jg1080.t1 (mRNA) Eriosoma lanigerum

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejg1080.t1
Unique Namejg1080.t1
TypemRNA
OrganismEriosoma lanigerum (Woolly apple aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4507contigscaffold_4507:1..1235 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Eriosoma lanigerum OGS1.02020-07-06 .483843
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jg1080jg1080Eriosoma lanigerumgenescaffold_4507 1..1235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jg1080.t1jg1080.p1Eriosoma lanigerumpolypeptidescaffold_4507 1..1235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
jg1080.t1.CDS1jg1080.t1.CDS1Eriosoma lanigerumCDSscaffold_4507 1..200 -
jg1080.t1.CDS2jg1080.t1.CDS2Eriosoma lanigerumCDSscaffold_4507 1148..1235 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
jg1080.t1.exon1jg1080.t1.exon1Eriosoma lanigerumexonscaffold_4507 1..200 -
jg1080.t1.exon2jg1080.t1.exon2Eriosoma lanigerumexonscaffold_4507 1148..1235 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>jg1080.t1 ID=jg1080.t1|Name=jg1080.t1|organism=Eriosoma lanigerum|type=mRNA|length=288bp|location=Sequence derived from alignment at scaffold_4507:1..1235- (Eriosoma lanigerum)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGTACACTCCAAATTACTGCAAAAGTGGCGGAAAAGTACGTATCT
GTCTGCTAAAGTCCAAATAAATCGGTTTATATCAAGTAAACTTGAAGGTC
CAGAGACTGAAACTGCAGAAAATAAATTACCAGAATATAATGATTTAATA
TCTGATAATGTTTTAATAAAAAGTGAACAAAATTTTGAAAACAATATTGA
CAATTTACCATCAACTTTAGATTATAAAGACCCTAGTTCATGGCCAAATT
TACGTTTAGATTCACATAGGTCATGCACAATAAAATCA
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protein sequence of jg1080.t1

>jg1080.p1 ID=jg1080.p1|Name=jg1080.t1|organism=Eriosoma lanigerum|type=polypeptide|length=96bp
MYVHSKLLQKWRKSTYLSAKVQINRFISSKLEGPETETAENKLPEYNDLI
SDNVLIKSEQNFENNIDNLPSTLDYKDPSSWPNLRLDSHRSCTIKS
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mRNA from alignment at scaffold_4507:1..1235-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>jg1080.t1 ID=jg1080.t1|Name=jg1080.t1|organism=Eriosoma lanigerum|type=mRNA|length=1235bp|location=Sequence derived from alignment at scaffold_4507:1..1235- (Eriosoma lanigerum)
ATGTACGTACACTCCAAATTACTGCAAAAGTGGCGGAAAAGTACGTATCT
GTCTGCTAAAGTCCAAATAAATCGGTTTATATCAAGTAGTATGTACTACC
CTCGATTTATTTGGGTACGTCGTAAAAAGTATCTGTATCTTAATACGTCG
TATAACCAATAATCGCCAAAAGATGCAAAACCGACAAAAAAAATGTACGT
ACACTTGAAAATATTGCAAAAAGTGGCGGAAAAGTACGTATCTGTCTATT
GAACTCCAAATAAATCGGTTTATATTAGGTAGTACGTACTACTTCGATTA
ATTTGGTTATGTCAAAAAAAGTATCTGTACGTCGTATTAGTTTTTCATGT
ACAAACTATAGCAAACGTTTTTTTTATTAATAATGGTTATTTGTCAAAAT
TTTGCATCAGTCTGCTGAATTTTAAATATATCGGTTTATATTTAAAAACA
ATTCTAGGCACAATGGTACAAAATGTAACCAATACACTCCAAAAGATGCA
AAACCGACAAAAACGTACGCACAGTACATATAAGTTTTTACTATAATATA
TGAATAGATGATTGTGTATACAATAATATTCATACTATTTTAATTCACGT
TAGTTTTAAACAAATTGTTAATTTTTATTAAAATTTATTAAATGAAATCC
ATTTAAAATTAATTCATCGATTATGATAAGAATAATACAATAAAAATAAA
TATATAAACATTAAATACATAATTAATATCCACATTTCCGTCAAATAATA
TTCCCCGATACTTAAAAATTAATAATTTCATTTTCTATAATCCATACCTC
GTACATAATTATGTATATATTTATAACTTAACTCAATAAAAATTTACAAT
TTATAATATTGTAAATAAATGTGCCAATATTATACTTCTAGTTTAAAATT
TAATTTTTAACAACCCTTTGCTGGTTTCAATGAATGAATGAACCAATACT
TATTATAAAATACTATAAAATAAACATCTTCTATACTTAATAAATACAAT
TTAATAAAACAGTTCATAATTTATCGTTTCAACAGAACTTGAAGGTCCAG
AGACTGAAACTGCAGAAAATAAATTACCAGAATATAATGATTTAATATCT
GATAATGTTTTAATAAAAAGTGAACAAAATTTTGAAAACAATATTGACAA
TTTACCATCAACTTTAGATTATAAAGACCCTAGTTCATGGCCAAATTTAC
GTTTAGATTCACATAGGTCATGCACAATAAAATCA
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Coding sequence (CDS) from alignment at scaffold_4507:1..1235-

>jg1080.t1 ID=jg1080.t1|Name=jg1080.t1|organism=Eriosoma lanigerum|type=CDS|length=288bp|location=Sequence derived from alignment at scaffold_4507:1..1235- (Eriosoma lanigerum)
ATGTACGTACACTCCAAATTACTGCAAAAGTGGCGGAAAAGTACGTATCT
GTCTGCTAAAGTCCAAATAAATCGGTTTATATCAAGTAAACTTGAAGGTC
CAGAGACTGAAACTGCAGAAAATAAATTACCAGAATATAATGATTTAATA
TCTGATAATGTTTTAATAAAAAGTGAACAAAATTTTGAAAACAATATTGA
CAATTTACCATCAACTTTAGATTATAAAGACCCTAGTTCATGGCCAAATT
TACGTTTAGATTCACATAGGTCATGCACAATAAAATCA
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