SFRICE026721-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE026721-RA
Unique NameSFRICE026721-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_002992contigSFRU_RICE_002992:7938..10578 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE026721
eAED0.15
QI159|1|0.66|1|1|1|3|160|545
AED0.15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE026721SFRICE026721Spodoptera frugiperda ricegeneSFRU_RICE_002992 7938..10578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE026721-RASFRICE026721-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_002992 8098..10419 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE026721-RA-exonSFRICE026721-RA-exon-3Spodoptera frugiperda riceexonSFRU_RICE_002992 7938..8260 -
SFRICE026721-RA-exonSFRICE026721-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_002992 8487..9775 -
SFRICE026721-RA-exonSFRICE026721-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_002992 10234..10578 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE026721-RA-three_prime_UTRSFRICE026721-RA-three_prime_UTR-8Spodoptera frugiperda ricethree_prime_UTRSFRU_RICE_002992 7938..8097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE026721-RA-CDSSFRICE026721-RA-CDS-3Spodoptera frugiperda riceCDSSFRU_RICE_002992 8098..8260 -
SFRICE026721-RA-CDSSFRICE026721-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_002992 8487..9775 -
SFRICE026721-RA-CDSSFRICE026721-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_002992 10234..10419 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE026721-RA-five_prime_UTRSFRICE026721-RA-five_prime_UTR-4Spodoptera frugiperda ricefive_prime_UTRSFRU_RICE_002992 10420..10578 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE026721-RA ID=SFRICE026721-RA|Name=SFRICE026721-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1957bp|location=Sequence derived from alignment at SFRU_RICE_002992:7938..10578- (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
TACCGTTCAAGGTACAGCAGTATTACTCATTCTTTTTTAATACATAATTA
TTATAAAACGAAACTCGACATCGAGTAGTTCTACTAAAAAAAAAAGAAGT
TCAGCAAAACAGAAGTGAATAAATAAAAATAAACTCTATTCTATTCAAAA
TAAGGTGTAATGTTCGTAAGTTACAAGTGGTTAGTGCTGTGGACGTTATG
GGCTGGTCGGTTTGTTCGTCAGCCCACTCCAGTAAGGAGTCTACATGATG
GATCTTTAGTGAGAGGACAGTACTCAGTGGACGGTTCCTATCAACGGTAC
ACCGGTATACCATATGCAAGCTCCGAACATAAGTATAGATTTAAGGCCCC
TGGACCTGCTCCTAAATGGGATGGTGTATTCGAAGCTACCACAGAACATA
TACGATGCCCACAGACAAACTTCAAATTCCTCCCTCCAGTACTTGGGACC
GAAGACTGCCTCACGATCAACGTTTACAGTCCAAACCATGCCTGGGATGG
TGCACCCCTACCCGTCATGGTCTTCATCCATGGAGGTGGATTCAGAGAGG
GATCTGGAGCCTCTCTGCTGTATGGACCGGACTTTTTAGTTGCCAAAGGA
GTCGTTCTTGTCACTTTCAATTATAGACTAAACGTCCATGGATTCCTTTG
CTTAGGTATCAAGGATGCTCCTGGTAACGCAGGACTTAAAGACCAAGTTA
CTGCGCTCAAGTGGGTTCAGAAAAACATCCGAGCGTTTGGTGGAAACCCT
GACAGCGTTACTATATTTGGTGAGAGTGCCGGTGGTGCTTCGGTGTCCTA
CCATTTACTTTCGCCAATGTCTAAAGGACTGTTTCACAGAGCTATAGCTC
AAAGTGGATCCTCTGTATCAGCGTTTGCAAGAAAACGGTATCCTTTAGAT
CAAGCAGTTGCTTTAGCAAAAGCTTTGGGTTTGAATATTAACGATCCCCA
AGAACTGTATGAAGCTTTCAATAAAATGTCTCTGGATGAGTTAGTTGGTA
CAGAAATACCACGAGTGGAAGGAAGATTGCAATTTGCACATCTGCCATTT
GTACCGTGCACTGAGCAGCCAATAGATGGCGTTGAACCGTTTATAACTGA
TGCACCTTTTAATATCTTCTCTAAAGGAGACTATAACAAGGTTCCTGTCA
TCATAGGCTCCAACAGTGAAGAAGGGTATTATTTTGCAAGTTTAGATACT
GATACAACTTTGTCGAATCTTAGTTTTGAACGCTCAATAGAATTGTTTGA
CCTTAAATTTCCATCCGAGGAGAAGAAAAAAGAAGTTGCGAACAATTTGA
AGAAGATATATATGGGTGATGAGAAAATTTCGCGGGAGAACATTGTGAAG
CTTTCCAGATTCCATGGGGAACCATATTTTAATTTGCCAGAGTATATTGA
GACTTATCTCATATTAAAGACGAGTGATAAGCCTGTTTATAAGTATGAGT
TTCAGTACAGTGGGAGGAGGAATGTTCCAAAATTTGTTGCTGGGTCTACA
TTCAGGAGTGCTCCAGGGGCTACTCATGCCGATGAGCTGTTCTACATGTT
TAGTTTGTTTCCAATACCAATTATGTTTGAGACCGAAATGATCAGGACTA
TGACCACTTTGTGGACTAATTTTGCCAAATACGGGACGCCTACACCAGAC
GGTAGTGAGTTCAACTGGCCTCCTACTTCCCTGGCTGTGCCAACGAGACT
GAACATCAATGACCAGCTCTCCATAGTCCGTAATCCTCCAATTACGGAAA
CTGTGCAATATTGGAAGCAGTTGTATGATCAGTATCGTGCTTCATAGCCC
AGTAGTAATTATAGAGTAGTTAGTAGTTTAATTTGTAAGTAGTAATTTTT
GTAATGAGGTGGTTAAAAGTATTAAAGTGTTTTTATTGTATAAGAGTTAA
GTAATATATTTTTTATTGTTAATTAATTAAAATATTGAGTTGTAGATTTT
TATTTCG
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protein sequence of SFRICE026721-RA

>SFRICE026721-PA ID=SFRICE026721-PA|Name=SFRICE026721-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=546bp
MFVSYKWLVLWTLWAGRFVRQPTPVRSLHDGSLVRGQYSVDGSYQRYTGI
PYASSEHKYRFKAPGPAPKWDGVFEATTEHIRCPQTNFKFLPPVLGTEDC
LTINVYSPNHAWDGAPLPVMVFIHGGGFREGSGASLLYGPDFLVAKGVVL
VTFNYRLNVHGFLCLGIKDAPGNAGLKDQVTALKWVQKNIRAFGGNPDSV
TIFGESAGGASVSYHLLSPMSKGLFHRAIAQSGSSVSAFARKRYPLDQAV
ALAKALGLNINDPQELYEAFNKMSLDELVGTEIPRVEGRLQFAHLPFVPC
TEQPIDGVEPFITDAPFNIFSKGDYNKVPVIIGSNSEEGYYFASLDTDTT
LSNLSFERSIELFDLKFPSEEKKKEVANNLKKIYMGDEKISRENIVKLSR
FHGEPYFNLPEYIETYLILKTSDKPVYKYEFQYSGRRNVPKFVAGSTFRS
APGATHADELFYMFSLFPIPIMFETEMIRTMTTLWTNFAKYGTPTPDGSE
FNWPPTSLAVPTRLNINDQLSIVRNPPITETVQYWKQLYDQYRAS.
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mRNA from alignment at SFRU_RICE_002992:7938..10578-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE026721-RA ID=SFRICE026721-RA|Name=SFRICE026721-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2641bp|location=Sequence derived from alignment at SFRU_RICE_002992:7938..10578- (Spodoptera frugiperda rice)
TACCGTTCAAGGTACAGCAGTATTACTCATTCTTTTTTAATACATAATTA
TTATAAAACGAAACTCGACATCGAGTAGTTCTACTAAAAAAAAAAGAAGT
TCAGCAAAACAGAAGTGAATAAATAAAAATAAACTCTATTCTATTCAAAA
TAAGGTGTAATGTTCGTAAGTTACAAGTGGTTAGTGCTGTGGACGTTATG
GGCTGGTCGGTTTGTTCGTCAGCCCACTCCAGTAAGGAGTCTACATGATG
GATCTTTAGTGAGAGGACAGTACTCAGTGGACGGTTCCTATCAACGGTAC
ACCGGTATACCATATGCAAGCTCCGAACATAAGTATAGATTTAAGGTAAG
GATTAATAATATTACTAACCTAAACTCAAAGCATAAAAGTCACAATTACC
TAAGGTAATCATATATCCTATGATTTAGTTTTTGGGTATCAGCCGGTAAT
CGACCTGACGGATCACCTAATGGTATGCAATCGCTGCCGCCCACGGAACC
ATGAAACACTAAAGGCGTTGTAATTGGGCCTCTGGTAATCTCATTCACAC
AACGCAAGCGTTGTTTTACGTCGGTTTTCTGTAAGGCTGTGGAATCACTC
CATCCGAGCCGGCCGTTTCGTGCCGAAGCATGGCTCTCCCACACTCATTT
AAAAATATAAGCAATCCTCAGTTCCATAGCAGGGAAACGAAAATTTTGGC
TTCATCAGCAAATGGAATAACACCAATGAATAAAAACACTAATAAACTGC
AAATACTTGATAACCCAACCATTAGATTATTAAACCATTAACTACAATTC
CAGGCCCCTGGACCTGCTCCTAAATGGGATGGTGTATTCGAAGCTACCAC
AGAACATATACGATGCCCACAGACAAACTTCAAATTCCTCCCTCCAGTAC
TTGGGACCGAAGACTGCCTCACGATCAACGTTTACAGTCCAAACCATGCC
TGGGATGGTGCACCCCTACCCGTCATGGTCTTCATCCATGGAGGTGGATT
CAGAGAGGGATCTGGAGCCTCTCTGCTGTATGGACCGGACTTTTTAGTTG
CCAAAGGAGTCGTTCTTGTCACTTTCAATTATAGACTAAACGTCCATGGA
TTCCTTTGCTTAGGTATCAAGGATGCTCCTGGTAACGCAGGACTTAAAGA
CCAAGTTACTGCGCTCAAGTGGGTTCAGAAAAACATCCGAGCGTTTGGTG
GAAACCCTGACAGCGTTACTATATTTGGTGAGAGTGCCGGTGGTGCTTCG
GTGTCCTACCATTTACTTTCGCCAATGTCTAAAGGACTGTTTCACAGAGC
TATAGCTCAAAGTGGATCCTCTGTATCAGCGTTTGCAAGAAAACGGTATC
CTTTAGATCAAGCAGTTGCTTTAGCAAAAGCTTTGGGTTTGAATATTAAC
GATCCCCAAGAACTGTATGAAGCTTTCAATAAAATGTCTCTGGATGAGTT
AGTTGGTACAGAAATACCACGAGTGGAAGGAAGATTGCAATTTGCACATC
TGCCATTTGTACCGTGCACTGAGCAGCCAATAGATGGCGTTGAACCGTTT
ATAACTGATGCACCTTTTAATATCTTCTCTAAAGGAGACTATAACAAGGT
TCCTGTCATCATAGGCTCCAACAGTGAAGAAGGGTATTATTTTGCAAGTT
TAGATACTGATACAACTTTGTCGAATCTTAGTTTTGAACGCTCAATAGAA
TTGTTTGACCTTAAATTTCCATCCGAGGAGAAGAAAAAAGAAGTTGCGAA
CAATTTGAAGAAGATATATATGGGTGATGAGAAAATTTCGCGGGAGAACA
TTGTGAAGCTTTCCAGATTCCATGGGGAACCATATTTTAATTTGCCAGAG
TATATTGAGACTTATCTCATATTAAAGACGAGTGATAAGCCTGTTTATAA
GTATGAGTTTCAGTACAGTGGGAGGAGGAATGTTCCAAAATTTGTTGCTG
GGTCTACATTCAGGAGTGCTCCAGGGGCTACTCATGCCGATGAGCTGTTC
TACATGTTTAGTTTGTTTCCAATACCAATTATGTTTGAGACCGAAATGAT
CAGGACTATGACCACTTTGTGGACTAATTTTGCCAAATACGGGTGAGTAT
TTTTATTTTGTATTATGGTATAAGCTGGTAAACGAGCATACGAATCTCCT
GATGGTAAGCAATCGCCGTCGCCCATGGACTTCCGAAACACAAGAGGTGT
TACAATTGCGTTGCCGGCCTTTTGGGGGTAAGGAATTTAAGGGTTGTTGG
GGAATTGGGAAATGCAAGCGTTGATGATGCGATGATGGTGTTTTATACAT
ATCCTTCTTTGTTCACAGGACGCCTACACCAGACGGTAGTGAGTTCAACT
GGCCTCCTACTTCCCTGGCTGTGCCAACGAGACTGAACATCAATGACCAG
CTCTCCATAGTCCGTAATCCTCCAATTACGGAAACTGTGCAATATTGGAA
GCAGTTGTATGATCAGTATCGTGCTTCATAGCCCAGTAGTAATTATAGAG
TAGTTAGTAGTTTAATTTGTAAGTAGTAATTTTTGTAATGAGGTGGTTAA
AAGTATTAAAGTGTTTTTATTGTATAAGAGTTAAGTAATATATTTTTTAT
TGTTAATTAATTAAAATATTGAGTTGTAGATTTTTATTTCG
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Coding sequence (CDS) from alignment at SFRU_RICE_002992:7938..10578-

>SFRICE026721-RA ID=SFRICE026721-RA|Name=SFRICE026721-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1638bp|location=Sequence derived from alignment at SFRU_RICE_002992:7938..10578- (Spodoptera frugiperda rice)
ATGTTCGTAAGTTACAAGTGGTTAGTGCTGTGGACGTTATGGGCTGGTCG
GTTTGTTCGTCAGCCCACTCCAGTAAGGAGTCTACATGATGGATCTTTAG
TGAGAGGACAGTACTCAGTGGACGGTTCCTATCAACGGTACACCGGTATA
CCATATGCAAGCTCCGAACATAAGTATAGATTTAAGGCCCCTGGACCTGC
TCCTAAATGGGATGGTGTATTCGAAGCTACCACAGAACATATACGATGCC
CACAGACAAACTTCAAATTCCTCCCTCCAGTACTTGGGACCGAAGACTGC
CTCACGATCAACGTTTACAGTCCAAACCATGCCTGGGATGGTGCACCCCT
ACCCGTCATGGTCTTCATCCATGGAGGTGGATTCAGAGAGGGATCTGGAG
CCTCTCTGCTGTATGGACCGGACTTTTTAGTTGCCAAAGGAGTCGTTCTT
GTCACTTTCAATTATAGACTAAACGTCCATGGATTCCTTTGCTTAGGTAT
CAAGGATGCTCCTGGTAACGCAGGACTTAAAGACCAAGTTACTGCGCTCA
AGTGGGTTCAGAAAAACATCCGAGCGTTTGGTGGAAACCCTGACAGCGTT
ACTATATTTGGTGAGAGTGCCGGTGGTGCTTCGGTGTCCTACCATTTACT
TTCGCCAATGTCTAAAGGACTGTTTCACAGAGCTATAGCTCAAAGTGGAT
CCTCTGTATCAGCGTTTGCAAGAAAACGGTATCCTTTAGATCAAGCAGTT
GCTTTAGCAAAAGCTTTGGGTTTGAATATTAACGATCCCCAAGAACTGTA
TGAAGCTTTCAATAAAATGTCTCTGGATGAGTTAGTTGGTACAGAAATAC
CACGAGTGGAAGGAAGATTGCAATTTGCACATCTGCCATTTGTACCGTGC
ACTGAGCAGCCAATAGATGGCGTTGAACCGTTTATAACTGATGCACCTTT
TAATATCTTCTCTAAAGGAGACTATAACAAGGTTCCTGTCATCATAGGCT
CCAACAGTGAAGAAGGGTATTATTTTGCAAGTTTAGATACTGATACAACT
TTGTCGAATCTTAGTTTTGAACGCTCAATAGAATTGTTTGACCTTAAATT
TCCATCCGAGGAGAAGAAAAAAGAAGTTGCGAACAATTTGAAGAAGATAT
ATATGGGTGATGAGAAAATTTCGCGGGAGAACATTGTGAAGCTTTCCAGA
TTCCATGGGGAACCATATTTTAATTTGCCAGAGTATATTGAGACTTATCT
CATATTAAAGACGAGTGATAAGCCTGTTTATAAGTATGAGTTTCAGTACA
GTGGGAGGAGGAATGTTCCAAAATTTGTTGCTGGGTCTACATTCAGGAGT
GCTCCAGGGGCTACTCATGCCGATGAGCTGTTCTACATGTTTAGTTTGTT
TCCAATACCAATTATGTTTGAGACCGAAATGATCAGGACTATGACCACTT
TGTGGACTAATTTTGCCAAATACGGGACGCCTACACCAGACGGTAGTGAG
TTCAACTGGCCTCCTACTTCCCTGGCTGTGCCAACGAGACTGAACATCAA
TGACCAGCTCTCCATAGTCCGTAATCCTCCAATTACGGAAACTGTGCAAT
ATTGGAAGCAGTTGTATGATCAGTATCGTGCTTCATAG
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Synonyms
The feature 'SFRICE026721-RA' has the following synonyms
Synonym
SFRICE026721-PA
SFRICE026721
maker-SFRU_RICE_002992-augustus-gene-0.10-mRNA-1