Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107173671 |
| Model evidence | Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | glutamate receptor ionotropic, delta-2-like |
| Transcript id | XM_015524300.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107173671 |
| Genbank | XM_015524300.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107173671 | gene177 | Diuraphis noxia | gene | JOTR01000003 912461..916414 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| id2207 | id2207 | Diuraphis noxia | exon | JOTR01000003 912461..913061 + |
| id2208 | id2208 | Diuraphis noxia | exon | JOTR01000003 915105..916414 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015379786.1 | cds256 | Diuraphis noxia | CDS | JOTR01000003 912550..913061 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna259 ID=rna259|Name=XM_015524300.1|organism=Diuraphis noxia|type=mRNA|length=1911bp|location=Sequence derived from alignment at JOTR01000003:912461..916414+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
CCGACGAGGCCCGCCGGGCCCGGCTGGACCGTCTGAGCAGGTCCGTCAAC
AAGATAATCGACGAGTACCTGGGAACCAGATCAGTAATAATGTTCTCAGA
CGAGGTGCGTAGCAGCGAGCTGGGTCAACGGCTGCTGGTCGACATGGGCC
AACCCAGGCTACTGGTGCAGTTGGCGAAGATCACCGACGCGAGGCTGCTG
GCCAACGGATTTGTCGTGTACCTGCAACGTGGCCAAGCGCAGCAGCACCG
GGACGGCCAGACGACTGACTACGATGGGGTGCTGGACAGATTGCCACCCA
GCGACCACTCGCGGCACATGGTGCTGTGGGACGTCGTGTCGCGGCCGGGC
GACCGCCTCGAACTGCACCGCATACAAATGCTGTTCGAGGCGTTCTGGCT
CCATCAGCTCGTCGACGTGGCCGTCCTGGTGCCCTTGTCCACCGGCAGCA
TACGAGTGTATGTGTTTAACCCGTACACCGGATCCAGGTGCAACGGGGCT
GGCCCACCAATCATGATCAACGTTTGGAGCAACTCGGCCGACAAGTTCAT
CAAGCCCGACAAAGTGTTCGGCATGGAGAACAAGTTAAAAGACTTGCAca
aatGTCCATTGAAGTGCTTGGGAATACACAGGCCACCCGTGTCGACGGTA
GTGCAAACGAAAAAAGGCTTCCAGCTATCTGGGTCAGGTTTGCGCATCAT
TAACTTCATGCAGGCATACATGAACTTCACCGGTATCGTTACCATGGCTT
ACGGCCATTCCAGGGTGGATTTCATCCCCGAGACGGCGGCCATGTCAGAC
AACGATAGTTCGCCGGTCAGCATGAAAGTGAAACACAAAAAGGTGGACTT
GGCATTCGGCCGGTTCACGAGGATTTTCGATAGAGAGTCCGACGTTGAGT
TTATCAAGGAAGACCAGATGGAATGTTTCACGTGGGGCTTGCCCAGCGGC
ATCGGTCATGACCCAATGCTGTGGATCAACTACATAGCTGAATTCTCACT
ATTAATCTGGATATTGATCATACTGAGCGTAATATTGGCGTTCGGCGTTA
TCGTCGCACTCTCGCAGCTTGCGTCCACGCTGCAGCTGCCGGAGTCTACG
GTCCCGTGGAGTCCACTGTTCATTCTGTTCTACACGTATGGCACGTTCAT
AAGCGCTCCGATCAAGGTCACGCCAAAATCGTGGTCACTGCAAATGTTTC
TGTCCAATTGGTTGCTGTACAGCCTGGTGTTGACAAGTGCGTACCAGGCG
TATTTGGGCAGTCTGATCACCATACCGCAAACTACTCCAGAAATAAACGA
CCAGCACACGCTGCTGAAGACCGAATTGAACTTGGTCGGTAGACAAGACA
TGTACTATCTGATTAACTCGTCGGCGGGCTCCAGCAACGATTTCAAAGAG
TTGGTCGACCGCTATCAAATATTGCCACCCGAAGACTTCGTTCACCTCAT
TCAGAGAATACTGTTGAAGAGAGACACAGCCGTCTTGGCGTCCAAACGTG
AACTGATATTTTATGCACAAAGGTACAAGTCGATTTTCAACGACTCGAGA
CATCTACACGTCTTGCCCAAGTGCGTGATCGAATCGTATTCGTCAACATT
TATGCTTCGAAAAGGATCGCCGTTTCGACATAGGATTAGCACCATTATGT
CGCAACTCTCGGAGACGGGCATTATGCAGCAATGGGATCGGGCAAACCTC
AAAGAAGAGCTGGTAAACAGCATTGTATTTACCGAGGACACGATTCTTTC
CATGTCACAATTTTACGGGGCATTTGTGGTTTTGTTTTTTGGATTGTTTT
TGGGCTTCAGTGCATTTGTTGGCGAAATCATTGTGTaccttataaataca
ttttgcatAAGACATACCAAACAAATTGTGTTCTTAAACTAACTATAAGA
CATAGGTAATA back to topprotein sequence of XM_015524300.1 >rna259 ID=rna259|Name=XM_015524300.1|organism=Diuraphis noxia|type=polypeptide|length=601bp
MFSDEVRSSELGQRLLVDMGQPRLLVQLAKITDARLLANGFVVYLQRGQA
QQHRDGQTTDYDGVLDRLPPSDHSRHMVLWDVVSRPGDRLELHRIQMLFE
AFWLHQLVDVAVLVPLSTGSIRVYVFNPYTGSRCNGAGPPIMINVWSNSA
DKFIKPDKVFGMENKLKDLHKCPLKCLGIHRPPVSTVVQTKKGFQLSGSG
LRIINFMQAYMNFTGIVTMAYGHSRVDFIPETAAMSDNDSSPVSMKVKHK
KVDLAFGRFTRIFDRESDVEFIKEDQMECFTWGLPSGIGHDPMLWINYIA
EFSLLIWILIILSVILAFGVIVALSQLASTLQLPESTVPWSPLFILFYTY
GTFISAPIKVTPKSWSLQMFLSNWLLYSLVLTSAYQAYLGSLITIPQTTP
EINDQHTLLKTELNLVGRQDMYYLINSSAGSSNDFKELVDRYQILPPEDF
VHLIQRILLKRDTAVLASKRELIFYAQRYKSIFNDSRHLHVLPKCVIESY
SSTFMLRKGSPFRHRISTIMSQLSETGIMQQWDRANLKEELVNSIVFTED
TILSMSQFYGAFVVLFFGLFLGFSAFVGEIIVYLINTFCIRHTKQIVFLN
. back to topmRNA from alignment at JOTR01000003:912461..916414+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna259 ID=rna259|Name=XM_015524300.1|organism=Diuraphis noxia|type=mRNA|length=3954bp|location=Sequence derived from alignment at JOTR01000003:912461..916414+ (Diuraphis noxia)
CCGACGAGGCCCGCCGGGCCCGGCTGGACCGTCTGAGCAGGTCCGTCAAC
AAGATAATCGACGAGTACCTGGGAACCAGATCAGTAATAATGTTCTCAGA
CGAGGTGCGTAGCAGCGAGCTGGGTCAACGGCTGCTGGTCGACATGGGCC
AACCCAGGCTACTGGTGCAGTTGGCGAAGATCACCGACGCGAGGCTGCTG
GCCAACGGATTTGTCGTGTACCTGCAACGTGGCCAAGCGCAGCAGCACCG
GGACGGCCAGACGACTGACTACGATGGGGTGCTGGACAGATTGCCACCCA
GCGACCACTCGCGGCACATGGTGCTGTGGGACGTCGTGTCGCGGCCGGGC
GACCGCCTCGAACTGCACCGCATACAAATGCTGTTCGAGGCGTTCTGGCT
CCATCAGCTCGTCGACGTGGCCGTCCTGGTGCCCTTGTCCACCGGCAGCA
TACGAGTGTATGTGTTTAACCCGTACACCGGATCCAGGTGCAACGGGGCT
GGCCCACCAATCATGATCAACGTTTGGAGCAACTCGGCCGACAAGTTCAT
CAAGCCCGACAAAGTGTTCGGCATGGAGAACAAGTTAAAAGACTTGCAca
agtataatgataatattattaaatgacagatataggtacctataaattat
gtattaggtaCTAGCGTACTGCCAATTATAGTAACACAGTCTCGATAACT
CGAATCTCGagggtaataaaaataaatcctatttggatacctacgtattt
tttgagatacctatataggtatatcccTTGGGcacaattattagtataat
agtataaattacatactTCGAGaggcaagaaaaaaaaaatttagttattg
cAGTTTTTCTAATTATTRCGGACATAAACCTACAAACGATACACCTTTAT
ATAGGTGAGTATTATTATTGGTGCGTGGTGACCACATTAAATTGGATTCC
AAATTTTGGTATTTATAAAGTCTACTCTTAATGAATTTtgctcaaaaatg
tatatttgaatttaaaaaaaactgtaaaagtattaaagtattattattaa
ttaacagctatattatgtatagttcagatattattcgattattttattaa
tacctatattttaataccatcgcagcttttacaaaaattactattaatca
ataaataattgtaatgtaatatattatgattttttaacttttaaaagtct
taacagttatttttccataaattttactttttttctgcatattttagtat
ttttattttttatagcacttatataaatatgttcaaaagcatattatttc
gctaagaaaaatattttttgaagctCTAACTTAGAggttaacattttaca
tttcataGACATGCGCAGAATTATGTTTTAAGTGGAACAAAGTTTTGGAT
ATAGAATCAATTAGTAGGTAAAACAGAAAGGAACATCTTTTAATTTTGCc
caaaatttcaattatttaagaaaaacacTATTTTTTCCACATAGGTATTT
GGTATATGTTGgcgcatatttaatatttagtMATTTTTTAGTGCTTATTT
GATCATATTTTGGTGGTTGTGtgcttattgtatatttgagtatttattAG
AGCTATATCATTACTTaatcattttactattttgtgcACAAATGCAAgca
tatttgtgtatttttaagaGCTAGAAGACCCTAAGCCAAacagtaatcat
aataatagttgacCATATTATCTGTTTCCATATTCTATTACTTGCTAATA
TTggcctaaaatatatttttgtagattgAAAACATGGTTACGATCCAGAA
TAGGCCAAAATCACTTAACAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNcataagtaatatattaaaattaaga
atcatACTAAACTTATTTGGTTACCTTGTGGTAATTGACTTCAGCTTAAA
TAgtcaattttgaattaatttattacgaattcttaatgaatatgatattt
attttatacattagtacattacataATCGtttcaaagttcaaataatttt
caataaaaWTAAAGGATAAGAAAAACCAATGTCAAATAACTAAATATGGT
ATAGTGTTACGAGATATCCAACCAACGAACATATTatggattaataataa
atattatttttatttttatctgcataatattgcatattttttagatGTCC
ATTGAAGTGCTTGGGAATACACAGGCCACCCGTGTCGACGGTAGTGCAAA
CGAAAAAAGGCTTCCAGCTATCTGGGTCAGGTTTGCGCATCATTAACTTC
ATGCAGGCATACATGAACTTCACCGGTATCGTTACCATGGCTTACGGCCA
TTCCAGGGTGGATTTCATCCCCGAGACGGCGGCCATGTCAGACAACGATA
GTTCGCCGGTCAGCATGAAAGTGAAACACAAAAAGGTGGACTTGGCATTC
GGCCGGTTCACGAGGATTTTCGATAGAGAGTCCGACGTTGAGTTTATCAA
GGAAGACCAGATGGAATGTTTCACGTGGGGCTTGCCCAGCGGCATCGGTC
ATGACCCAATGCTGTGGATCAACTACATAGCTGAATTCTCACTATTAATC
TGGATATTGATCATACTGAGCGTAATATTGGCGTTCGGCGTTATCGTCGC
ACTCTCGCAGCTTGCGTCCACGCTGCAGCTGCCGGAGTCTACGGTCCCGT
GGAGTCCACTGTTCATTCTGTTCTACACGTATGGCACGTTCATAAGCGCT
CCGATCAAGGTCACGCCAAAATCGTGGTCACTGCAAATGTTTCTGTCCAA
TTGGTTGCTGTACAGCCTGGTGTTGACAAGTGCGTACCAGGCGTATTTGG
GCAGTCTGATCACCATACCGCAAACTACTCCAGAAATAAACGACCAGCAC
ACGCTGCTGAAGACCGAATTGAACTTGGTCGGTAGACAAGACATGTACTA
TCTGATTAACTCGTCGGCGGGCTCCAGCAACGATTTCAAAGAGTTGGTCG
ACCGCTATCAAATATTGCCACCCGAAGACTTCGTTCACCTCATTCAGAGA
ATACTGTTGAAGAGAGACACAGCCGTCTTGGCGTCCAAACGTGAACTGAT
ATTTTATGCACAAAGGTACAAGTCGATTTTCAACGACTCGAGACATCTAC
ACGTCTTGCCCAAGTGCGTGATCGAATCGTATTCGTCAACATTTATGCTT
CGAAAAGGATCGCCGTTTCGACATAGGATTAGCACCATTATGTCGCAACT
CTCGGAGACGGGCATTATGCAGCAATGGGATCGGGCAAACCTCAAAGAAG
AGCTGGTAAACAGCATTGTATTTACCGAGGACACGATTCTTTCCATGTCA
CAATTTTACGGGGCATTTGTGGTTTTGTTTTTTGGATTGTTTTTGGGCTT
CAGTGCATTTGTTGGCGAAATCATTGTGTaccttataaatacattttgca
tAAGACATACCAAACAAATTGTGTTCTTAAACTAACTATAAGACATAGGT
AATA back to topCoding sequence (CDS) from alignment at JOTR01000003:912461..916414+ >rna259 ID=rna259|Name=XM_015524300.1|organism=Diuraphis noxia|type=CDS|length=1803bp|location=Sequence derived from alignment at JOTR01000003:912461..916414+ (Diuraphis noxia)
ATGTTCTCAGACGAGGTGCGTAGCAGCGAGCTGGGTCAACGGCTGCTGGT
CGACATGGGCCAACCCAGGCTACTGGTGCAGTTGGCGAAGATCACCGACG
CGAGGCTGCTGGCCAACGGATTTGTCGTGTACCTGCAACGTGGCCAAGCG
CAGCAGCACCGGGACGGCCAGACGACTGACTACGATGGGGTGCTGGACAG
ATTGCCACCCAGCGACCACTCGCGGCACATGGTGCTGTGGGACGTCGTGT
CGCGGCCGGGCGACCGCCTCGAACTGCACCGCATACAAATGCTGTTCGAG
GCGTTCTGGCTCCATCAGCTCGTCGACGTGGCCGTCCTGGTGCCCTTGTC
CACCGGCAGCATACGAGTGTATGTGTTTAACCCGTACACCGGATCCAGGT
GCAACGGGGCTGGCCCACCAATCATGATCAACGTTTGGAGCAACTCGGCC
GACAAGTTCATCAAGCCCGACAAAGTGTTCGGCATGGAGAACAAGTTAAA
AGACTTGCAcaaatGTCCATTGAAGTGCTTGGGAATACACAGGCCACCCG
TGTCGACGGTAGTGCAAACGAAAAAAGGCTTCCAGCTATCTGGGTCAGGT
TTGCGCATCATTAACTTCATGCAGGCATACATGAACTTCACCGGTATCGT
TACCATGGCTTACGGCCATTCCAGGGTGGATTTCATCCCCGAGACGGCGG
CCATGTCAGACAACGATAGTTCGCCGGTCAGCATGAAAGTGAAACACAAA
AAGGTGGACTTGGCATTCGGCCGGTTCACGAGGATTTTCGATAGAGAGTC
CGACGTTGAGTTTATCAAGGAAGACCAGATGGAATGTTTCACGTGGGGCT
TGCCCAGCGGCATCGGTCATGACCCAATGCTGTGGATCAACTACATAGCT
GAATTCTCACTATTAATCTGGATATTGATCATACTGAGCGTAATATTGGC
GTTCGGCGTTATCGTCGCACTCTCGCAGCTTGCGTCCACGCTGCAGCTGC
CGGAGTCTACGGTCCCGTGGAGTCCACTGTTCATTCTGTTCTACACGTAT
GGCACGTTCATAAGCGCTCCGATCAAGGTCACGCCAAAATCGTGGTCACT
GCAAATGTTTCTGTCCAATTGGTTGCTGTACAGCCTGGTGTTGACAAGTG
CGTACCAGGCGTATTTGGGCAGTCTGATCACCATACCGCAAACTACTCCA
GAAATAAACGACCAGCACACGCTGCTGAAGACCGAATTGAACTTGGTCGG
TAGACAAGACATGTACTATCTGATTAACTCGTCGGCGGGCTCCAGCAACG
ATTTCAAAGAGTTGGTCGACCGCTATCAAATATTGCCACCCGAAGACTTC
GTTCACCTCATTCAGAGAATACTGTTGAAGAGAGACACAGCCGTCTTGGC
GTCCAAACGTGAACTGATATTTTATGCACAAAGGTACAAGTCGATTTTCA
ACGACTCGAGACATCTACACGTCTTGCCCAAGTGCGTGATCGAATCGTAT
TCGTCAACATTTATGCTTCGAAAAGGATCGCCGTTTCGACATAGGATTAG
CACCATTATGTCGCAACTCTCGGAGACGGGCATTATGCAGCAATGGGATC
GGGCAAACCTCAAAGAAGAGCTGGTAAACAGCATTGTATTTACCGAGGAC
ACGATTCTTTCCATGTCACAATTTTACGGGGCATTTGTGGTTTTGTTTTT
TGGATTGTTTTTGGGCTTCAGTGCATTTGTTGGCGAAATCATTGTGTacc
ttataaatacattttgcatAAGACATACCAAACAAATTGTGTTCTTAAAC
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