SFRICE030757-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE030757-RA
Unique NameSFRICE030757-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_006250contigSFRU_RICE_006250:8213..10355 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE030757
eAED0.10
QI0|0|0|1|1|1|4|0|211
AED0.10
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE030757SFRICE030757Spodoptera frugiperda ricegeneSFRU_RICE_006250 8213..10355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE030757-RASFRICE030757-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_006250 8213..10355 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE030757-RA-exonSFRICE030757-RA-exon-4Spodoptera frugiperda riceexonSFRU_RICE_006250 8213..8252 -
SFRICE030757-RA-exonSFRICE030757-RA-exon-3Spodoptera frugiperda riceexonSFRU_RICE_006250 8428..8612 -
SFRICE030757-RA-exonSFRICE030757-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_006250 9145..9416 -
SFRICE030757-RA-exonSFRICE030757-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_006250 10217..10355 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE030757-RA-CDSSFRICE030757-RA-CDS-4Spodoptera frugiperda riceCDSSFRU_RICE_006250 8213..8252 -
SFRICE030757-RA-CDSSFRICE030757-RA-CDS-3Spodoptera frugiperda riceCDSSFRU_RICE_006250 8428..8612 -
SFRICE030757-RA-CDSSFRICE030757-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_006250 9145..9416 -
SFRICE030757-RA-CDSSFRICE030757-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_006250 10217..10355 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE030757-RA ID=SFRICE030757-RA|Name=SFRICE030757-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=636bp|location=Sequence derived from alignment at SFRU_RICE_006250:8213..10355- (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
CTGAAAGTAGACCTGCTGTTCAAGCGCGAGTTCAGTTACTACCTGATCCA
GATCTACATCCCATGCTGCATGTTGGTGATCGTGTCCTGGGTGTCCTTCT
GGCTGGACCAGGGAGCGGTGCCTGCTAGAGTTTCACTAGGTGTAACGACA
CTCCTCACGATGGCGACCCAGTCGTCAGGTATCAACGCCTCCCTGCCTCC
AGTGTCGTACACAAAAGCCATCGACGTCTGGACAGGCGTGTGCCTCACCT
TCGTCTTCGGAGCACTGCTAGAGTTCGCTCTAGTGAACTATGCGTCTCGC
TCTGACATGCATAGAGAAAATATGAAGAAAGCGAGAAGGGAGATGGAAGC
AGCCAGCATGGACGCTGCCTCCGACCTCCTCGACACAGATAGCAACACCA
CGTTTGCTATGAAACCCTTGGTGCGCGGCGGCGTGGTGGAATCCAAGATG
CGGCAGTGCGAGATCCACATCAACCCTCCGCGCAAGAACTGCTGCCGGCT
CTGGATGTCCAAGTTCCCCACTCGCTCCAAGAGGATAGACGTCATCTCGA
GGATCACCTTCCCGCTTGTGTTCGCCTTATTTAATTTGGCTTATTGGTCG
ACGTACCTATTCCGCGACGAAGACGAAGAGAAGTGA
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protein sequence of SFRICE030757-RA

>SFRICE030757-PA ID=SFRICE030757-PA|Name=SFRICE030757-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=212bp
LKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTT
LLTMATQSSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASR
SDMHRENMKKARREMEAASMDAASDLLDTDSNTTFAMKPLVRGGVVESKM
RQCEIHINPPRKNCCRLWMSKFPTRSKRIDVISRITFPLVFALFNLAYWS
TYLFRDEDEEK.
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mRNA from alignment at SFRU_RICE_006250:8213..10355-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE030757-RA ID=SFRICE030757-RA|Name=SFRICE030757-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2143bp|location=Sequence derived from alignment at SFRU_RICE_006250:8213..10355- (Spodoptera frugiperda rice)
CTGAAAGTAGACCTGCTGTTCAAGCGCGAGTTCAGTTACTACCTGATCCA
GATCTACATCCCATGCTGCATGTTGGTGATCGTGTCCTGGGTGTCCTTCT
GGCTGGACCAGGGAGCGGTGCCTGCTAGAGTTTCACTAGGTATGGTACCA
TGGTGAATGTGGGGTAACCGAAACTGACTGGAATAACTTGAGCATATTTT
ATCAAGAAGAGATAGGATCAAGAATGTTTTGTTTTTGGGAGGAGAGGGGA
CTTTAGAATATCAATAATAAGCATTTAGTGTTTTGGCTCTAACCAGGTGG
CGCTAGTAAGGAGTAAGGCAATACCAACTCACCTCTAATATAATAGATGT
CTTAGCCTTCCAAAACATATGTGCCAATTTTAAAAACAATTCAGCTTTTT
CATATCACATTTTAGAAATGTAGAACGTGAACTTTCCTGTCCAGTCTCCA
ATTATAGCCGAGAAATTCTAGAAACTAGTTAGCCACTGCATAGAAGCACA
AGATTGTTCGTAGTAACTATTTGGACCTAACTTCTTCAAAATGCCACAGA
CAAGTAAATTGCTAATGTGAACACGCCATTATTATTTTCCAGAACTACAA
TAGAATTCTTAGAGCTAGATTAAACTGACAGGCTACCTAGACTGTTAAAA
GAATTGGCTTAGTTTTGTATGGAACCTCAGCTAATAGTGGTTTTAATAAG
CCATAGGGATATATCGGGTAGACGACAGGACATACGTGATATCGGAAACT
CATAGACATGAATAAACATGGTAAATATCCCGTCTCAAGTTCTAATGTTA
GGACTACAGGACAGTAGTTCCATTCCAAACTACTGTCATTATCATCATTT
AAACTTTTTTTGAGTATATCATGCGTCGTTATGCTATAACAAGCTGAATT
AAACTACTATTTCCACCACAAACCAATTCCTTGTTCCAGGTGTAACGACA
CTCCTCACGATGGCGACCCAGTCGTCAGGTATCAACGCCTCCCTGCCTCC
AGTGTCGTACACAAAAGCCATCGACGTCTGGACAGGCGTGTGCCTCACCT
TCGTCTTCGGAGCACTGCTAGAGTTCGCTCTAGTGAACTATGCGTCTCGC
TCTGACATGCATAGAGAAAATATGAAGAAAGCGAGAAGGGAGATGGAAGC
AGCCAGCATGGACGCTGCCTCCGACCTCCTCGACACAGATAGCAACACCA
CGTTTGCTATGGTGAGCTCAAATCCGATTTACTTAAGAAATTCAATTCCT
TAGTGCTTTTGGATGAATATTTTCCGCTTTGAAACATTCTTAGATGTTGT
ATTTTGAGAATTTGGTACCGAATTAGTTTTCTTTTTGCATTACGATGAGG
CTTTTTCGAAAGTAGTCCTTGAGTTTGAATGAGGTGAATGATCTGTTTGT
TCGTTTGATCGGATTTATTTGAATATTATTCTTTAATTTCGAGTTATGTA
GTTTGTTTAGGTAGATGGTCAGAATTTTAGTAGTTAGCTTCAGTTATTAA
GATTTGGTACATTATGACTGTTATATTATTATATCTTGTTATTGAAAGTT
ATTGCATCTTCGTCGTGAACTTATCTTTCAAACCAAAATATCTCCAAATT
ACAAAAGCATGCATGTGATGGAGATATTAAAAATGGAGTCTGAGAAAACA
GTGGAAAAGAATTTGTATTCAAAAGCACCTAGCCATACGGTTTAGTCGAA
GATGCAATATGTCTCGCCTCCCTGACTGGTCTGCAACAAACAGAAACCCT
TGGTGCGCGGCGGCGTGGTGGAATCCAAGATGCGGCAGTGCGAGATCCAC
ATCAACCCTCCGCGCAAGAACTGCTGCCGGCTCTGGATGTCCAAGTTCCC
CACTCGCTCCAAGAGGATAGACGTCATCTCGAGGATCACCTTCCCGCTTG
TGTTCGCCTTATTTAATTTGGCTTATTGGTGAGTGTGACATTATATACTT
AGCCATTTTATTTACGTATCAGTGGGGACGTCAAAATATTGAATTAGATT
GGGTGATTTTGTGAAGACGTTTTTGCTTTTATACTTAAGTATTAGGTGAT
GTGAAATCGTTGGCTTGATGAAACATTACTCATTGACTTGAATTTTACCT
CAGGTCGACGTACCTATTCCGCGACGAAGACGAAGAGAAGTGA
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Coding sequence (CDS) from alignment at SFRU_RICE_006250:8213..10355-

>SFRICE030757-RA ID=SFRICE030757-RA|Name=SFRICE030757-RA|organism=Spodoptera frugiperda rice|type=CDS|length=636bp|location=Sequence derived from alignment at SFRU_RICE_006250:8213..10355- (Spodoptera frugiperda rice)
CTGAAAGTAGACCTGCTGTTCAAGCGCGAGTTCAGTTACTACCTGATCCA
GATCTACATCCCATGCTGCATGTTGGTGATCGTGTCCTGGGTGTCCTTCT
GGCTGGACCAGGGAGCGGTGCCTGCTAGAGTTTCACTAGGTGTAACGACA
CTCCTCACGATGGCGACCCAGTCGTCAGGTATCAACGCCTCCCTGCCTCC
AGTGTCGTACACAAAAGCCATCGACGTCTGGACAGGCGTGTGCCTCACCT
TCGTCTTCGGAGCACTGCTAGAGTTCGCTCTAGTGAACTATGCGTCTCGC
TCTGACATGCATAGAGAAAATATGAAGAAAGCGAGAAGGGAGATGGAAGC
AGCCAGCATGGACGCTGCCTCCGACCTCCTCGACACAGATAGCAACACCA
CGTTTGCTATGAAACCCTTGGTGCGCGGCGGCGTGGTGGAATCCAAGATG
CGGCAGTGCGAGATCCACATCAACCCTCCGCGCAAGAACTGCTGCCGGCT
CTGGATGTCCAAGTTCCCCACTCGCTCCAAGAGGATAGACGTCATCTCGA
GGATCACCTTCCCGCTTGTGTTCGCCTTATTTAATTTGGCTTATTGGTCG
ACGTACCTATTCCGCGACGAAGACGAAGAGAAGTGA
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Synonyms
The feature 'SFRICE030757-RA' has the following synonyms
Synonym
SFRICE030757-PA
SFRICE030757
maker-SFRU_RICE_006250-augustus-gene-0.8-mRNA-1