jg10627.t1 (mRNA) Eriosoma lanigerum

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejg10627.t1
Unique Namejg10627.t1
TypemRNA
OrganismEriosoma lanigerum (Woolly apple aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43contigscaffold_43:24417..24923 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Eriosoma lanigerum OGS1.02020-07-06 .483843
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jg10627jg10627Eriosoma lanigerumgenescaffold_43 24417..24923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jg10627.t1jg10627.p1Eriosoma lanigerumpolypeptidescaffold_43 24417..24923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
jg10627.t1.CDS1jg10627.t1.CDS1Eriosoma lanigerumCDSscaffold_43 24417..24923 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
jg10627.t1.exon1jg10627.t1.exon1Eriosoma lanigerumexonscaffold_43 24417..24923 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>jg10627.t1 ID=jg10627.t1|Name=jg10627.t1|organism=Eriosoma lanigerum|type=mRNA|length=507bp|location=Sequence derived from alignment at scaffold_43:24417..24923+ (Eriosoma lanigerum)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGAACTCTTCAAGACAACATGCAACTATACAGGGAAAAGCAGCC
ATTCAAATACATTCCACCAGCACCACCAAAAGATTTAATAGATGCAACGT
CGTATCTGGATTTTATATCACGAAAATTTGTTGTGGTCGGATTAGCTCCA
GGCGAAGACTTTAATGCCAAAGTACATATAATAACATCGTCAAGACATGT
AGTTATAACTCCTGAATTTTTAAAACGTATATATCATTTCATAGGGAATA
TTTTATCGATCATTCTTGACACTTTCGATAAGTCAAGTACTCGAGTATTT
ATAGAAGACGATGAAATTTGCGTTTCAAAAATGTTGTATCGCGGAGAGAA
TATGGCTGTGATCGAATCAAAAACTATTAAAGAATGCCGAATACTACTCA
ACCGGCAAGATTTGCTTGCTTTACAAAATTTGGAAATGTGTATATTCGAT
GCAATTCACAGAAAAAATGATAATTCACGACCAGCAATTACGAATCAAAT
AAAATAG
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protein sequence of jg10627.t1

>jg10627.p1 ID=jg10627.p1|Name=jg10627.t1|organism=Eriosoma lanigerum|type=polypeptide|length=169bp
MAGTLQDNMQLYREKQPFKYIPPAPPKDLIDATSYLDFISRKFVVVGLAP
GEDFNAKVHIITSSRHVVITPEFLKRIYHFIGNILSIILDTFDKSSTRVF
IEDDEICVSKMLYRGENMAVIESKTIKECRILLNRQDLLALQNLEMCIFD
AIHRKNDNSRPAITNQIK*
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mRNA from alignment at scaffold_43:24417..24923+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>jg10627.t1 ID=jg10627.t1|Name=jg10627.t1|organism=Eriosoma lanigerum|type=mRNA|length=507bp|location=Sequence derived from alignment at scaffold_43:24417..24923+ (Eriosoma lanigerum)
ATGGCCGGAACTCTTCAAGACAACATGCAACTATACAGGGAAAAGCAGCC
ATTCAAATACATTCCACCAGCACCACCAAAAGATTTAATAGATGCAACGT
CGTATCTGGATTTTATATCACGAAAATTTGTTGTGGTCGGATTAGCTCCA
GGCGAAGACTTTAATGCCAAAGTACATATAATAACATCGTCAAGACATGT
AGTTATAACTCCTGAATTTTTAAAACGTATATATCATTTCATAGGGAATA
TTTTATCGATCATTCTTGACACTTTCGATAAGTCAAGTACTCGAGTATTT
ATAGAAGACGATGAAATTTGCGTTTCAAAAATGTTGTATCGCGGAGAGAA
TATGGCTGTGATCGAATCAAAAACTATTAAAGAATGCCGAATACTACTCA
ACCGGCAAGATTTGCTTGCTTTACAAAATTTGGAAATGTGTATATTCGAT
GCAATTCACAGAAAAAATGATAATTCACGACCAGCAATTACGAATCAAAT
AAAATAG
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Coding sequence (CDS) from alignment at scaffold_43:24417..24923+

>jg10627.t1 ID=jg10627.t1|Name=jg10627.t1|organism=Eriosoma lanigerum|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_43:24417..24923+ (Eriosoma lanigerum)
ATGGCCGGAACTCTTCAAGACAACATGCAACTATACAGGGAAAAGCAGCC
ATTCAAATACATTCCACCAGCACCACCAAAAGATTTAATAGATGCAACGT
CGTATCTGGATTTTATATCACGAAAATTTGTTGTGGTCGGATTAGCTCCA
GGCGAAGACTTTAATGCCAAAGTACATATAATAACATCGTCAAGACATGT
AGTTATAACTCCTGAATTTTTAAAACGTATATATCATTTCATAGGGAATA
TTTTATCGATCATTCTTGACACTTTCGATAAGTCAAGTACTCGAGTATTT
ATAGAAGACGATGAAATTTGCGTTTCAAAAATGTTGTATCGCGGAGAGAA
TATGGCTGTGATCGAATCAAAAACTATTAAAGAATGCCGAATACTACTCA
ACCGGCAAGATTTGCTTGCTTTACAAAATTTGGAAATGTGTATATTCGAT
GCAATTCACAGAAAAAATGATAATTCACGACCAGCAATTACGAATCAAAT
AAAATAG
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