SFRICE020481-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Full name	SFRICE020481
eAED	0.15
QI	0\|0\|0\|1\|1\|1\|7\|0\|464
AED	0.15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
SFRICE020481	SFRICE020481	Spodoptera frugiperda rice	gene	SFRU_RICE_010137 433..4071 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE020481-RA-exon	SFRICE020481-RA-exon-1	Spodoptera frugiperda rice	exon	SFRU_RICE_010137 433..682 +
SFRICE020481-RA-exon	SFRICE020481-RA-exon-2	Spodoptera frugiperda rice	exon	SFRU_RICE_010137 806..1001 +
SFRICE020481-RA-exon	SFRICE020481-RA-exon-3	Spodoptera frugiperda rice	exon	SFRU_RICE_010137 1460..1622 +
SFRICE020481-RA-exon	SFRICE020481-RA-exon-4	Spodoptera frugiperda rice	exon	SFRU_RICE_010137 1895..2089 +
SFRICE020481-RA-exon	SFRICE020481-RA-exon-5	Spodoptera frugiperda rice	exon	SFRU_RICE_010137 2543..2752 +
SFRICE020481-RA-exon	SFRICE020481-RA-exon-6	Spodoptera frugiperda rice	exon	SFRU_RICE_010137 3211..3357 +
SFRICE020481-RA-exon	SFRICE020481-RA-exon-7	Spodoptera frugiperda rice	exon	SFRU_RICE_010137 3838..4071 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE020481-RA-CDS	SFRICE020481-RA-CDS-1	Spodoptera frugiperda rice	CDS	SFRU_RICE_010137 433..682 +
SFRICE020481-RA-CDS	SFRICE020481-RA-CDS-2	Spodoptera frugiperda rice	CDS	SFRU_RICE_010137 806..1001 +
SFRICE020481-RA-CDS	SFRICE020481-RA-CDS-3	Spodoptera frugiperda rice	CDS	SFRU_RICE_010137 1460..1622 +
SFRICE020481-RA-CDS	SFRICE020481-RA-CDS-4	Spodoptera frugiperda rice	CDS	SFRU_RICE_010137 1895..2089 +
SFRICE020481-RA-CDS	SFRICE020481-RA-CDS-5	Spodoptera frugiperda rice	CDS	SFRU_RICE_010137 2543..2752 +
SFRICE020481-RA-CDS	SFRICE020481-RA-CDS-6	Spodoptera frugiperda rice	CDS	SFRU_RICE_010137 3211..3357 +
SFRICE020481-RA-CDS	SFRICE020481-RA-CDS-7	Spodoptera frugiperda rice	CDS	SFRU_RICE_010137 3838..4071 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE020481-RA	SFRICE020481-PA	Spodoptera frugiperda rice	polypeptide	SFRU_RICE_010137 433..4071 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at SFRU_RICE_010137:433..4071+
coding sequence from alignment at SFRU_RICE_010137:433..4071+

spliced messenger RNA

>SFRICE020481-RA ID=SFRICE020481-RA|Name=SFRICE020481-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1395bp|location=Sequence derived from alignment at SFRU_RICE_010137:433..4071+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
GCGACAGGCACACGTATAGGTGCTTTAATGCAGGCCACAGCCACGATAGT
GATTGGCATCATGCTGTCGATGTACTTCACGTGGAAGATGACACTGGTCT
CCCTGATCTCGGTGCCGGCGGTCATCGGTAGCGTGGTAATGGAAGGCAGA
GTGCTATCTGTCGGCCTACAACTGGTTCGCGAAGCTTCCTACAGAGCAAC
CACAATTGCTACTGAAGCCATTACCAATATCAAGACCGTCGCCGCTTTCT
GTGGTGAAGAGGCTGTGATAAAGCGCTACCACGATGCGTTTGTGGGCGGT
CGAGCGATGGCACGCAAGAGTCTGCGCTGGCGCGGGACTGTGTTCTCGTT
CGGGCAGACTGCACCCGTCGCGGGGTATGCCCTGTCTCTATGGTACGGTG
GTGTACTCGTCGCCGAAGGAGAGATACACTACAAGACCGTTATTAAGGTA
TCTGAAGCTCTGATCTTCGGCGCTTGGATGATGGGCCAGGCGTTAGCGTT
CGCGCCCAACTTCGGCGCGGCGGTGAGTGCCGCTGGCCGTGTTATGACGC
TGCTCGCTCGGAAACCACGAGTGTGTGACACGGTTTCACCTAGTGTGCCA
GTGGATTACGTGGCCCAGGGTAAAATTGAGTACAAAAACGTAAAGTTCCG
ATACCCAACGCGACGCGAAGTAGAAGTGCTACGTGGACTATCAGTACTTA
TCCCGTTCGGCAAACGAGTGGCTTTCGTGGGACCTAGCGGCTGCGGGAAG
TCCACTCTCATCCAACTTATACAGCGACTTTATGACCCTGAAGAAGGCAA
TGTGTATATGGATGATTACAATGTAGTATCGGATATGCGTCTGCAAACAT
TACGTGCGAACCTTGGCATCGTATCTCAAGAACCGGTGCTTTTCGATAGA
ACGATCGCAGAGAATATTGCTTATGGAGACAACAGGCGCAATGTCACCAT
TGAAGAAATCGTCTCCGCGGCCAAACAGGCCAACGTTCACACCTTTATAT
CCGCATTGCCTAACGCATACAATACACGCATCGGCGCCCGCGCATCCCAG
CTGTCCGGAGGTCAGAAACAGCGAATCGCAATAGCGCGGGCACTCGTGCG
CAATCCACGCGTGCTACTGTTGGACGAGGCAACGTCAGCTCTAGATACAC
ACAGCGAAAAGGTAGTACAAGAAGCTCTGGACAGAGCCAGCGAAGGCCGT
ACGAGTCTCATCATAGCCCATCGTCTATCCACAATACAAACAGCAGACAT
GATCGTGGTTATAGCTAAAGGAGTGGTCGCCGAAACCGGTACGCACAGAG
AACTTCTAGAAAAGAACGGCATATACGCAAGACTTTATGAACTGCAATGC
GGCATACCGGAAGAAATTGAAGAAACGGCAGATGGCGACGTGTAG

protein sequence of SFRICE020481-RA

>SFRICE020481-PA ID=SFRICE020481-PA|Name=SFRICE020481-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=465bp
ATGTRIGALMQATATIVIGIMLSMYFTWKMTLVSLISVPAVIGSVVMEGR
VLSVGLQLVREASYRATTIATEAITNIKTVAAFCGEEAVIKRYHDAFVGG
RAMARKSLRWRGTVFSFGQTAPVAGYALSLWYGGVLVAEGEIHYKTVIKV
SEALIFGAWMMGQALAFAPNFGAAVSAAGRVMTLLARKPRVCDTVSPSVP
VDYVAQGKIEYKNVKFRYPTRREVEVLRGLSVLIPFGKRVAFVGPSGCGK
STLIQLIQRLYDPEEGNVYMDDYNVVSDMRLQTLRANLGIVSQEPVLFDR
TIAENIAYGDNRRNVTIEEIVSAAKQANVHTFISALPNAYNTRIGARASQ
LSGGQKQRIAIARALVRNPRVLLLDEATSALDTHSEKVVQEALDRASEGR
TSLIIAHRLSTIQTADMIVVIAKGVVAETGTHRELLEKNGIYARLYELQC
GIPEEIEETADGDV.

mRNA from alignment at SFRU_RICE_010137:433..4071+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>SFRICE020481-RA ID=SFRICE020481-RA|Name=SFRICE020481-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=3639bp|location=Sequence derived from alignment at SFRU_RICE_010137:433..4071+ (Spodoptera frugiperda rice)
GCGACAGGCACACGTATAGGTGCTTTAATGCAGGCCACAGCCACGATAGT
GATTGGCATCATGCTGTCGATGTACTTCACGTGGAAGATGACACTGGTCT
CCCTGATCTCGGTGCCGGCGGTCATCGGTAGCGTGGTAATGGAAGGCAGA
GTGCTATCTGTCGGCCTACAACTGGTTCGCGAAGCTTCCTACAGAGCAAC
CACAATTGCTACTGAAGCCATTACCAATATCAAGACCGTCGCCGCTTTCT
GTAAGTGACTACACTCAAAGAAACGTTGATAGAGCCATAAGCTCAATTGT
TTTTAGTGCCATTGTCAACATGAAATTTTCTTGACATGACATTCTTATCT
ATAAAAGGGACTCTTTTGCCAAGGTGGTGAAGAGGCTGTGATAAAGCGCT
ACCACGATGCGTTTGTGGGCGGTCGAGCGATGGCACGCAAGAGTCTGCGC
TGGCGCGGGACTGTGTTCTCGTTCGGGCAGACTGCACCCGTCGCGGGGTA
TGCCCTGTCTCTATGGTACGGTGGTGTACTCGTCGCCGAAGGAGAGATAC
ACTACAAGACCGTTATTAAGTAAGTTTCCCTCAGTATATTAACTTAATAA
GTTCTTCCGTTTGTGTTGCGTCACTCTCTCTGTATNNNNNNNNNNNNNNN
NNNNNNNACAGACAGACTATTATTTATTTCTTTATTTGTTGACGTATCAA
AGTACCTCTTTATGGTTTAATTGAAATAAATAATAAAATATAAATATTAA
ATGTGCCCGGTATATGGCAATAGTCTCACCCCCTATTACGTGGGACTTAT
AGCACATATGGTGAAAACTGGGTGTACATTGTATAGTGGCATCACGTGCC
GTAATGTGCACCTCTGCGTACCCCTTCGGGGATGAGTGACGTTGCGTTGC
ATTGAAATAAATAATTTGACTTTGACTTTTCTGGATTCTATTCTGTTTCA
ACGTTTGATAGAAGCCGGATCATTTATGCCAAAGCCGAAGCGTGGCGTAC
ATGTTTTAAAGGAGAAATGGGTTTCAGGGTATCTGAAGCTCTGATCTTCG
GCGCTTGGATGATGGGCCAGGCGTTAGCGTTCGCGCCCAACTTCGGCGCG
GCGGTGAGTGCCGCTGGCCGTGTTATGACGCTGCTCGCTCGGAAACCACG
AGTGTGTGACACGGTTTCACCTAGTGTGCCAGTGGATTACGTAAGTGCTA
AATTACATTCTTATCAATATTATATTCTAATAGCTCTCATATTTCCTTAC
TTGATGTTTTTGGTACTTTGTGTAATGTTCAAAAAAATAAGATTGATAAT
ATAAAATAGAATTTATGTATGACTTACTTAATATCTGAAGGAAAATGAGG
CGTTGTGCAACTACTATCAGTTGCACAACGCATCATTTTACCATTCCCTC
GCGAAGATAGATCTCTAAGCATTTTATCAACAACCTTTTATATCGTTAAT
TCTTATTTTTAGGTGGCCCAGGGTAAAATTGAGTACAAAAACGTAAAGTT
CCGATACCCAACGCGACGCGAAGTAGAAGTGCTACGTGGACTATCAGTAC
TTATCCCGTTCGGCAAACGAGTGGCTTTCGTGGGACCTAGCGGCTGCGGG
AAGTCCACTCTCATCCAACTTATACAGCGACTTTATGACCCTGAAGAAGG
CAATGTGGTAAGTCCTAACACCAGCACTTTTTTTATTTATATTACTTTTT
GCAACTTTATCTTACAAGGGTCGGCTCAATGCAATGGATTTTCTTGCTAA
CCAACCTTTAGGTGATGCGGTGAGAATGTGGTCTGTACAATAACGTCTGA
TATTCCCCAAAAGCAAGTGTCTGTTATGTTTCGAGGTCATTGGTGGAGCT
TACTATGATGGTGATGATGTTTTTTTCAAAAGGTGAATGACCACGACTAT
TTTGTTAAGAATGAATTGAACATCCCAGTCCCATGTTGGGTGCCAATGAC
AATAAAATATGATTACCAATTTACCACGTTTTAACTAAAATATGTTTTAT
TGTTCTTATCATACTTCTGGACTTACTTCATCTCGTATGTAACCGTAGAG
GTATCAGATTAGGTACCTATATAAGTACATTTTCAATCAGTCAATTTCTA
TTTATTGCAGTATATGGATGATTACAATGTAGTATCGGATATGCGTCTGC
AAACATTACGTGCGAACCTTGGCATCGTATCTCAAGAACCGGTGCTTTTC
GATAGAACGATCGCAGAGAATATTGCTTATGGAGACAACAGGCGCAATGT
CACCATTGAAGAAATCGTCTCCGCGGCCAAACAGGCCAACGTTCACACCT
TTATATCCGCATTGCCTAACGTAAGTACCTAGTTTACCAAATATTCTTTT
TTTTCAGTGTTCAGCGTCGTAAGATTTGCCATGTGGTGTCAGCAGAGTAG
AATGTATGTAATCCCAGCGCCGGATGAAGCCGACGCGGAGTCCATAGCTG
ATGTGCACAGGCGCGGGGCATTTTCTGCCTCCTGCTCCATGGCTAATCCG
GCACTGTGTAACTCCCACTCCTGCTTATCCAGCGGGTGTCGAAATAAAAG
CCGATTAAAGTACTAAGATTACATTTTGACAGACCGTTTTATTTCAGTAA
AAATCCAAATAAGTTCTATTTTCAATCTGGGGATAGAAACCGATACCATT
ATATCTAGACCAGTTGATTGAAGCTTCCATGCTCAATCGAATCGTTTAAA
AGATATTACTATTGTTTTTTTTTAAGTTAGTTACATACTTTGTACCTACA
TAGTAATTCACCGTCTACTGTTATAAAGGCATACAATACACGCATCGGCG
CCCGCGCATCCCAGCTGTCCGGAGGTCAGAAACAGCGAATCGCAATAGCG
CGGGCACTCGTGCGCAATCCACGCGTGCTACTGTTGGACGAGGCAACGTC
AGCTCTAGATACACACAGCGAAAAGGTAAGTTAAAGTATCGAGAATAAAT
TCCAATATGAAGTCAATAATTATTATGATACATACGGACTGACAGCAAGC
AGACGCTCTCACATTTGATACGATACGAATACGCTTCGGCACGAAAGGGT
CGGTTCGATCAGAGTTATACCACGGACTCACAGAAAACCAGCAGGAAACA
ATGTTCGTGTTATGTTTTGCCATGTAAGTGTGAGGCATGTAAGTTATCAG
AGGCCTAATTCCTCTTAAAAGTCCGGCCACGCATTTGTAACTATTCTGCT
GTTAGATATGGGTTACCATTGGCAGCGCCGATTGCTTACTATCAGGTGAT
CCCATAAAAAATACCACTAAGCAGTCAAATAAAGTCAGGGTTAATGTTTA
CAAACAGAGCGATTAGGTACCTGACTAGCTGTATAGATAATACAAGTCTG
TATACATAGGTCATTTAGTTACATTTTTATTACTAAGTGCGCCTCCTTTT
TACAGGTAGTACAAGAAGCTCTGGACAGAGCCAGCGAAGGCCGTACGAGT
CTCATCATAGCCCATCGTCTATCCACAATACAAACAGCAGACATGATCGT
GGTTATAGCTAAAGGAGTGGTCGCCGAAACCGGTACGCACAGAGAACTTC
TAGAAAAGAACGGCATATACGCAAGACTTTATGAACTGCAATGCGGCATA
CCGGAAGAAATTGAAGAAACGGCAGATGGCGACGTGTAG

Coding sequence (CDS) from alignment at SFRU_RICE_010137:433..4071+

>SFRICE020481-RA ID=SFRICE020481-RA|Name=SFRICE020481-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1395bp|location=Sequence derived from alignment at SFRU_RICE_010137:433..4071+ (Spodoptera frugiperda rice)
GCGACAGGCACACGTATAGGTGCTTTAATGCAGGCCACAGCCACGATAGT
GATTGGCATCATGCTGTCGATGTACTTCACGTGGAAGATGACACTGGTCT
CCCTGATCTCGGTGCCGGCGGTCATCGGTAGCGTGGTAATGGAAGGCAGA
GTGCTATCTGTCGGCCTACAACTGGTTCGCGAAGCTTCCTACAGAGCAAC
CACAATTGCTACTGAAGCCATTACCAATATCAAGACCGTCGCCGCTTTCT
GTGGTGAAGAGGCTGTGATAAAGCGCTACCACGATGCGTTTGTGGGCGGT
CGAGCGATGGCACGCAAGAGTCTGCGCTGGCGCGGGACTGTGTTCTCGTT
CGGGCAGACTGCACCCGTCGCGGGGTATGCCCTGTCTCTATGGTACGGTG
GTGTACTCGTCGCCGAAGGAGAGATACACTACAAGACCGTTATTAAGGTA
TCTGAAGCTCTGATCTTCGGCGCTTGGATGATGGGCCAGGCGTTAGCGTT
CGCGCCCAACTTCGGCGCGGCGGTGAGTGCCGCTGGCCGTGTTATGACGC
TGCTCGCTCGGAAACCACGAGTGTGTGACACGGTTTCACCTAGTGTGCCA
GTGGATTACGTGGCCCAGGGTAAAATTGAGTACAAAAACGTAAAGTTCCG
ATACCCAACGCGACGCGAAGTAGAAGTGCTACGTGGACTATCAGTACTTA
TCCCGTTCGGCAAACGAGTGGCTTTCGTGGGACCTAGCGGCTGCGGGAAG
TCCACTCTCATCCAACTTATACAGCGACTTTATGACCCTGAAGAAGGCAA
TGTGTATATGGATGATTACAATGTAGTATCGGATATGCGTCTGCAAACAT
TACGTGCGAACCTTGGCATCGTATCTCAAGAACCGGTGCTTTTCGATAGA
ACGATCGCAGAGAATATTGCTTATGGAGACAACAGGCGCAATGTCACCAT
TGAAGAAATCGTCTCCGCGGCCAAACAGGCCAACGTTCACACCTTTATAT
CCGCATTGCCTAACGCATACAATACACGCATCGGCGCCCGCGCATCCCAG
CTGTCCGGAGGTCAGAAACAGCGAATCGCAATAGCGCGGGCACTCGTGCG
CAATCCACGCGTGCTACTGTTGGACGAGGCAACGTCAGCTCTAGATACAC
ACAGCGAAAAGGTAGTACAAGAAGCTCTGGACAGAGCCAGCGAAGGCCGT
ACGAGTCTCATCATAGCCCATCGTCTATCCACAATACAAACAGCAGACAT
GATCGTGGTTATAGCTAAAGGAGTGGTCGCCGAAACCGGTACGCACAGAG
AACTTCTAGAAAAGAACGGCATATACGCAAGACTTTATGAACTGCAATGC
GGCATACCGGAAGAAATTGAAGAAACGGCAGATGGCGACGTGTAG