|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107161901 |
| Model evidence | Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | transmembrane protein 258, transcript variant X2 |
| Transcript id | XM_015508511.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107161901 |
| Genbank | XM_015508511.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107161901 | gene3057 | Diuraphis noxia | gene | JOTR01000085 356687..359240 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| id38719 | id38719 | Diuraphis noxia | exon | JOTR01000085 356687..356796 + |
| id38720 | id38720 | Diuraphis noxia | exon | JOTR01000085 356859..356971 + |
| id38721 | id38721 | Diuraphis noxia | exon | JOTR01000085 358995..359240 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015363997.1 | cds4355 | Diuraphis noxia | CDS | JOTR01000085 358999..359232 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna4481 ID=rna4481|Name=XM_015508511.1|organism=Diuraphis noxia|type=mRNA|length=469bp|location=Sequence derived from alignment at JOTR01000085:356687..359240+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
tttgtttactaaaacatagaaaaaaccGGAAACTTGGTGCTACGTTCATA
TATGTACAACAACGCATGGACGCCGGACGATTTTCGTTGCCAACTTTTAT
CTGCTGATACGGGGATTACCATCGGCCATCGGGAAAAGCCGACTAAAGAA
GTAACGACAATAGAGGCGATTCATTCACCCTCCTGAAGATATTTAAACGG
AACGGAATTCGCCCGTCGACGAGcaCAATGACACTGTACAAGCGGTATGT
GTCTCCAGTTAGCCCAGCAGTATATCCACACCTGACTTTATTATTGCTCA
GCATTGGTGTGTTTTTCACGGCATGGTTTTTTGTCTATGAAGTTACTGGT
ACAAAGTATAccagaaatttgaaaaaagaacTGACCATATCTTTTGTTGC
TGCTCTATTTACCGGCTTTGGTATTCTGTTCTTATTATTATGGGTtggaa
tatatgtataatgcattat back to topprotein sequence of XM_015508511.1 >rna4481 ID=rna4481|Name=XM_015508511.1|organism=Diuraphis noxia|type=polypeptide|length=78bp
MTLYKRYVSPVSPAVYPHLTLLLLSIGVFFTAWFFVYEVTGTKYTRNLKK
ELTISFVAALFTGFGILFLLLWVGIYV. back to topmRNA from alignment at JOTR01000085:356687..359240+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4481 ID=rna4481|Name=XM_015508511.1|organism=Diuraphis noxia|type=mRNA|length=2554bp|location=Sequence derived from alignment at JOTR01000085:356687..359240+ (Diuraphis noxia)
tttgtttactaaaacatagaaaaaaccGGAAACTTGGTGCTACGTTCATA
TATGTACAACAACGCATGGACGCCGGACGATTTTCGTTGCCAACTTTTAT
CTGCTGATACGTATACACACTACACGGTGGTCgtggtcatattattattt
taatttttatatataactgtaGGGGGATTACCATCGGCCATCGGGAAAAG
CCGACTAAAGAAGTAACGACAATAGAGGCGATTCATTCACCCTCCTGAAG
ATATTTAAACGGAACGGAATTCGCCCGTCGACGAGGtaaatcggtttttt
ttttatctataatcaCATTTTACTATGATTTACGGTTTTTGCATTTTGTT
CTCGTGACCGGCGTTTCTTTTGTTTTGACCTCTTAGCTTTTCCGCGCTTC
GTTTCCAGTTCGTTTTAGCGCTGTTGGTTTGAAAATCGAATCACTTTAAA
TCTCCGGTCGATTCCGATAAAAATGACGGACATTCAGGCGAAATCGAGTT
TTGGCACGGCGCTGTTGAATCTGCACAGCGGTTACACGGATTCGCTGCCG
GGGAGAGAGAAGCATATTGAGTGTTTGAAATCGTTCTTAAAAAAACACGT
CCAAGACCACCGCTCKGTTTCTATGTACATATCTGGACCGCCGGGTACTG
GCAAGACTGTGTCACTTCATTCATTGTTTGCCAGCGATTTGGTCATTGAC
AATTTCACCCTGGTGTACGTGAACTGTAGTATGATTAAATCAGCAAACCG
TGTGTATGCCAAAATcgctgaaattttaaaaattggatCTGGTACTCAAA
GGGAATGCATTTCGACCATTGAGCAGTACTTAAAAAGCAAACACAAATCT
ATTCTCATGGTACTCGATGAAATTGATCAACTGTCGTCTAAAAATCAATC
gatattgtatcaaatatttgaatggCCTATCATTCCTCAATCAAATATAG
TCGTCATTGGTATTGCAAACTCTTTGGATCTTACTGATCGATTGTTGCCA
ATGTTAAAGACTAAGGTTTCTTTACAACCGGAACTCCTAAATTTTCCACC
TTATACGAAAACAGAGTTGGCTAGTATTATATCTCATAGATTAGAAAATG
CTGGGGTTAAGGAAATATTTCCTACCAATGCGATTCAGCTTTTATCTGCT
AAAATAGCTTCTATTCGAGGTGATATTCGTTTTGCATTGGATGTTACTAG
AAGAGTTATTGAATTAGCAGATGATAAAGCtgacaaaaaaattgaattaa
ttgatgTGATAGCTGTGTTGAATAATGTGTATTCCACTTCTGGTGCACTc
gataatgaaaatgaaaattctgAAAAATTACCATTACAACAAGAATTAGT
GGTTTgcgcaatattattgttattatcttcTGGTAAGAAAAGTCAAGTTA
TTACCATAGGAAAAGTATTCAATGTCTTTACAACTATTTGTAAAAAACGC
AACATTCAAGTAAGGGATCTAAGCGAATTCATAACCATGTGTTCATTATT
AGAAACAAGAGGTGTAATCAAGATTCTAGGACAGAGTGTAAACAGATTAT
CCAAAGTATTGTTACTTTGggataaaaatgaaattgatgATGTACTACAT
GACAAACAACTTTTGGTTGATGTCTTAAATGATAAATCTCTattaataca
atgatattttatttaaatcaaaatatatagatttttttcttttcactaTC
TTTCAACATTTGTAGCAAATATTTTCACTGTTTTTACATTTGTAACTAAG
CATTATCCAtagaaaatgcattatttttatgtaattttttttattatgtt
tagggtatttaattttatacttagattgtttacttttataaatatcttag
aataattgtatatttttttaataaaatcttgtttatttttattcaYtttt
attttattttattttctttgtttataaaataaaaaaaataatacctacat
tttttcaatagtaAGCATATTCTAACTTCAATGACACGTAAATACAGTTA
TGaagtaatgtaaattaatttggcCTGACTCAGTAACAGTTGAATAGGTC
TTATAAATCATTCTgtacagttttgaaaaaatgaagGATTATGTTTTGCT
TGGTTGTTGTCTAATTGTCTTATTGTACTTATACCATAGACctaatattt
aaacttgaactactatttttatttaaaacgtttcTTATAAcaattatggt
atataatatggtatatatggtatatattatctCTCAATATATGTTactgt
ctattattattatgttttgtaccctaattttgtattgaattttgttattt
ttgtttagcaCAATGACACTGTACAAGCGGTATGTGTCTCCAGTTAGCCC
AGCAGTATATCCACACCTGACTTTATTATTGCTCAGCATTGGTGTGTTTT
TCACGGCATGGTTTTTTGTCTATGAAGTTACTGGTACAAAGTATAccaga
aatttgaaaaaagaacTGACCATATCTTTTGTTGCTGCTCTATTTACCGG
CTTTGGTATTCTGTTCTTATTATTATGGGTtggaatatatgtataatgca
ttat back to topCoding sequence (CDS) from alignment at JOTR01000085:356687..359240+ >rna4481 ID=rna4481|Name=XM_015508511.1|organism=Diuraphis noxia|type=CDS|length=234bp|location=Sequence derived from alignment at JOTR01000085:356687..359240+ (Diuraphis noxia)
ATGACACTGTACAAGCGGTATGTGTCTCCAGTTAGCCCAGCAGTATATCC
ACACCTGACTTTATTATTGCTCAGCATTGGTGTGTTTTTCACGGCATGGT
TTTTTGTCTATGAAGTTACTGGTACAAAGTATAccagaaatttgaaaaaa
gaacTGACCATATCTTTTGTTGCTGCTCTATTTACCGGCTTTGGTATTCT
GTTCTTATTATTATGGGTtggaatatatgtataa back to top
|