Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| AED | 0.50 |
| QI | 0|-1|0|1|-1|1|1|0|452 |
| eAED | 0.51 |
| Full name | DV3016295 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| DV3016295-RA-exon | DV3016295-RA-exon-1 | Daktulosphaira vitifoliae | exon | scaffold572 112896..114254 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| DV3016295-RA-CDS | DV3016295-RA-CDS-1 | Daktulosphaira vitifoliae | CDS | scaffold572 112896..114254 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >DV3016295-RA ID=DV3016295-RA|Name=DV3016295-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=1359bp|location=Sequence derived from alignment at scaffold572:112896..114254+ (Daktulosphaira vitifoliae)|Notes=Excludes all bases but those of type(s): exon.
ATGAGTAATTCTAGTAGTAGAAGTAGTAGTCCTATCGACGACAAATCAGT
TTATCCTGATTTCAAACCAACCTGTAGTACTAAAGTATCTGTTTCAAAAC
ATCCTTCTCGTAATTTACGTTCAGCTTCGTCGTCTAATCCTCCTATAGAA
AATTTATTAACTAAAGGCGATGCTCTTCTTGAATCTTCTTCTGAACTTTT
AAATACAACTTTTGGTAAACTAGGTGACACCGACAGTTTTTTAGGTCAGT
GTAGTCAAACCTTGTTAAAATTAGAGCAAGTCCAAAATCCAATTTCTGAT
TTTAATCCAATTATTCCTATCAAACAGAAATCTATCGTACAGTCTCCAGA
ATTTCAGTCTTTATTTATCGAACCGAACCTCAATCAACCTCTTCCCCTAC
CTCGTGAAATGGCCAACAATCAGATAAGTCTAGAGGCTGCCCTACGTCTA
TTACCACAGTCGTTTGATGGTACCAGTTCAGAGGATCTTGAAATATTTTT
AGAAAAATGTGAGTTTGCCATAGAGTGCGCAGACTCAACAGCACAGGAAA
AGCTTCTTAAAGGTATTCAAGTACGTCTATCCGGCAAAGCTAGACAAGCA
ATCAAATTCAAAGAAATCCAATCGTGGACTGACTTAAAAAATACTCTAAA
ATCCACTTTAGAACCACAGAGGACAACTACTCATCTCTATCTAGAGCTAT
ATTGTACCAAACAGGCTCCTAATGAAGATGTTATTTCTTATGCCAATCGT
GTAGAATGTCTACAATCACAAATTTTAGAACAAGAAACAAATGGAAAAAG
CACTGAAGCAGCTACCGCCCTTGAGCAAAGCCTTAAAGCTCAAACAGTCC
AAGTGTTCACCGAAGGTTTAAATAATCTTAAAGACTTTATAAAAGCTCGC
AATCCACCAACATTAGAGAAGGCTATTCAAGCCGCCCGTGAAGAAGAGCG
TGTCCGAAAATCATGGCACGAATCTAGGAAGTTGACCCCTACAACAGGAG
GAAAGTCAAAAGTTATGTGTTTTAATTGTACAAAAATTGGTCATTTAGCA
AAAGACTGCAGGTCTACTTCAAATCACACGCATAAATCATCAAATTTTAT
TAAGCCTAAATCTAATTTGCAAAGCTATCGTCCTAACTTGGCTCACGTTC
AAATGGTTGTGTGTCGTTATTGTAAAAAATCAGGACACACTTTAGAAGTA
TGCAGAAAACGCCAATGGGTTAACAACAAGAAACAATCACAATCAACACC
AGAACCACAGACATCTAATGCGGGAAACGAGACACGACAGGCAACTTTCG
GCGGAAAACCTGTCAGCAGCATCAAATTAGCCGATCTCTCCATTTTACCG
CAAAATTAG back to topprotein sequence of DV3016295-RA >DV3016295-PA ID=DV3016295-PA|Name=DV3016295-RA|organism=Daktulosphaira vitifoliae|type=polypeptide|length=453bp
MSNSSSRSSSPIDDKSVYPDFKPTCSTKVSVSKHPSRNLRSASSSNPPIE
NLLTKGDALLESSSELLNTTFGKLGDTDSFLGQCSQTLLKLEQVQNPISD
FNPIIPIKQKSIVQSPEFQSLFIEPNLNQPLPLPREMANNQISLEAALRL
LPQSFDGTSSEDLEIFLEKCEFAIECADSTAQEKLLKGIQVRLSGKARQA
IKFKEIQSWTDLKNTLKSTLEPQRTTTHLYLELYCTKQAPNEDVISYANR
VECLQSQILEQETNGKSTEAATALEQSLKAQTVQVFTEGLNNLKDFIKAR
NPPTLEKAIQAAREEERVRKSWHESRKLTPTTGGKSKVMCFNCTKIGHLA
KDCRSTSNHTHKSSNFIKPKSNLQSYRPNLAHVQMVVCRYCKKSGHTLEV
CRKRQWVNNKKQSQSTPEPQTSNAGNETRQATFGGKPVSSIKLADLSILP
QN. back to topmRNA from alignment at scaffold572:112896..114254+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >DV3016295-RA ID=DV3016295-RA|Name=DV3016295-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=1359bp|location=Sequence derived from alignment at scaffold572:112896..114254+ (Daktulosphaira vitifoliae)
ATGAGTAATTCTAGTAGTAGAAGTAGTAGTCCTATCGACGACAAATCAGT
TTATCCTGATTTCAAACCAACCTGTAGTACTAAAGTATCTGTTTCAAAAC
ATCCTTCTCGTAATTTACGTTCAGCTTCGTCGTCTAATCCTCCTATAGAA
AATTTATTAACTAAAGGCGATGCTCTTCTTGAATCTTCTTCTGAACTTTT
AAATACAACTTTTGGTAAACTAGGTGACACCGACAGTTTTTTAGGTCAGT
GTAGTCAAACCTTGTTAAAATTAGAGCAAGTCCAAAATCCAATTTCTGAT
TTTAATCCAATTATTCCTATCAAACAGAAATCTATCGTACAGTCTCCAGA
ATTTCAGTCTTTATTTATCGAACCGAACCTCAATCAACCTCTTCCCCTAC
CTCGTGAAATGGCCAACAATCAGATAAGTCTAGAGGCTGCCCTACGTCTA
TTACCACAGTCGTTTGATGGTACCAGTTCAGAGGATCTTGAAATATTTTT
AGAAAAATGTGAGTTTGCCATAGAGTGCGCAGACTCAACAGCACAGGAAA
AGCTTCTTAAAGGTATTCAAGTACGTCTATCCGGCAAAGCTAGACAAGCA
ATCAAATTCAAAGAAATCCAATCGTGGACTGACTTAAAAAATACTCTAAA
ATCCACTTTAGAACCACAGAGGACAACTACTCATCTCTATCTAGAGCTAT
ATTGTACCAAACAGGCTCCTAATGAAGATGTTATTTCTTATGCCAATCGT
GTAGAATGTCTACAATCACAAATTTTAGAACAAGAAACAAATGGAAAAAG
CACTGAAGCAGCTACCGCCCTTGAGCAAAGCCTTAAAGCTCAAACAGTCC
AAGTGTTCACCGAAGGTTTAAATAATCTTAAAGACTTTATAAAAGCTCGC
AATCCACCAACATTAGAGAAGGCTATTCAAGCCGCCCGTGAAGAAGAGCG
TGTCCGAAAATCATGGCACGAATCTAGGAAGTTGACCCCTACAACAGGAG
GAAAGTCAAAAGTTATGTGTTTTAATTGTACAAAAATTGGTCATTTAGCA
AAAGACTGCAGGTCTACTTCAAATCACACGCATAAATCATCAAATTTTAT
TAAGCCTAAATCTAATTTGCAAAGCTATCGTCCTAACTTGGCTCACGTTC
AAATGGTTGTGTGTCGTTATTGTAAAAAATCAGGACACACTTTAGAAGTA
TGCAGAAAACGCCAATGGGTTAACAACAAGAAACAATCACAATCAACACC
AGAACCACAGACATCTAATGCGGGAAACGAGACACGACAGGCAACTTTCG
GCGGAAAACCTGTCAGCAGCATCAAATTAGCCGATCTCTCCATTTTACCG
CAAAATTAG back to topCoding sequence (CDS) from alignment at scaffold572:112896..114254+ >DV3016295-RA ID=DV3016295-RA|Name=DV3016295-RA|organism=Daktulosphaira vitifoliae|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold572:112896..114254+ (Daktulosphaira vitifoliae)
ATGAGTAATTCTAGTAGTAGAAGTAGTAGTCCTATCGACGACAAATCAGT
TTATCCTGATTTCAAACCAACCTGTAGTACTAAAGTATCTGTTTCAAAAC
ATCCTTCTCGTAATTTACGTTCAGCTTCGTCGTCTAATCCTCCTATAGAA
AATTTATTAACTAAAGGCGATGCTCTTCTTGAATCTTCTTCTGAACTTTT
AAATACAACTTTTGGTAAACTAGGTGACACCGACAGTTTTTTAGGTCAGT
GTAGTCAAACCTTGTTAAAATTAGAGCAAGTCCAAAATCCAATTTCTGAT
TTTAATCCAATTATTCCTATCAAACAGAAATCTATCGTACAGTCTCCAGA
ATTTCAGTCTTTATTTATCGAACCGAACCTCAATCAACCTCTTCCCCTAC
CTCGTGAAATGGCCAACAATCAGATAAGTCTAGAGGCTGCCCTACGTCTA
TTACCACAGTCGTTTGATGGTACCAGTTCAGAGGATCTTGAAATATTTTT
AGAAAAATGTGAGTTTGCCATAGAGTGCGCAGACTCAACAGCACAGGAAA
AGCTTCTTAAAGGTATTCAAGTACGTCTATCCGGCAAAGCTAGACAAGCA
ATCAAATTCAAAGAAATCCAATCGTGGACTGACTTAAAAAATACTCTAAA
ATCCACTTTAGAACCACAGAGGACAACTACTCATCTCTATCTAGAGCTAT
ATTGTACCAAACAGGCTCCTAATGAAGATGTTATTTCTTATGCCAATCGT
GTAGAATGTCTACAATCACAAATTTTAGAACAAGAAACAAATGGAAAAAG
CACTGAAGCAGCTACCGCCCTTGAGCAAAGCCTTAAAGCTCAAACAGTCC
AAGTGTTCACCGAAGGTTTAAATAATCTTAAAGACTTTATAAAAGCTCGC
AATCCACCAACATTAGAGAAGGCTATTCAAGCCGCCCGTGAAGAAGAGCG
TGTCCGAAAATCATGGCACGAATCTAGGAAGTTGACCCCTACAACAGGAG
GAAAGTCAAAAGTTATGTGTTTTAATTGTACAAAAATTGGTCATTTAGCA
AAAGACTGCAGGTCTACTTCAAATCACACGCATAAATCATCAAATTTTAT
TAAGCCTAAATCTAATTTGCAAAGCTATCGTCCTAACTTGGCTCACGTTC
AAATGGTTGTGTGTCGTTATTGTAAAAAATCAGGACACACTTTAGAAGTA
TGCAGAAAACGCCAATGGGTTAACAACAAGAAACAATCACAATCAACACC
AGAACCACAGACATCTAATGCGGGAAACGAGACACGACAGGCAACTTTCG
GCGGAAAACCTGTCAGCAGCATCAAATTAGCCGATCTCTCCATTTTACCG
CAAAATTAG back to top
Synonyms
The feature 'DV3016295-RA' has the following synonyms
| Synonym |
|---|
| augustus_masked-scaffold572-processed-gene-0.10-mRNA-1 |
|