Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107165310 |
| Model evidence | Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | elongation of very long chain fatty acids protein 4-like, transcript variant X4 |
| Transcript id | XM_015513513.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107165310 |
| Genbank | XM_015513513.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107165310 | gene638 | Diuraphis noxia | gene | JOTR01000011 1053266..1057323 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015368999.1 | cds904 | Diuraphis noxia | CDS | JOTR01000011 1055563..1055727 - |
The following exon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna926 ID=rna926|Name=XM_015513513.1|organism=Diuraphis noxia|type=mRNA|length=1138bp|location=Sequence derived from alignment at JOTR01000011:1053266..1057322- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
CGGTCGGCATCGGTGTGTTTATCTTCATAGTAGTACGTTGTTGTACGGCA
AGTACGCACGCCACTGTATAATATTGTGCACATCGATATTCGTTTTACAT
TTCCGTACACGTTTGAAAAAAAAAAAAAAATTGATTTGGTTGTATTAAAT
AATAATTACATCGTTTATTGTCATCATAATATGAGCTAAGCCTAGTGCTC
ATATACGCCGTTACACAACTAGAGAATTTACAGTATTCCATTTAGATTAC
AACTTATCTACATTATTTGAACAAGTGGAACATTTTAATCAATGGACTGA
ATCGCTAAGTGATTCTAGAACCAGAGGGTGGTGGATGGTAAATTCAGTTT
TCACTACATTTACTATAGCTCTTTGTTACCTTTTAATAGTATGGCTGACT
CCACTGTATATGAAAAATCGCACAGCATACAACTTAAGAAATGTTCTAAT
AATATACAATATCATAATGATAATAACAAATTTATTCATAATAATAGAAA
TGATATTGATGACTACTAAATTAAACTATAGTTGGATGTGTCAGCCAATA
ACCTATGTCAATGCAGAAGCTGAGCTTAGGATAGCAACAGCAGTTTGGTT
ATATTATATAGTTAAATTTTTTGAATTATTGGACACTATATTTTTGATAC
TCAGGAAGAAAGATAATCAACTATCATTTCTTCATGTCTACCATCATTCA
ACAATGTTCATATTCTCGTGGCTAGGAACAAAATATGTACCTGGAGGCTC
AGCATTTCTACCGGTATTAATCAACAGTACTGTACATGTTATAATGTATT
CTTACTATACATTAGCAGCAATGCAATGTTCAAAAATCTTCAAATACAAA
AAATATGTTACAATCATTCAATTGGCTCAATTTTCATTTGCTCTACCATT
AGGCATAAATGCCATACAAAGTGAGTGTAAATGGCCATTATGGATGAAAT
ATTTATTTGTCTTTTATATTATTACAATGCTGATTTTATTTGGAGACTTT
TATAAGAAAAATTATGTTAAAAAAATAAGCAACAATGAAAGTGAAGTCGG
ACAATGTTTAAAGAAATTGTGATATTTTAATTAAACATTCAATTAAGCCT
AAAAAGTATTTATTTTTTAATAGAAATTAATGTATACA back to topprotein sequence of XM_015513513.1 >rna926 ID=rna926|Name=XM_015513513.1|organism=Diuraphis noxia|type=polypeptide|length=246bp
MVNSVFTTFTIALCYLLIVWLTPLYMKNRTAYNLRNVLIIYNIIMIITNL
FIIIEMILMTTKLNYSWMCQPITYVNAEAELRIATAVWLYYIVKFFELLD
TIFLILRKKDNQLSFLHVYHHSTMFIFSWLGTKYVPGGSAFLPVLINSTV
HVIMYSYYTLAAMQCSKIFKYKKYVTIIQLAQFSFALPLGINAIQSECKW
PLWMKYLFVFYIITMLILFGDFYKKNYVKKISNNESEVGQCLKKL. back to topmRNA from alignment at JOTR01000011:1053266..1057322- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna926 ID=rna926|Name=XM_015513513.1|organism=Diuraphis noxia|type=mRNA|length=4057bp|location=Sequence derived from alignment at JOTR01000011:1053266..1057322- (Diuraphis noxia)
CGGTCGGCATCGGTGTGTTTATCTTCATAGTAGTACGTTGTTGTACGGCA
AGTACGCACGCCACTGTATAATATTGTGCACATCGATATTCGTTTTACAT
TTCCGTACACGTTTGAAAAAAAAAAAAAAATTGATTTGGTTGTATTAAAT
AATAATTACATCGTTTATTGTCATCATAATATGAGCTAAGCCTAGTGCTC
ATATACGCCGTTACACAACTAGGTACACAAGCCATTAATTTWTTTTTTTT
TATTCAGTGCCAGTTAGAGTCTATGTTATATTAAAATATAATATATAAAT
ACACATAGTCTTAAGCGGTTCACAAACACTGAAATATAAATTCAATACAA
ATAACAATGTATACTGCACCAAACGAGTGAGTTTTTAACACCTATAATAG
TATTATGTTGTCCTATCTATTAGAACGTTACCTACTTAATTAGGCATATA
ACGACAATACATATATATTTTAAATATTTTTTCAAATACAGTTTCTGAAA
GGAGATTAAAAATTGGAATTAAAATATTAACGGCATTTCATAGTAATTTG
ATATAGTTACATAAGTATTAGTCAATGATTTAAAATAGTAGGAATTAGTA
CCTATATTATTAAACAGCTAGGGMGCATCTCAACACATGGTTTTATGATA
ACGGATTAAAAAATGCTTTCATGAAAGCAAATTAATTGACTAGGTTACTC
AAACCTCAAAACCTTAACAGGACGCTATACGCGCATGTAAACTCTTTTCG
TCTTACTGATAGATAACATGAAACATTTTCCGTTTAGCTCTACCTATTAT
CAAACTTAAATTGAGAATATTATTTCTTTGGCCCTTTGTAGGCTAGGCTT
TTTGTATTTTAATTTTAGTGCAGATTATGAGAATTTTAAAGWTGTAAATT
AAACGTAGACATTGAACAATTTATGTGGGTATAATGACTATAATGTCCTA
TTAACTTGATATTTTTAATTCTTAATAATGGTATTCATCATCAMACGTAT
GAGTGTAAAATGCCTATACAGAGCCCCGTTTAATAGGCACTATAAGTACA
TCCTATTATAAATTATGATCAGTTCACATAATATTTTGCGTCGGAATTAG
ACAAATTACTATTTAGTTTAAATTATAGATTTTTATTTTATTTTAATAGT
GTAGAAAATAAATGTTTTCTGAATTTTTTGTGTCTGTGTGTGGGGGGGGG
GGACTAAGCCTTCCTAATTTGATTTACTATAGTACTATACAATAAAAAAA
AACTACAAAATATATAGATACAATAGATTTTTGGTTATTCTAAGTGGTTT
TTATTAATAATTAATAATTAATTGATATTTTTTTAGAGAATTTACAGTAT
TCCATTTAGATTACAACTTATCTACATTATTTGAACAAGTGGAACATTTT
AATCAATGGACTGAATCGCTAAGTGGTAATTATGTTTGATGTTAATCATA
ATTATTAAATTGTATTTAAATTTAAAAGAACCAATAAAGAAATATTAAAA
TTTTATATAATTTGTTCTGTGATATCATTATTTTATATTAGTGACAATAT
GATTTTTTTATTGTTACAATAGATTCTAGAACCAGAGGGTGGTGGATGGT
AAATTCAGTTTTCACTACATTTACTATAGCTCTTTGTTACCTTTTAATAG
TATGGCTGACTCCACTGTATATGAAAAATCGCACAGCATACAACTTAAGA
AATGTTCTAATAATATACAATATCATAATGATAATAACAAATTTATTCAT
AATAATAGAAGTAATGAAAATTAGATTCATTAAATTCATCATTAATTAGT
ATCTAAAAACTTATATAAATATATTTCCAGATGATATTGATGACTACTAA
ATTAAACTATAGTTGGATGTGTCAGCCAATAACCTATGTCAATGCAGAAG
CTGAGCTTAGGGTAAATCTTGATGTTGAATGTTGATAGTAATTAATTTTA
AATTTCAATTGGAAAATATTAAAAAACTTTTCTTAAAATAATATGCATAA
AAATTATAAATGGGGTATTAAGTTATAATTTTTTATTAGTATAATAGTAT
ATTAATGTTGGATAGAGAAAGGTATATTTATCAGTTTACCATACAAAAAT
TACACATTATTCTTATGTATTACAGTATTAGTATGCATTCAAAATTGCAT
TCAAATAAATTTTAGAAAATATTAGTAACTAACATGAACAGACAGAAAAT
AATTAGTTTATTTTGACTGGTTAAAAGAAATATAGTATACCTATACTATA
ATATAAAATATTAAAATACTTAACTTGAATTGTATTCAATTTAACACATT
TAAAGTTAACACTAAATTAAATCAAATAAGAAAATATTTTAATATAATTT
ATTTATTGCAGATAGCAACAGCAGTTTGGTTATATTATATAGTTAAATTT
TTTGAATTATTGGACACTATATTTTTGATACTCAGGAAGAAAGATAATCA
ACTATCATTTCTTCATGTCTACCATCATTCAACAATGTTCATATTCTCGT
GGCTAGGAACAAAATATGTACCTGGAGGCTCAGCATTTCTACCGGTATTA
ATCAACAGTACTGTACATGTTATAATGTATTCTTACTATACATTAGCAGC
AATGCAATGTTCAAAAATCTTCAAATACAAAAAATATGTTACAATCATTC
AATTGGTAAAAATAATCATTATTTAATTATAGTTATAGATCAGATATAAA
TTAGTTATAGGGTAATATAGACAAAATTACTTGAGATGCTGTTTTCTGCC
AGTCACTATATATTTACTTAGTTACCAAGTTAATACATTAGCCTACATTA
GACACTCTTTTGAGCGGATCCCTTGAAGTGTCTTAAACAAGTTTCAATGT
ATTAGAACTAGTAAATTCAATAATTTTGTAGAAGTTACCTATATTTTAAC
ACATCTATTTTATATATGTATTTCAAAGTTTTGATTCAATATGAGTATTG
TCAGTTAATATTTTAGCAAAACATAAAATATATCTAATATAGTACATAGG
AAGGTTGTATTATAAGAAATTCATTAAAAYATTATTAAACTTATATAWWA
TAAAATATTATATTGACCTGAAAATAATGAATATTTTATAGGGATTAATA
TTTCACAGCTATTTTTATTTCAGCTTTTTAAAATTGATTTTTAGAATAAG
AAAAATCAGTTATTAAGAGATTAGTTAGTTATGTTGTATATGAATATCTA
CGTTAAAATTCTCATGTTACATCTATATAACCAATACAATTTTGGCTATT
AGGTATAATCAGCTCAGTGTTCATTGCTTAAACATTAAAATATACAAATA
CAATGCTTTGATGAAATAATGGCATAAATTTAAGTACAGTAAAATCTCGT
TAAGACAAAATCGCTTAGGACCGTCCAATTTTTTTTGTCTTATAATGGAG
TTTCAGACTTTAAGACAGGGGATCACCATTCACACTCATTATATAATTGT
TCGAATTATCGGGGTTTCTGTCTAACAGAAGTTCTGTCTTATTGAAGTTT
TACTGTACCTACAAATAAATAATTATCAATTTTTTTTTATGTAATGCAAT
AGGAAATATGTTCTAATCTTTAATGATACAAGTGTAGGTACTTATGGCTA
TTACTTTATTCTTCACCCCTTTCTCATTTTTAAGTCTTTATAATCTCATT
TCCTATATATTTTTGTTTTTAGGCTCAATTTTCATTTGCTCTACCATTAG
GCATAAATGCCATACAAAGTGAGTGTAAATGGCCATTATGGATGAAATAT
TTATTTGTCTTTTATATTATTACAATGCTGATTTTATTTGGAGACTTTTA
TAAGAAAAATTATGTTAAAAAAGTATGTAAAATAATTATATAATCACTTA
TTAATAACTTATATTTTACTGTTAAATAAGTATATAAATGTATAATACAA
TATAAAAAAAAATTAACTAAATAGGTACAAAATGTTGTTATAGATAAGCA
ACAATGAAAGTGAAGTCGGACAATGTTTAAAGAAATTGTGATATTTTAAT
TAAACATTCAATTAAGCCTAAAAAGTATTTATTTTTTAATAGAAATTAAT
GTATACA back to topCoding sequence (CDS) from alignment at JOTR01000011:1053266..1057322- >rna926 ID=rna926|Name=XM_015513513.1|organism=Diuraphis noxia|type=CDS|length=738bp|location=Sequence derived from alignment at JOTR01000011:1053266..1057322- (Diuraphis noxia)
ATGGTAAATTCAGTTTTCACTACATTTACTATAGCTCTTTGTTACCTTTT
AATAGTATGGCTGACTCCACTGTATATGAAAAATCGCACAGCATACAACT
TAAGAAATGTTCTAATAATATACAATATCATAATGATAATAACAAATTTA
TTCATAATAATAGAAATGATATTGATGACTACTAAATTAAACTATAGTTG
GATGTGTCAGCCAATAACCTATGTCAATGCAGAAGCTGAGCTTAGGATAG
CAACAGCAGTTTGGTTATATTATATAGTTAAATTTTTTGAATTATTGGAC
ACTATATTTTTGATACTCAGGAAGAAAGATAATCAACTATCATTTCTTCA
TGTCTACCATCATTCAACAATGTTCATATTCTCGTGGCTAGGAACAAAAT
ATGTACCTGGAGGCTCAGCATTTCTACCGGTATTAATCAACAGTACTGTA
CATGTTATAATGTATTCTTACTATACATTAGCAGCAATGCAATGTTCAAA
AATCTTCAAATACAAAAAATATGTTACAATCATTCAATTGGCTCAATTTT
CATTTGCTCTACCATTAGGCATAAATGCCATACAAAGTGAGTGTAAATGG
CCATTATGGATGAAATATTTATTTGTCTTTTATATTATTACAATGCTGAT
TTTATTTGGAGACTTTTATAAGAAAAATTATGTTAAAAAAATAAGCAACA
ATGAAAGTGAAGTCGGACAATGTTTAAAGAAATTGTGA back to top
|