DV3016633-RA (mRNA) Daktulosphaira vitifoliae

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold584	contig	scaffold584:74728..78371 + View in Apollo

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
DV3016633	DV3016633	Daktulosphaira vitifoliae	gene	scaffold584 74728..78371 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3016633-RA	DV3016633-PA	Daktulosphaira vitifoliae	polypeptide	scaffold584 74728..78371 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3016633-RA-exon	DV3016633-RA-exon-1	Daktulosphaira vitifoliae	exon	scaffold584 74728..74746 +
DV3016633-RA-exon	DV3016633-RA-exon-2	Daktulosphaira vitifoliae	exon	scaffold584 75541..75557 +
DV3016633-RA-exon	DV3016633-RA-exon-3	Daktulosphaira vitifoliae	exon	scaffold584 76340..76418 +
DV3016633-RA-exon	DV3016633-RA-exon-4	Daktulosphaira vitifoliae	exon	scaffold584 76654..76814 +
DV3016633-RA-exon	DV3016633-RA-exon-5	Daktulosphaira vitifoliae	exon	scaffold584 77393..77421 +
DV3016633-RA-exon	DV3016633-RA-exon-6	Daktulosphaira vitifoliae	exon	scaffold584 77437..77453 +
DV3016633-RA-exon	DV3016633-RA-exon-7	Daktulosphaira vitifoliae	exon	scaffold584 78149..78159 +
DV3016633-RA-exon	DV3016633-RA-exon-8	Daktulosphaira vitifoliae	exon	scaffold584 78267..78371 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3016633-RA-CDS	DV3016633-RA-CDS-1	Daktulosphaira vitifoliae	CDS	scaffold584 74728..74746 +
DV3016633-RA-CDS	DV3016633-RA-CDS-2	Daktulosphaira vitifoliae	CDS	scaffold584 75541..75557 +
DV3016633-RA-CDS	DV3016633-RA-CDS-3	Daktulosphaira vitifoliae	CDS	scaffold584 76340..76418 +
DV3016633-RA-CDS	DV3016633-RA-CDS-4	Daktulosphaira vitifoliae	CDS	scaffold584 76654..76814 +
DV3016633-RA-CDS	DV3016633-RA-CDS-5	Daktulosphaira vitifoliae	CDS	scaffold584 77393..77421 +
DV3016633-RA-CDS	DV3016633-RA-CDS-6	Daktulosphaira vitifoliae	CDS	scaffold584 77437..77453 +
DV3016633-RA-CDS	DV3016633-RA-CDS-7	Daktulosphaira vitifoliae	CDS	scaffold584 78149..78159 +
DV3016633-RA-CDS	DV3016633-RA-CDS-8	Daktulosphaira vitifoliae	CDS	scaffold584 78267..78371 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold584:74728..78371+
coding sequence from alignment at scaffold584:74728..78371+

spliced messenger RNA

>DV3016633-RA ID=DV3016633-RA|Name=DV3016633-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=438bp|location=Sequence derived from alignment at scaffold584:74728..78371+ (Daktulosphaira vitifoliae)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAAATATACCTATAAATTTTATTTTGAGGAGTTTTTTATGACATC
TTTGTTACAGTCACGGAGTTTATTGTCAATTATCACTAGCAATTGGTATA
ATTTCTATATTGCCAGAATAGAGTTGCTAGCGTATGGTGAGCGGGGTGGG
GTGAATGCGTTTCGACAGTCTAGTCTCAAGACCATAGACGACTGGATACG
CAAGAATAATAATACGTGTCGCGTGGAAGGTTACAAACTTACAACAAACA
AACATACATGTGAAATTAATATAAGTTTACACATTATTCTTGAATTATTA
ACTATTTCATCCCTTATGCCTGTAATTGAGTGGTCTCAAGCATTATCACT
TTTACCCGAGTTAAGAGTCGTCGAACCTTTAGACCTACTGTTGCGCCATG
ACACTCCTAAATTAACGGTTGGCGTCAATAGCTTATAA

protein sequence of DV3016633-RA

>DV3016633-PA ID=DV3016633-PA|Name=DV3016633-RA|organism=Daktulosphaira vitifoliae|type=polypeptide|length=146bp
MNKYTYKFYFEEFFMTSLLQSRSLLSIITSNWYNFYIARIELLAYGERGG
VNAFRQSSLKTIDDWIRKNNNTCRVEGYKLTTNKHTCEINISLHIILELL
TISSLMPVIEWSQALSLLPELRVVEPLDLLLRHDTPKLTVGVNSL.

mRNA from alignment at scaffold584:74728..78371+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>DV3016633-RA ID=DV3016633-RA|Name=DV3016633-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=3644bp|location=Sequence derived from alignment at scaffold584:74728..78371+ (Daktulosphaira vitifoliae)
ATGAATAAATATACCTATAGTAAATAATTATTAATTTAATTTTGCTTTTT
TTATTTGTTGGTGTTTATTTATAATTATTATATTAAACTATAATTTAGGA
ATAATAATAACAATAATATATTAATAATGCATTATTAATAAGTGCTTTAA
ATAAAAGACAAGTTGTTATTTTTATTATTTAATAATTATTACCTATATTT
TAAAAAAACCGATAACAAATTTAAAAATAAAAACATAAGATAAGGTAGCA
ATAGCCTGCTTGACCATCATAATTAAAACACCTAATTCCACACCTAATTG
ATTTTTCATAAATTCACAACTAGTGAGAGAATCAGAACTCAGTAGTTTAG
CCAGTTCAGGACAAAACTTTGTTCTAATCGTCACATACTTCCCAAAAATG
TGACAGATAAGGTGTTGCCATGAGTAGCGATTGAACGAGTTGAAAATAAG
AAGACTCGAAGTCAACAATTTAATAATAATTCGACTATAATTTATGCTAA
ATAAAAACTTAAAAATAGTATTCTCTCGTTTCATCGTTTCATGGACATCA
TTCGAAATAACTTTTATTCGATTATATACATTTCAAGATCAAGAAATCAT
TGTTTTTATAATAAACGAGAAATCATTAGAAATAATCACTCGATTATAGA
ATAATCAATATTATTTAAAAAATCAGAATATCTCGATTATATAATAGATA
TGATTTCAATAATCGAAATATCTCGATTATGAAAATAATCGAGATATCTC
GATTATATATCTCGATTATGCCCATCACTAATTTTAATAAAAATAATATT
TTAAAATATTTAGAATTTTATTTTGAGGAGGTATTATAGACAAATTAGTC
GTAAAAGAAACGAAATATAAATTAAGTTAAAATCAAGTAAACGTAAAGTC
TAATTATCTGCGTTAAATTAAAAAATATAATTTAACTTTAACTTATAAAC
TCGTTTATGCCTAGCCATGTATTTTAATTTAGCATAATAATCTTCAATAT
CATAGTATTTAAGTTATAAAATAAAAGCTTTATCACATTTTAAATACAAT
CTCAATAAAAAATTGAGTTTTTACTTTCCAAATTTATACACAATAAGTTT
CACTTTAAGTTAATATAAATTCATAGTGAATTTCTTATATTGAATACTGA
ACTTTTATTTGCACTAAGCCATTCATATAGTTGTTTTTTCTTACTAAACA
TTTTAATGTTTTAAAATATAAATAAACAGCTCGACCCCGGACACTACACC
ACTGTACTCTTTAAATTTATTATTAACCCCTTTTCGAAAAATTTTAATTA
TTTTAGCCTAATCGTGCATTGATAGCCCTTAAAATCCTTTATAACTATCA
TAAATGAATTATTTATATAATGTTTATAAAACGGGCGCAAAATTGTAAAA
TGAATAATTTTTGTTAAAAATATAGTTTAATAAAACTGAAAAACACGCTT
TTAAAGAATATCGAACTAAAAAGTTAAAAATAAGCTTAAAACAATAATAC
TAGTATTTTTCGTTCATTATTGTTTTAAGCTTATTTTTAACTTTTTAGTT
CGATATTCTTTAAAAGCGTGTTTTTCAGTATTTTAAAACTATATTTATTT
TTCACTTTTTAGTTTTTTATGACATCTTTGTTACAGTCACGGAGTTTATT
GTCAATTATCACTAGCAATTGGTATAATTTCTATATTGCCAGTTAGTGTG
TTTATAAACTCACGACTATGTGTCTTACCATTGATAATAAAGGCTATATG
CTTGCTAATATCGTCATAAAAAACCAATTAGCTACCTGTATTTGTAATCC
TTTATGTATTATACATGTATATTAACTCAAAAAAATTTGAATCTTTAAAT
GTTAAAATAATATATATATAATATTGATGATAAGCACGCATGTACGGGTA
TGAAAGCGAAAATTAAAATTATACAGGAATAGAGTTGCTAGCGTATGGTG
AGCGGGGTGGGGTGAATGCGTTTCGACAGTCTAGTCTCAAGACCATAGAC
GACTGGATACGCAAGAATAATAATACGTGTCGCGTGGAAGGTTACAAACT
TACAACAAACAAACATACATGTGAAATTAATATAAGTGTGTTAAAAATTA
TGTTATCTGTTATGATTTGCATATAACTTTAATGTCATTTAGATTTATTG
ATACTTGGATTTTTTGGTCGAAAATTGTATTTAGTTTACTACTTATAATA
ATATTTTTGTACTTACAAAACTTTGTTGAACTTAATATCTATTGATCGAT
ACGGATGTCGAAGGAACAATTCGGTGAAATGCCGGGCTGTAAAATATATT
AGCTAGGCATATAATTAATAGAAAATATTATCGTTATCGCATTGCCGTCT
CAAAGCTCATCTATAAATATAATGTAAGTTACTTTTTCTGAGTATTTTAA
GTCAATNAGAAGTTTCTTTTTCTGAGTATTTTAAGTCAATTGAATGCGGA
AAAGTGTTAGCTTATGATCTCGGTATTAAAGCAAATTTTTCTGATTAACA
AAAGAGGAAATATAGATGAAATTGCTGAAGATTTTTAATTTTTGTACGGT
AGTAGCTTGTTGGTTAATTCATTGGACTATACAGGGTGATTTTTTTTATC
ATAACCCACTCAATTACTTACAGAATAATAATAATTAAAAATTTTTTTTT
TATTATTATCTTTAGTTACACATTATTCTTGAATTATTAACTATGTAATA
CTTTTTAAGTTCATCCCTTATGCCTGGTAAGGGTGTCAACTTTGTTTTTT
TAAATGGTAACACATATTTTGAATTTAATAAAATGTTTGAGTTTTTAATT
TAATAACAAATGTCATTTGAATTTTTAATATAACTTTATTCGTTTATTAG
ATATAAACATTTAAAGTTTCAATTTTTTGAGTTAATATACATGTATAATA
CACTAGGGATTAAAATTACAGGTAGCTAATTGGTTTTTTATGACATCGAT
ATTAGCAGGTACAAAGCATTGTTATTATCAATGGTAGTAAGGCACATTGT
TGTGAGTTTATAAATACACTAACTGACAATACAGAAAGTATATCTATTGA
TAGTCATAATTGATAATAAACAATCCGTGACTGTGATAGCAATATCATAA
AAAATCAATTAGCTACCTGTATTTGTAATCCCTTGTGTATTATACCTATA
TATTAACTCAAAAAATTGAAACTTTAAATGTTTATATCTAATAAACGAAT
AAAGTTATATTAAAAATTCAAATGACATTTGTTATTAAATTAAAAACTCA
AACATTTTATTAAATTCAAAATATGTGTTACCATTTAAAAAAACAAAGTT
GACACCCTTACCAGGCATAAGGGATGAACTTAAAAAGTATTACATAGTTA
ATAATTCAAGAATAATGTGTAACTAAAGATAATAATAAAAAAAAATTTTT
TAATTATTATTATTCTGTAAGTAATTGAGTGGGTTATGATAAAAAAAATC
ACCCTGTATACAAAAATATGCAATTAAGCAACCATTAAGTATAAAATCTA
AATGCTTCCGATTTTAGTTTTGAAATAAAACATTTTAAGTCTCAAGCATT
ATCACTTTTACCCGAGTTAAGAGTCGTCGAACCTTTAGACCTACTGTTGC
GCCATGACACTCCTAAATTAACGGTTGGCGTCAATAGCTTATAA

Coding sequence (CDS) from alignment at scaffold584:74728..78371+

>DV3016633-RA ID=DV3016633-RA|Name=DV3016633-RA|organism=Daktulosphaira vitifoliae|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold584:74728..78371+ (Daktulosphaira vitifoliae)
ATGAATAAATATACCTATAAATTTTATTTTGAGGAGTTTTTTATGACATC
TTTGTTACAGTCACGGAGTTTATTGTCAATTATCACTAGCAATTGGTATA
ATTTCTATATTGCCAGAATAGAGTTGCTAGCGTATGGTGAGCGGGGTGGG
GTGAATGCGTTTCGACAGTCTAGTCTCAAGACCATAGACGACTGGATACG
CAAGAATAATAATACGTGTCGCGTGGAAGGTTACAAACTTACAACAAACA
AACATACATGTGAAATTAATATAAGTTTACACATTATTCTTGAATTATTA
ACTATTTCATCCCTTATGCCTGTAATTGAGTGGTCTCAAGCATTATCACT
TTTACCCGAGTTAAGAGTCGTCGAACCTTTAGACCTACTGTTGCGCCATG
ACACTCCTAAATTAACGGTTGGCGTCAATAGCTTATAA