DV3020608-RA (mRNA) Daktulosphaira vitifoliae

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold1527	contig	scaffold1527:4088..11614 - View in Apollo

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold1527:4088..11614-
coding sequence from alignment at scaffold1527:4088..11614-

spliced messenger RNA

>DV3020608-RA ID=DV3020608-RA|Name=DV3020608-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=207bp|location=Sequence derived from alignment at scaffold1527:4088..11614- (Daktulosphaira vitifoliae)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGAGGAAACAAGACAAAGTAATGGCCATGAAATCCAGAAAAATAA
TGGTGAAAATAGTGCATTTGCGGCGAAAAAATTGTTTAGAACGCAAAAAC
AAAAATATTCAAAATTTGGAAATCAACAAAATAATGATAGAAAACCAGGA
ATTTGCAATTTTTGTAAGAAACCAGGTCATTGGAAACTTCGATGTGCTTT
AAAAGCG

protein sequence of DV3020608-RA

>DV3020608-PA ID=DV3020608-PA|Name=DV3020608-RA|organism=Daktulosphaira vitifoliae|type=polypeptide|length=69bp
MVEETRQSNGHEIQKNNGENSAFAAKKLFRTQKQKYSKFGNQQNNDRKPG
ICNFCKKPGHWKLRCALKA

mRNA from alignment at scaffold1527:4088..11614-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>DV3020608-RA ID=DV3020608-RA|Name=DV3020608-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=7527bp|location=Sequence derived from alignment at scaffold1527:4088..11614- (Daktulosphaira vitifoliae)
ATGGTAGAGGAAACAAGACAAAGTAATGGCCATGAAATCCAGAAAAATAA
TGGTGAAAATAGTGCATTTGCGGCGAAAAAATTGTTTAGAACGCAAAAAC
AAAAATATTCAAAATTTGGAAATCAACAAAATAATGATAGAAAACCAGGA
ATTTGCAATTTTTGTAAGAAACCAGGTCATTGGAAACGTGATTGCTGGAT
TTTGAAGAAAGAACAAGACGAAAGGAATAAAAACGAATCGAATTCTGGTA
ATGCACTAATAGGCGTTAATTCAATGGTGAACAAAATTAGTGATTTTGAT
AAATGGTATGTGGACTCCGGTGCAAGTGATCACATGACCATTAGAAGAGA
GTGGTTCAGAACTTATGAGTCGTTCAAGATTCAGTTGCCAGTACGTATTG
GTGATGGTAAATATATTATGGCTATTGGTAAAGGTAATATATATGTTCAA
GCAAAAATTGGCGAAAAATGGGTTGACAGTTATTTGTCAAATGTTTTACA
TGTACCTGAACTCAAAGTAAATTTGTTTTCATGTGGAGCGTGCCTTGATA
AAGGTATAATAATGATAACAGACAAAAATGTTTGTACATTTAAAAGAGGA
AATAGTACAGTTGCTGTTGGAATTCGTGAGAATAAATTGTTTTCGATGAT
TTTTAAAACAAGGATTTCGCAAGAGATAGATCAAGTGAATATTGCTGAAA
AAATTCTTACATTACAACAGTGGCATGAAAAACTAGGTCATCAGAATGTT
CAATATGTTAGAAATTACCTAAGGCATATGGGTATTCAATTCACAGATAT
GGAAAACAAATTTTTCTGTGAAGCTTGCATTTATGGTAAACAACACAGAG
AACCATTTACACTGAGCAGTACCAAAACAACAAAACCAGGTCAGATAATT
CACAGTGATGTTTGTGGACCCATGGAAGAAAATTCTCTTGGTGGTAAAAG
ATACTTTGTTATATTCAAAGATGATTACTCTAAGTATACATATGTATATT
TTATGAAACAAAAATCAGAAGTAAAAGAGAAGTTTGAATTATTCTTAAAT
ACAGTGAAAAATCAGTTAAATATATCAGTTCTTACTTTACGAAGTGATTG
TGGTTTGGAATATAAGAATGATGAAGTCAAAGCTATTTTGAATAAATTTG
GTATAAAACATGAGACCAGTGTACCATATACACCACAGCAAAATGGTAAA
GCGGAACGAACAATGCGTATAATAGTAGAAGCAGCTAAAACTATGTTATA
CAGTAAAATTTGTCAAAAAATCTTTGGGCTGAAGCGGTAAATACAGCTGT
ATATGTATTGAATCGTACGTTAAATTCAGATAACAAAGAAAAAACGCCCT
ATGAATTATGGTATAATAAAAGTCCCAATATAAGCAATTTTAAAGTATTT
GGTAGTGAAGTTTATGTTCATATACCAAAAGAAAAACGTAGAAAATGGGA
TCAAAAAGGGAGAAAAGGAATATTTGTTGGGTATTCAGAAGAAACTAAAG
GATACCGCATATGCTTTGATGGAAAAGAAGTTTCATTAAGCAGAGATGTT
ATATTCAAAGAATCTATGGAAATAGAAATCAAAATTAGAAAAGAAGATGA
AGAAATAAATTCAGAAATGGTGGATGAAAGTGAAGAAAATAACATTAATG
ATGAGAATAATGTTGAAAGAAAACAAAATATGGATGAACTTGATCAATCA
GCAGATCAGACTCATGAGCAATTAAAAATGAGACTTAGAGATAGACAAAA
TATAGAAAAACCAGTAAGGTATAGAACAGAAACATTTTATTCAATGTGTG
ATAATCCAGTTACATATGAAGAAGCTATGACACAAGAAAATTCAGAAGAT
TGGAAAGAAGCAATGGATGAAGAAATGTTGTCATTAAAAAATAATGAAAC
CTANTCATTAAAAAAGAATGAAACCTGGAAATTAGTAAATATACCAACAA
ATAAAAAAGTACTTAACAATGGCTGGGTATATCGAACCAAACTCAAGAAA
AATGGAGAAGTCGATAGATTTAAAGCCAGACTAGTTATAAAAGGCTATGC
ACAAGTGCATGGAATTGATTTTCAAGAAACTTTTAGTCCAGTTGTAAAGT
ATGACTCTATACGAGTACTGCTAGCAATAGCAGCAGCCAGAAAATTAAAA
CTCAGACAATTTGATATTAAAACAGCCTTTTTATATGGTGATCTTGAAGA
AGAGATTTACATGAACCAGCCAAAAGGTTATGAAGATGGAACTAAACAAG
TTTGCAAACTTCAACGAAGCTTGTATGGATTAAAACAAGCACCCAGGTGC
TGGAATACAAAATTTAAAAATTTGTTGTTAAAATTTGATCTAAAAGAAAC
AAAGGCAGATCCCTGTGTATTTGTAAGTAATAAAAATGAACAATTAATGA
TTGTAGCTATTTTTGTAGATGATGGGATTATAGCAGCAACAAATGATGAG
CAGGTGGACATGATGGTGAAGTACCTGATGAGCAACTTTGAGACAAAATC
AGGTGAACTTAATCATTTTCTGGGAATTGAAATTGATCAGAGATCAGATG
GGTCAATATTTATACATCAGTCATTATACTGTCAACGCATTTTGGAGAGA
TTCAATATGGATGAATCCAATGTCCTATGCATTCCTGCAGATCCACAACA
CTCATTAGATGCAAATTTATCTGAATCATTACAAGCAGGGGAAGTTCCAT
ACAGAGAAGCAGTAGGAAGTTTGTTATATCTAAGTCAGATCACAAGGCCT
GATATAACATTTGCTGTAAATCTTGTCAGTCGCTATTTAGAAAAGCCTCT
GATAATACATTGGAATGCGGTGAAACGTATTTTAAAATATTTAAAAGGAA
CCTATAACTATGGTTTATTTTTTCATTCTAGGGTGAAACTTAAGTTACAT
GGTTATAGTGATGCAGACTATCCTGATGATACAACAACTAGGCGATCAAC
ATCAGGATACGTTTTCATGATGACTAATGGAATAGTAGCATGGTGTTCAC
AAAGGCAAAAATCAGTAGCACTCTCAACTACTGAGGCTGAATACATGGCA
CTGAGTCAAGCAGTCCAGGAATTAACTTGGTTGACGCTACTAACAAGTGA
TCTTCTGGAAACACAGGGAGAGACACCTGTTTTGTACGCGGACAATCAAA
GTGCCATAAAATTGGTGAAGAATCCAAAATTCCATAAACTAAACATATAG
ATGTTCGTTATCATTATATTCGTGAGAAGTTCAATGAAGGGATGTTTTCA
CTGGAGTATGTGAGCAGCAAAGAGCAGTTAGCTGACATCTTGACCAAGCC
AACACCACGAACAAGATTTCAAGAACTCAGAGAAATGTTAGGAATTAGAT
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TGACTGACCATTATCATCCGCGTGCATACGGCTTACGTAAATATTCCTAC
CGCCGTTTATACCACAGGTATAACGTTAGTCCGACCCTCCCGCCCACAAA
ACACGACTGTACCTAACGCATGATACGTTTACGTACTTAAGTCGCTTTAC
ATGTATATATATATATATATATATATATATTCAAATTATTATTAAAAATA
TATATTAACACACTTTAATCTTATTTAAAAATATATAACTCATTCATTCC
GATTACAAAGGATGAATCCAGTATCGTCATTTTTCGTCACTACCTTCATG
TTCCGGGAGTGAGTAATTTACGCGTATGCTGCTTTCCTTGGATGTGGGAG
CCGTTTCTCAGAATCCCTCCCCGGAATCGAACCCTGATTTCCCGTTACCC
GTTACAACCATGATATTGATAGCACTACTATCATAACATAAAACTAAAAA
GTAAAAAATAAATAGTTAAAAAAAACTAAAAAAACACGCTTTTAAAGCAC
ATCGAACTAAAAAGTTAAAAATAATTTTTAAAATAAGTTTATAATAAATA
TGAATAAAAAATACTAGTATTATTGTGATAAAAACGTCGGTGCTTTGTGC
CATATTTTTCGTATATTGAGCGCCCGACGCTTTTATCACAATAATACTAG
TATTTTTTATTCATAATTATTTTAAACTTATTTTAAAAATTATTTTTAAC
TTTTTAGTTCGATGTGCTTTAAAAGCG

Coding sequence (CDS) from alignment at scaffold1527:4088..11614-

>DV3020608-RA ID=DV3020608-RA|Name=DV3020608-RA|organism=Daktulosphaira vitifoliae|type=CDS|length=207bp|location=Sequence derived from alignment at scaffold1527:4088..11614- (Daktulosphaira vitifoliae)
ATGGTAGAGGAAACAAGACAAAGTAATGGCCATGAAATCCAGAAAAATAA
TGGTGAAAATAGTGCATTTGCGGCGAAAAAATTGTTTAGAACGCAAAAAC
AAAAATATTCAAAATTTGGAAATCAACAAAATAATGATAGAAAACCAGGA
ATTTGCAATTTTTGTAAGAAACCAGGTCATTGGAAACTTCGATGTGCTTT
AAAAGCG