SFRICE006035-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE006035-RA
Unique NameSFRICE006035-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_002768contigSFRU_RICE_002768:42755..45476 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE006035
eAED0.42
QI84|1|1|1|1|1|3|452|538
AED0.42
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE006035SFRICE006035Spodoptera frugiperda ricegeneSFRU_RICE_002768 42755..45476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE006035-RASFRICE006035-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_002768 42839..45024 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE006035-RA-exonSFRICE006035-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_002768 42755..42967 +
SFRICE006035-RA-exonSFRICE006035-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_002768 43190..44496 +
SFRICE006035-RA-exonSFRICE006035-RA-exon-3Spodoptera frugiperda riceexonSFRU_RICE_002768 44844..45476 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE006035-RA-five_prime_UTRSFRICE006035-RA-five_prime_UTR-4Spodoptera frugiperda ricefive_prime_UTRSFRU_RICE_002768 42755..42838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE006035-RA-CDSSFRICE006035-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_002768 42839..42967 +
SFRICE006035-RA-CDSSFRICE006035-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_002768 43190..44496 +
SFRICE006035-RA-CDSSFRICE006035-RA-CDS-3Spodoptera frugiperda riceCDSSFRU_RICE_002768 44844..45024 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE006035-RA-three_prime_UTRSFRICE006035-RA-three_prime_UTR-8Spodoptera frugiperda ricethree_prime_UTRSFRU_RICE_002768 45025..45476 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE006035-RA ID=SFRICE006035-RA|Name=SFRICE006035-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2153bp|location=Sequence derived from alignment at SFRU_RICE_002768:42755..45476+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
TATATTTATGGAGCGGCGTCGTGTATCGTTTCAGTCATTATTATTTTGCC
GCGGTGTACACTTGTGAACATAAGTGTGGAGAACATGGTGCAAGTGAGAG
TGAGCGATGGTTTGCTCGAGGGGGAACAGGTCCAGAATGAGTTCGGAGGG
TCGTTCTACAGGTTCAGAGGAATACCGTACGCCCAGCCACCTCTTGGAGA
TCTCCGGTTTAAGGCACCGCAACCAATTAAACCATGGCAAGGTGTACGGC
AAGCCAAACAATTTGGCCCAGTGTGTTACCAGTTCAACCCCACCAACCCT
GGACTATCAAACATGAGTGAAGACTGCTTATACGTGAATGTTTATACTCC
AGACGTTAAGCCTCAAACCCCTCTACCTGTAATGGTTTGGATCCACGGAG
GAGGATACGTATGGGGAAGTGGCAATGACGACCTCTACGGCCCAGAATTT
CTAATCAGACATAATGTAGTTCTAGTCACATTCAACTACAGACTCGAAGT
TCTCGGCTTTCTTTGCCTTGACACTGCAGACGTTCCAGGCAATGCTGGCA
TGAAAGATCAAGTAGCAGCCCTCAGATGGGTCAAAAGAAACATTGCCAAC
TTTGGAGGCAACCCTGACAACATCACAATATTTGGTGAAAGTGCCGGTGC
TGGTAGTGTTTCACATCATTTAATATCCCCAATGTCAAAGGGCCTCTTCA
ACAGAGCAATCCCACAGAGTGGAGCCACCACATGTTTTTGGGCTACAGCA
TTCGAACCAAAAGAAAAAGCCATACTTCTCGCTAAACAACTGGGTTTTCA
TTCAGAGGACGAAAAAGAACTATATGAATTCTTCAAAAAACAGCCGTGTG
AAAATCTGGTCAACTTAAAATTACAAGTAACGACATCACAGAAGTCTTAT
GAGATTCATTTCAGTATTGCAAATGAGAAAGATTTTGGACAGGAAAGATT
TTTCTATGGCGATTTCGTCGACGCAATGAAAAACAATTTGCAGGAAGGTG
TAGACATTATGACGGGTTACACAAAGGACGAGTGTACGATATCGATATCC
ATCGGTGGACCACTGGAAGACATTCTTGCAAAAGCTCAGAGATACCGGGA
ATTTTTCGCTCCCAAACTGATACAGAACTTCGGGACGATAACTGACCAGT
TAGAAGCTGCACGGAAGCTACAAAAGTTTTATTTCAAAAACGAGAGAGTA
TCGAAAGACAATATTGATACTTTAATGAAATACATAAGTGTTGATATGTT
CGTCCATGGCGTGATGTTGGCTGCGAAGTTCTATTCAAGGAAGAATAAAG
TTTACTTTTACAAATTCAATTGTTACTCAGAGAGGAATGTCTTCACGGAT
GCCTTTTGCGTCGGCCATCTGAACGAAGGCCGGGAAGTAGTAAGTCATGC
GGATGATTTGGCATATCTCTTCCCAGTGAAACTTTTCACGCAAAAAGTTG
ATAAAACATCGGACACATTCAAACTGATTGACAGGGTCACTAAACTTTGG
ACAAACTTCGCCAAATACGGAAACCCGACTCCAGATAACAGCTTAGGAGT
GAAATGGCTCCCATACACCTTAGCAGCTCAGGACTATATGGACATTGGTG
ACAAGCTGATCCCTGGTCATTCACCAGACCAGGAAGAACTTGACTTCTGG
GAGTCTATATTTCAACAGTACCTGCCTAAATTCAGTATGTTAAACAAATA
ATTCACCACAATAGTGCCAACACAACAAGCTATACCAAACTGTTGTTAAC
AGATTTTCAAATCTATTTCTATGATGATAAAGTTGAAAATGTTTTGGGTT
AGTTTCATATGCTTGCGTCTTGTGTAGTGCTAAGAACTAATTTTGTTTTT
GTTTTATAGTAAGAAAAGTCTTTACTTGATAGGATTTGTTAAAAGACTAA
CTCTAATTAATATAAATATCTATAATATAATTAATATATTGTTACAAGTA
AATATGTTGAAGTAAGTGTTACGTACCATGTAATTTCAAATAATATAATA
TGTTATCTTAATGACTAACATAAATTAATAAAGTGGAATACGTCAATAGA
TCATTCATTATAGTATTATCTACAATAATAAAATTTATTGAATGTATACC
ATCAAAAGATATAACATAGAATTCAAATTTACTTGATTTTATTTTACATG
CAT
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protein sequence of SFRICE006035-RA

>SFRICE006035-PA ID=SFRICE006035-PA|Name=SFRICE006035-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=539bp
MVQVRVSDGLLEGEQVQNEFGGSFYRFRGIPYAQPPLGDLRFKAPQPIKP
WQGVRQAKQFGPVCYQFNPTNPGLSNMSEDCLYVNVYTPDVKPQTPLPVM
VWIHGGGYVWGSGNDDLYGPEFLIRHNVVLVTFNYRLEVLGFLCLDTADV
PGNAGMKDQVAALRWVKRNIANFGGNPDNITIFGESAGAGSVSHHLISPM
SKGLFNRAIPQSGATTCFWATAFEPKEKAILLAKQLGFHSEDEKELYEFF
KKQPCENLVNLKLQVTTSQKSYEIHFSIANEKDFGQERFFYGDFVDAMKN
NLQEGVDIMTGYTKDECTISISIGGPLEDILAKAQRYREFFAPKLIQNFG
TITDQLEAARKLQKFYFKNERVSKDNIDTLMKYISVDMFVHGVMLAAKFY
SRKNKVYFYKFNCYSERNVFTDAFCVGHLNEGREVVSHADDLAYLFPVKL
FTQKVDKTSDTFKLIDRVTKLWTNFAKYGNPTPDNSLGVKWLPYTLAAQD
YMDIGDKLIPGHSPDQEELDFWESIFQQYLPKFSMLNK.
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mRNA from alignment at SFRU_RICE_002768:42755..45476+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE006035-RA ID=SFRICE006035-RA|Name=SFRICE006035-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2722bp|location=Sequence derived from alignment at SFRU_RICE_002768:42755..45476+ (Spodoptera frugiperda rice)
TATATTTATGGAGCGGCGTCGTGTATCGTTTCAGTCATTATTATTTTGCC
GCGGTGTACACTTGTGAACATAAGTGTGGAGAACATGGTGCAAGTGAGAG
TGAGCGATGGTTTGCTCGAGGGGGAACAGGTCCAGAATGAGTTCGGAGGG
TCGTTCTACAGGTTCAGAGGAATACCGTACGCCCAGCCACCTCTTGGAGA
TCTCCGGTTTAAGGTAGGAATACTGAAATATTCGCAGTTATTTTTTTTTT
CGCAAAAAAGTGAATAAAAAATTTAATTGTTCTCTCAATACTTTTGAAAT
TTGTGAAAATAAAGAAAAGTCTTAATCATTATAACTTCAATTAGACCAAT
AATAAGGCCCTTTAGAAAGTCAACCAATATTTTCTGGTGATAAAAAAATA
CGAATTGAAGCCTAAGCAATATAAAATTGTTACAGGCACCGCAACCAATT
AAACCATGGCAAGGTGTACGGCAAGCCAAACAATTTGGCCCAGTGTGTTA
CCAGTTCAACCCCACCAACCCTGGACTATCAAACATGAGTGAAGACTGCT
TATACGTGAATGTTTATACTCCAGACGTTAAGCCTCAAACCCCTCTACCT
GTAATGGTTTGGATCCACGGAGGAGGATACGTATGGGGAAGTGGCAATGA
CGACCTCTACGGCCCAGAATTTCTAATCAGACATAATGTAGTTCTAGTCA
CATTCAACTACAGACTCGAAGTTCTCGGCTTTCTTTGCCTTGACACTGCA
GACGTTCCAGGCAATGCTGGCATGAAAGATCAAGTAGCAGCCCTCAGATG
GGTCAAAAGAAACATTGCCAACTTTGGAGGCAACCCTGACAACATCACAA
TATTTGGTGAAAGTGCCGGTGCTGGTAGTGTTTCACATCATTTAATATCC
CCAATGTCAAAGGGCCTCTTCAACAGAGCAATCCCACAGAGTGGAGCCAC
CACATGTTTTTGGGCTACAGCATTCGAACCAAAAGAAAAAGCCATACTTC
TCGCTAAACAACTGGGTTTTCATTCAGAGGACGAAAAAGAACTATATGAA
TTCTTCAAAAAACAGCCGTGTGAAAATCTGGTCAACTTAAAATTACAAGT
AACGACATCACAGAAGTCTTATGAGATTCATTTCAGTATTGCAAATGAGA
AAGATTTTGGACAGGAAAGATTTTTCTATGGCGATTTCGTCGACGCAATG
AAAAACAATTTGCAGGAAGGTGTAGACATTATGACGGGTTACACAAAGGA
CGAGTGTACGATATCGATATCCATCGGTGGACCACTGGAAGACATTCTTG
CAAAAGCTCAGAGATACCGGGAATTTTTCGCTCCCAAACTGATACAGAAC
TTCGGGACGATAACTGACCAGTTAGAAGCTGCACGGAAGCTACAAAAGTT
TTATTTCAAAAACGAGAGAGTATCGAAAGACAATATTGATACTTTAATGA
AATACATAAGTGTTGATATGTTCGTCCATGGCGTGATGTTGGCTGCGAAG
TTCTATTCAAGGAAGAATAAAGTTTACTTTTACAAATTCAATTGTTACTC
AGAGAGGAATGTCTTCACGGATGCCTTTTGCGTCGGCCATCTGAACGAAG
GCCGGGAAGTAGTAAGTCATGCGGATGATTTGGCATATCTCTTCCCAGTG
AAACTTTTCACGCAAAAAGTTGATAAAACATCGGACACATTCAAACTGAT
TGACAGGGTCACTAAACTTTGGACAAACTTCGCCAAATACGGGTGAGTGA
AATATCTTTTTTATCTTTTCAGTGGACCGTCTAATGTGCTCAATCGCTCT
GAGATAAAAATAATCTCATTTTATGACATTCGAATATCTATCAATTGATT
TAGATTGTGCGATAGAAAAAGATTTCCTTTAAATATTAAGAAAGTGTTTC
AAACATATTTTTAACGACTATAGGTAAAAGTTCAAATGTAACTAAAGTCC
ACAGTAATCTCTTTCAAAATGAGCCCACAACTAAAAATCAACTATATCTA
ATAGAAAATAAAACATAAATTTTCATTCACAATACCATACACACCATCTT
TTAAGAATAACACCAACATTCTGTTTTCTTTGTCAATAGAAACCCGACTC
CAGATAACAGCTTAGGAGTGAAATGGCTCCCATACACCTTAGCAGCTCAG
GACTATATGGACATTGGTGACAAGCTGATCCCTGGTCATTCACCAGACCA
GGAAGAACTTGACTTCTGGGAGTCTATATTTCAACAGTACCTGCCTAAAT
TCAGTATGTTAAACAAATAATTCACCACAATAGTGCCAACACAACAAGCT
ATACCAAACTGTTGTTAACAGATTTTCAAATCTATTTCTATGATGATAAA
GTTGAAAATGTTTTGGGTTAGTTTCATATGCTTGCGTCTTGTGTAGTGCT
AAGAACTAATTTTGTTTTTGTTTTATAGTAAGAAAAGTCTTTACTTGATA
GGATTTGTTAAAAGACTAACTCTAATTAATATAAATATCTATAATATAAT
TAATATATTGTTACAAGTAAATATGTTGAAGTAAGTGTTACGTACCATGT
AATTTCAAATAATATAATATGTTATCTTAATGACTAACATAAATTAATAA
AGTGGAATACGTCAATAGATCATTCATTATAGTATTATCTACAATAATAA
AATTTATTGAATGTATACCATCAAAAGATATAACATAGAATTCAAATTTA
CTTGATTTTATTTTACATGCAT
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Coding sequence (CDS) from alignment at SFRU_RICE_002768:42755..45476+

>SFRICE006035-RA ID=SFRICE006035-RA|Name=SFRICE006035-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1617bp|location=Sequence derived from alignment at SFRU_RICE_002768:42755..45476+ (Spodoptera frugiperda rice)
ATGGTGCAAGTGAGAGTGAGCGATGGTTTGCTCGAGGGGGAACAGGTCCA
GAATGAGTTCGGAGGGTCGTTCTACAGGTTCAGAGGAATACCGTACGCCC
AGCCACCTCTTGGAGATCTCCGGTTTAAGGCACCGCAACCAATTAAACCA
TGGCAAGGTGTACGGCAAGCCAAACAATTTGGCCCAGTGTGTTACCAGTT
CAACCCCACCAACCCTGGACTATCAAACATGAGTGAAGACTGCTTATACG
TGAATGTTTATACTCCAGACGTTAAGCCTCAAACCCCTCTACCTGTAATG
GTTTGGATCCACGGAGGAGGATACGTATGGGGAAGTGGCAATGACGACCT
CTACGGCCCAGAATTTCTAATCAGACATAATGTAGTTCTAGTCACATTCA
ACTACAGACTCGAAGTTCTCGGCTTTCTTTGCCTTGACACTGCAGACGTT
CCAGGCAATGCTGGCATGAAAGATCAAGTAGCAGCCCTCAGATGGGTCAA
AAGAAACATTGCCAACTTTGGAGGCAACCCTGACAACATCACAATATTTG
GTGAAAGTGCCGGTGCTGGTAGTGTTTCACATCATTTAATATCCCCAATG
TCAAAGGGCCTCTTCAACAGAGCAATCCCACAGAGTGGAGCCACCACATG
TTTTTGGGCTACAGCATTCGAACCAAAAGAAAAAGCCATACTTCTCGCTA
AACAACTGGGTTTTCATTCAGAGGACGAAAAAGAACTATATGAATTCTTC
AAAAAACAGCCGTGTGAAAATCTGGTCAACTTAAAATTACAAGTAACGAC
ATCACAGAAGTCTTATGAGATTCATTTCAGTATTGCAAATGAGAAAGATT
TTGGACAGGAAAGATTTTTCTATGGCGATTTCGTCGACGCAATGAAAAAC
AATTTGCAGGAAGGTGTAGACATTATGACGGGTTACACAAAGGACGAGTG
TACGATATCGATATCCATCGGTGGACCACTGGAAGACATTCTTGCAAAAG
CTCAGAGATACCGGGAATTTTTCGCTCCCAAACTGATACAGAACTTCGGG
ACGATAACTGACCAGTTAGAAGCTGCACGGAAGCTACAAAAGTTTTATTT
CAAAAACGAGAGAGTATCGAAAGACAATATTGATACTTTAATGAAATACA
TAAGTGTTGATATGTTCGTCCATGGCGTGATGTTGGCTGCGAAGTTCTAT
TCAAGGAAGAATAAAGTTTACTTTTACAAATTCAATTGTTACTCAGAGAG
GAATGTCTTCACGGATGCCTTTTGCGTCGGCCATCTGAACGAAGGCCGGG
AAGTAGTAAGTCATGCGGATGATTTGGCATATCTCTTCCCAGTGAAACTT
TTCACGCAAAAAGTTGATAAAACATCGGACACATTCAAACTGATTGACAG
GGTCACTAAACTTTGGACAAACTTCGCCAAATACGGAAACCCGACTCCAG
ATAACAGCTTAGGAGTGAAATGGCTCCCATACACCTTAGCAGCTCAGGAC
TATATGGACATTGGTGACAAGCTGATCCCTGGTCATTCACCAGACCAGGA
AGAACTTGACTTCTGGGAGTCTATATTTCAACAGTACCTGCCTAAATTCA
GTATGTTAAACAAATAA
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Synonyms
The feature 'SFRICE006035-RA' has the following synonyms
Synonym
SFRICE006035-PA
SFRICE006035
augustus_masked-SFRU_RICE_002768-processed-gene-0.10-mRNA-1