DV3001944-RA (mRNA) Daktulosphaira vitifoliae

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold120	contig	scaffold120:11893..14187 - View in Apollo

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
DV3001944	DV3001944	Daktulosphaira vitifoliae	gene	scaffold120 11893..14187 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3001944-RA	DV3001944-PA	Daktulosphaira vitifoliae	polypeptide	scaffold120 11893..14187 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3001944-RA-CDS	DV3001944-RA-CDS-10	Daktulosphaira vitifoliae	CDS	scaffold120 11893..12039 -
DV3001944-RA-CDS	DV3001944-RA-CDS-9	Daktulosphaira vitifoliae	CDS	scaffold120 12104..12223 -
DV3001944-RA-CDS	DV3001944-RA-CDS-8	Daktulosphaira vitifoliae	CDS	scaffold120 12284..12478 -
DV3001944-RA-CDS	DV3001944-RA-CDS-7	Daktulosphaira vitifoliae	CDS	scaffold120 12497..12524 -
DV3001944-RA-CDS	DV3001944-RA-CDS-6	Daktulosphaira vitifoliae	CDS	scaffold120 12649..12665 -
DV3001944-RA-CDS	DV3001944-RA-CDS-5	Daktulosphaira vitifoliae	CDS	scaffold120 12795..12803 -
DV3001944-RA-CDS	DV3001944-RA-CDS-4	Daktulosphaira vitifoliae	CDS	scaffold120 13032..13152 -
DV3001944-RA-CDS	DV3001944-RA-CDS-3	Daktulosphaira vitifoliae	CDS	scaffold120 13231..13297 -
DV3001944-RA-CDS	DV3001944-RA-CDS-2	Daktulosphaira vitifoliae	CDS	scaffold120 14009..14143 -
DV3001944-RA-CDS	DV3001944-RA-CDS-1	Daktulosphaira vitifoliae	CDS	scaffold120 14172..14187 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3001944-RA-exon	DV3001944-RA-exon-10	Daktulosphaira vitifoliae	exon	scaffold120 11893..12039 -
DV3001944-RA-exon	DV3001944-RA-exon-9	Daktulosphaira vitifoliae	exon	scaffold120 12104..12223 -
DV3001944-RA-exon	DV3001944-RA-exon-8	Daktulosphaira vitifoliae	exon	scaffold120 12284..12478 -
DV3001944-RA-exon	DV3001944-RA-exon-7	Daktulosphaira vitifoliae	exon	scaffold120 12497..12524 -
DV3001944-RA-exon	DV3001944-RA-exon-6	Daktulosphaira vitifoliae	exon	scaffold120 12649..12665 -
DV3001944-RA-exon	DV3001944-RA-exon-5	Daktulosphaira vitifoliae	exon	scaffold120 12795..12803 -
DV3001944-RA-exon	DV3001944-RA-exon-4	Daktulosphaira vitifoliae	exon	scaffold120 13032..13152 -
DV3001944-RA-exon	DV3001944-RA-exon-3	Daktulosphaira vitifoliae	exon	scaffold120 13231..13297 -
DV3001944-RA-exon	DV3001944-RA-exon-2	Daktulosphaira vitifoliae	exon	scaffold120 14009..14143 -
DV3001944-RA-exon	DV3001944-RA-exon-1	Daktulosphaira vitifoliae	exon	scaffold120 14172..14187 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold120:11893..14187-
coding sequence from alignment at scaffold120:11893..14187-

spliced messenger RNA

>DV3001944-RA ID=DV3001944-RA|Name=DV3001944-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=855bp|location=Sequence derived from alignment at scaffold120:11893..14187- (Daktulosphaira vitifoliae)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATAATCCAAATAATCCAACATCAGGAATAATCAAATTAAGTCATAT
GTTTAACACTTTGTCATTAAAAAATTTACCAAGATCGCTCGATTTAATTC
ATATTTGTATTGCTAACTCAAACTTAAATCCAACAATTGAAATTAAAAAA
GTACCAGTTTCGAGACTGCAGTCGAAGAACGCGAAATTTAAAGCGCAGAA
AACGAAAAATTCTTCCAGATTAATCAAGGGAAACTCAAAAACTATAAACG
ATAGCCCATTGAAATGTGTTATAAAAATTATGAACAGTCTAATCGAAAAA
GAAAATTCATCAAAATGTATGGTTGTAGTGATGTCTAAATTATACATTTC
TGTTTATTTATTACAAAATTCAATATTAATGAAAATAAATATTTTTGCAA
AATACAAACTCCGTGTAAGACGACGAGATCCACTTGAAGATCATGATACT
AATTCACAGGACAGTGGTTCTCTTACTGCTCATTCAGATGATTCTAGATC
AGTGTCAACATTATCTCAGAGCAATACATCATATACAGCTGATTCAGATG
ATGAATTCTTAGACATTGCTGTATCCCCAACAGAATCGTCTCCAGATTCA
CTTCTACTTGGATTCAGTACATTAATAGAAGGAGATATGATTAGCCAGTC
ATCAATTATTGTTAAAAGAAAAATTCCAAAATATTCTTCAGATACTCCTC
GCAAGACTGATTTATTGTTTGGTGATAATAAAAATAATGAAGCAGTTACG
AGAAAAAGAAAGTTGACACGTGATTTAGAATCAAATCCTGAAATTAATGT
ATTAATAAAGAAAACTAGACCTAGTACGAAATCTAAACCGGCCGAGAGAA
GTTAA

protein sequence of DV3001944-RA

>DV3001944-PA ID=DV3001944-PA|Name=DV3001944-RA|organism=Daktulosphaira vitifoliae|type=polypeptide|length=285bp
MHNPNNPTSGIIKLSHMFNTLSLKNLPRSLDLIHICIANSNLNPTIEIKK
VPVSRLQSKNAKFKAQKTKNSSRLIKGNSKTINDSPLKCVIKIMNSLIEK
ENSSKCMVVVMSKLYISVYLLQNSILMKINIFAKYKLRVRRRDPLEDHDT
NSQDSGSLTAHSDDSRSVSTLSQSNTSYTADSDDEFLDIAVSPTESSPDS
LLLGFSTLIEGDMISQSSIIVKRKIPKYSSDTPRKTDLLFGDNKNNEAVT
RKRKLTRDLESNPEINVLIKKTRPSTKSKPAERS.

mRNA from alignment at scaffold120:11893..14187-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>DV3001944-RA ID=DV3001944-RA|Name=DV3001944-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=2295bp|location=Sequence derived from alignment at scaffold120:11893..14187- (Daktulosphaira vitifoliae)
ATGCATAATCCAAATAGTACATGTTTATTAATAGGGAATAATAGATCCAA
CATCAGGAATAATCAAATTAAGTCATATGTTTAACACTTTGTCATTAAAA
AATTTACCAAGATCGCTCGATTTAATTCATATTTGTATTGCTAACTCAAA
CTTAAATCCAACAATTGAAATTAAAAAAGGTAAGACAATTAAATAACTTT
TAAATCCTTATATATTTAAAATAATTAAAAAAAACGTTGATTGTTAAAAT
GGTAAAACAAGCTTTTTTTTTTGTAATTTACTACAATATTAATAAAGTTA
ATAAATTTTTACAAGAAAAAGAAGTAAAAAATAATCTTAATACTCATTTC
AAAGCCATTTTCAAGGGCTTTTTTAATACAAATATTAAAATCTTTGTAAC
ATTATTGTATTTGTATTTGTATTGAGTTCCTACTTAGGATGAGACACGGG
GACGTGTTGGAGTGGACTGTACACTTAACTTTTACGAATAACTACAATAA
TATAATTTAAGTTCTAGAATTTACAGTTATTATTAAATGAATAATATTAT
AATAATCATTCACAATTTTATATTTATGTGACACTTTATACAACATCAGG
TCAAACATTATTGAAAATTGCTTACCCAGACTATTAGTTGTACACTTACT
AATTAACTAACTAAATCGTACTAACATTAATACTACAGTAATACGGGTTG
GGTTAATTATTCATAAATTATTGTTGTTTTCAAATTAAAATTTAATACTG
ATCATTATATGTGTTTATATTCTATTTCAATATATTACTTAATGAATATT
TACAATATTAAAAATTAAAAAAAAATTAGGGTGCTGAAAAATCCTCATCG
AGGTCGCAAAAGATGTGAAACAATAATTTCTATTGAACAGTACCAGTTTC
GAGACTGCAGTCGAAGAACGCGAAATTTAAAGCGCAGAAAACGAAAAATT
CTTCCAGGTGACTCATATTTTGAGGGGTTTACGAAAATAGGATGTAGAGG
GAGTTAGAGAGAGACAAATTATTTTTTATTTATAGATTAATCAAGGGAAA
CTCAAAAACTATAAACGATAGCCCATTGAAATGTGTTATAAAAATTATGA
ACAGTCTAATCGAAAAAGAAAATTCATCAAAATGTATGGTTGTAGTGATG
TCTAAAGTAAGATATACAATAAACGCATGTAACTATTTAAATTTAACCTT
GGCTAATATATCAATAACAATTAAATTGTATAGATATTTTTATTATTAAT
ACCTTAAATAAACAAATATTTATTTAAACTAAATCATAAAATAATTTTTT
AAATCCTTAAAAATATATTATTTTATGTAAACACAAAACTTAAAAAGATA
TTTTAAATAATATAATTATACAAATTTGTATTAGTTATACATTGTATATT
ATTTGTACAATAATTATGTCAAGCAAGATTCCATACTGTTGTGCATTCTT
AAACTGTGAAGTTTGTATTAATAATATATTAACATTAATTAATCCCAGCA
TAAATTAAATCATTAACTTTAGTCTGTTTATTTATTACAGTAAATTTAAT
TAAATTTTTTATTCATCTCTAAACTGTTAATTATGTAATGTTAAATAGCT
ATAGTTAAAAAGAACGATCAATGTTAGATATCCAATTTACTATTAAATTT
AATAATTTTCTAGAAATTCAATATTAATGAAAATAAATATTGTAATTTAT
GGTTTTTAGTTTGCAAAATACAAACTCCGTGTAAGACGACGAGATCCACT
TGAAGATCATGATACTAATTCACAGGACAGTGGTTCTCTTACTGCTCATT
CAGATGATTCTAGATCAGTGTCAACATTATCTCAGAGCAATACATCATAT
ACAGCTGATTCAGATGATGAATTCTTAGACATTGCTGTATCCCCAACAGA
ATCGGTAATTATTTTACCTTTTAAAAAGGTTAACAGTTTTTTCCTAATTT
TATTTTATTTCTAGTCTCCAGATTCACTTCTACTTGGATTCAGTACATTA
ATAGAAGGAGATATGATTAGCCAGTCATCAATTATTGTTAAAAGAAAAAT
TCCAAAATATTCTTCAGATACTCCTCGCAAGACTGTAATTATTATAAAAC
AATTTATTATTGCAATAATCATAGATTTAATACGTGTATAACTTATAGGA
TTTATTGTTTGGTGATAATAAAAATAATGAAGCAGTTACGAGAAAAAGAA
AGTTGACACGTGATTTAGAATCAAATCCTGAAATTAATGTATTAATAAAG
AAAACTAGACCTAGTACGAAATCTAAACCGGCCGAGAGAAGTTAA

Coding sequence (CDS) from alignment at scaffold120:11893..14187-

>DV3001944-RA ID=DV3001944-RA|Name=DV3001944-RA|organism=Daktulosphaira vitifoliae|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold120:11893..14187- (Daktulosphaira vitifoliae)
ATGCATAATCCAAATAATCCAACATCAGGAATAATCAAATTAAGTCATAT
GTTTAACACTTTGTCATTAAAAAATTTACCAAGATCGCTCGATTTAATTC
ATATTTGTATTGCTAACTCAAACTTAAATCCAACAATTGAAATTAAAAAA
GTACCAGTTTCGAGACTGCAGTCGAAGAACGCGAAATTTAAAGCGCAGAA
AACGAAAAATTCTTCCAGATTAATCAAGGGAAACTCAAAAACTATAAACG
ATAGCCCATTGAAATGTGTTATAAAAATTATGAACAGTCTAATCGAAAAA
GAAAATTCATCAAAATGTATGGTTGTAGTGATGTCTAAATTATACATTTC
TGTTTATTTATTACAAAATTCAATATTAATGAAAATAAATATTTTTGCAA
AATACAAACTCCGTGTAAGACGACGAGATCCACTTGAAGATCATGATACT
AATTCACAGGACAGTGGTTCTCTTACTGCTCATTCAGATGATTCTAGATC
AGTGTCAACATTATCTCAGAGCAATACATCATATACAGCTGATTCAGATG
ATGAATTCTTAGACATTGCTGTATCCCCAACAGAATCGTCTCCAGATTCA
CTTCTACTTGGATTCAGTACATTAATAGAAGGAGATATGATTAGCCAGTC
ATCAATTATTGTTAAAAGAAAAATTCCAAAATATTCTTCAGATACTCCTC
GCAAGACTGATTTATTGTTTGGTGATAATAAAAATAATGAAGCAGTTACG
AGAAAAAGAAAGTTGACACGTGATTTAGAATCAAATCCTGAAATTAATGT
ATTAATAAAGAAAACTAGACCTAGTACGAAATCTAAACCGGCCGAGAGAA
GTTAA