTAAATATAGTTTTAGAAATACCCCCATATCCAAATTTTTTCA
GGTACTTTTTATGATGTTGGGTTAATTTTATTTATTCTTAATTAATTAGT
CTTTAAAAATCAATTATACTTTTTTCGGGTTTAACTTAATTAATTTTTTT
TTGTCTTTAAAGCTTGTTCACTAATTTTTTTAAAATAAATTATAGTTTTT
TATTTTTTCAGAATTTATTTTCTTATTTTATTTAGGTAGATTAATATGTC
CAAATGGTTGTGGACGTTCATACAAGTACAAACAAGGTTTAAATCAACAC
ACCTATTATGAATGTGGGAAGACACCTATGTATGCTTGCCCATATTGCAA
TAAAAAAAGCTATGTTAAATCGAATCTTAAAAAGCATATTATATTAATTC
ATAAATGCATTAAGTCTCCAATTTTAAATTTAGAAATGTAG

Coding sequence (CDS) from alignment at scaffold25:400725..403865-

>DV3004275-RA ID=DV3004275-RA|Name=DV3004275-RA|organism=Daktulosphaira vitifoliae|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold25:400725..403865- (Daktulosphaira vitifoliae)
ATGCTTTTAGAACTTATATTCCATATTCTATTCAATGTATTAGAACGTCT
AGTGTGTCCAAATGGCTGCGGACGGTCCTATAATTACAGAAAAGGTTTAA
GCCATCAGTCCCGTTATGAATATGTTTGGTTAGTTGGTTTATTTCTGTGG
AGTTTTTTTACATCTATGGAAAATTTTTATACAAGCCATATTGCTTACTG
CATATTTTTACGTTATCTCAAAAGAATAGTTGATTCTTTATTTACATGCC
CAAACCAGAACTGTTATAAAAGTTATAAGACTAAAGGTAATCTCATGCGT
CATCTTAAATATGAATGTGGCAAATCACCTAAATATGCGTGTCCATATTG
TAACAAGAAGAGTTCATTGAAATTCAACTTAAAGAAACATATAGCTGTGA
TTCATAATACTGTGGCTAATCCGCTAATACTAAATAATGTTTCAAGTATC
ATTATTATTACAATAAAAATTTTATACCAAACGACTTTATTCCGTAGATT
AATATGTCCAAATGGTTGTGGACGTTCATACAAGTACAAACAAGGTTTAA
ATCAACACACCTATTATGAATGTGGGAAGACACCTATGTATGCTTGCCCA
TATTGCAATAAAAAAAGCTATTCTCCAATTTTAAATTTAGAAATGTAG