rna-XM_026949029.1 (mRNA) Rhopalosiphum maidis

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	XM_026949029.1
Unique Name	rna-XM_026949029.1
Type	mRNA
Organism	Rhopalosiphum maidis (Corn aphid)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NC_040877.1	contig	NC_040877.1:19639776..19642490 + View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Rhopalosiphum maidis OGS1.0	2020-07-06 .371709

Properties


Property Name	Value
Gbkey	mRNA
Gene	LOC113548247
Model evidence	Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Product	uncharacterized LOC113548247, transcript variant X1
Transcript id	XM_026949029.1

Cross References

External references for this mRNA


Database	Accession
GeneID	113548247
Genbank	XM_026949029.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
LOC113548247	gene-LOC113548247	Rhopalosiphum maidis	gene	NC_040877.1 19639773..19642490 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
XM_026949029.1	XP_026804830.1	Rhopalosiphum maidis	polypeptide	NC_040877.1 19641034..19642483 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon-XM_026949029.1-1	exon-XM_026949029.1-1	Rhopalosiphum maidis	exon	NC_040877.1 19639776..19640027 +
exon-XM_026949029.1-2	exon-XM_026949029.1-2	Rhopalosiphum maidis	exon	NC_040877.1 19641009..19641158 +
exon-XM_026949029.1-3	exon-XM_026949029.1-3	Rhopalosiphum maidis	exon	NC_040877.1 19642300..19642490 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
XP_026804830.1	cds-XP_026804830.1	Rhopalosiphum maidis	CDS	NC_040877.1 19641034..19641158 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NC_040877.1:19639776..19642490+
coding sequence from alignment at NC_040877.1:19639776..19642490+

spliced messenger RNA

>rna-XM_026949029.1 ID=rna-XM_026949029.1|Name=XM_026949029.1|organism=Rhopalosiphum maidis|type=mRNA|length=593bp|location=Sequence derived from alignment at NC_040877.1:19639776..19642490+ (Rhopalosiphum maidis)|Notes=Excludes all bases but those of type(s): exon.  
ATATAGTaatgttacaattattatattattgcataaattattataatagt
tgagtttcaatttttaatattataatttaaatatttctattgtgCTTtgt
gcttattataataaataatttattttagacaaaACTATTTCTACGTCTTA
ATTCACGATTTGCTATTACTGAATTTGAGCTAAGTAATAGCTACTAGCAC
GACTTAAATTCGTTCTTCCAAGAATCCAGGCTCAATTTATAATCACTCGT
TGatTTCCAACTTAATCGCTCTCTTAAATGgcctttgaaattaaaaattc
tggtAAGCCAAGACAAGTGAGGGGTACTACTGCATACAAATATCGAAATT
TGTATGCGTTTGGTGTATTGGCTGTCAGTGGACTTTCTTGGTGGCTGTTT
GAaCAATTACCATCTACAAAGatactaaatgaaaaaatcaaaaatggttA
TTGGGATCGTACACCTGAAGAAAATTATAGATTAGAAatgatcaaaaaaa
atttaaatcctgaaataaaaaatctgaAGGATAGAAAAGATGAAATTATG
TCGAAAAAAGAAGATTTTATACcaataaagatataatattgta

protein sequence of XM_026949029.1

>XP_026804830.1 ID=XP_026804830.1|Name=XM_026949029.1|organism=Rhopalosiphum maidis|type=polypeptide|length=102bp
MAFEIKNSGKPRQVRGTTAYKYRNLYAFGVLAVSGLSWWLFEQLPSTKIL
NEKIKNGYWDRTPEENYRLEMIKKNLNPEIKNLKDRKDEIMSKKEDFIPI
KI

mRNA from alignment at NC_040877.1:19639776..19642490+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-XM_026949029.1 ID=rna-XM_026949029.1|Name=XM_026949029.1|organism=Rhopalosiphum maidis|type=mRNA|length=2715bp|location=Sequence derived from alignment at NC_040877.1:19639776..19642490+ (Rhopalosiphum maidis)
ATATAGTaatgttacaattattatattattgcataaattattataatagt
tgagtttcaatttttaatattataatttaaatatttctattgtgCTTtgt
gcttattataataaataatttattttagacaaaACTATTTCTACGTCTTA
ATTCACGATTTGCTATTACTGAATTTGAGCTAAGTAATAGCTACTAGCAC
GACTTAAATTCGTTCTTCCAAGAATCCAGGCTCAATTTATAATCACTCGT
TGGTACGTTTCTTAAttcactttatttatttttaaaaacctaaaacacaa
tttattctTTAGTATCGGTAAGTACTAAGTAAATCAAATCTGttcgttaa
aatattgtaggtTTCCACATGGTTAAAACATacgaaatacatatatattt
attatatttaatgtagaataatactttgtatatcattttatcattttttg
aattgttCCAATATTAGGTTCAAATATTTCTTGTTTGTATGTACCAGTGG
CGTAGTTATGAGGAGGGAGCAGGGGGCTCTTGCCCTCCCCAACCTCCTct
gaaaatttacttttaaaaaaactgtatattgtagttgtattatattaagt
tctatattgtatcatttattttattattatcatttactgaaattaatttc
taattactACCGATATACTTGTGTATTTgactttatataattcatgatta
ttatgaacaattttgaaattttgaccaCTCCCCTACTTAAATTCCTAGCT
ATGCTACTGGTATGTACCAtatgatttacaataaaacattgtacagtttt
attgttaaaatttataaatttagatatcAATACTTAAAgtaatatgaaaa
ttcaaGATCGATTAATCTTTTCAAAAGttgatacttaattttataaaatt
ttaatttatatttctattattaatataaatcgagatataaatatatctaa
ataattaatgcttacttcaataatatctcacttattcaataaaatattaa
aattattattctattattaactacattaaaaaaaatgtatatatattaat
aaaattattaattataataaaaaaccaaatgTATCTAACTACgtagtaaa
caatataaaagtgataattacaattttaatgaattcaaattgaaCTAATG
AAGtgattagtaaattataaattattttaaaaatattcataaattatcta
aatcttatattattttgttattattatttgaagatTTCCAACTTAATCGC
TCTCTTAAATGgcctttgaaattaaaaattctggtAAGCCAAGACAAGTG
AGGGGTACTACTGCATACAAATATCGAAATTTGTATGCGTTTGGTGTATT
GGCTGTCAGTGGACTTTCTTGGTGGCTGTTTGAGTgagtttttgtatatt
tatataatatttgattaattttgaatttgagaGCTTACATtacattagat
attttatcaattactattctaatttaaaatgttaatgcaaattaacaaaa
aattaaactactcttcaaatattcattaatcatacattacaaatttaaaa
aattttactatagattatgaaattaaaacatttaaaaataatagctaagt
aaattgttaattttctaaaaacttatattctttgaaataataaatattat
ttactgtaaaaaatagcaaataaatcatagaaaaataaaccataattaCT
TTTACTACATTAAAGAGTTATTGcaaagatattaaatataatttatacat
tttttatataataatatataatagtaataattattatgtattttaattgt
atactattaaagtatttttcagtaaatgtacatattataagatttcaatg
tttattgacatgtaaatattatatattctgttttttgcattatttatttt
ttctttagcgCCTATGTGCAACATAAACAAATCTCATTCAAAAGTAGAAg
agtaaaagttatttatctaaacaataatatttttgaagataTGACATATT
Agtttatcttaatatattaagaaaaatatcctttttaaatttacaaaatt
tcttttttttattaaaattgaatattattaataataaaatataaaactga
ttTATCGCACcttctaaaattgtatttcctatagtttttataatagatta
agttataataattatattcttaggACTACCtactcaaatattatataaaa
caattttacatgAATCTATTTCATTTATGTTGTGTGTTGgtctaatgatt
aaaaaaagaaactaatacttaaattatttaatcatataacaaaatattgt
tgttaacaTTATGAATTGTGATCATTGtgtataactttttatcaTAGAAT
AAGACTGATCACTATAGATAAATGTGTAGAATATATTCTgtgattaaaca
aaaattatatattttcatttcaattttcataattttttttttttttatac
cttataccttataatagcagctataatatatgtattaaagaaTTGCATAT
GTAATcattctttttcttttatagaCAATTACCATCTACAAAGatactaa
atgaaaaaatcaaaaatggttATTGGGATCGTACACCTGAAGAAAATTAT
AGATTAGAAatgatcaaaaaaaatttaaatcctgaaataaaaaatctgaA
GGATAGAAAAGATGAAATTATGTCGAAAAAAGAAGATTTTATACcaataa
agatataatattgta

Coding sequence (CDS) from alignment at NC_040877.1:19639776..19642490+

>rna-XM_026949029.1 ID=rna-XM_026949029.1|Name=XM_026949029.1|organism=Rhopalosiphum maidis|type=CDS|length=309bp|location=Sequence derived from alignment at NC_040877.1:19639776..19642490+ (Rhopalosiphum maidis)
ATGgcctttgaaattaaaaattctggtAAGCCAAGACAAGTGAGGGGTAC
TACTGCATACAAATATCGAAATTTGTATGCGTTTGGTGTATTGGCTGTCA
GTGGACTTTCTTGGTGGCTGTTTGAaCAATTACCATCTACAAAGatacta
aatgaaaaaatcaaaaatggttATTGGGATCGTACACCTGAAGAAAATTA
TAGATTAGAAatgatcaaaaaaaatttaaatcctgaaataaaaaatctga
AGGATAGAAAAGATGAAATTATGTCGAAAAAAGAAGATTTTATACcaata
aagatataa