SFRICE013838-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE013838-RA
Unique NameSFRICE013838-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_006488contigSFRU_RICE_006488:11801..25368 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE013838
eAED0.24
QI0|0.25|0.15|1|1|1|13|0|815
AED0.24
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE013838SFRICE013838Spodoptera frugiperda ricegeneSFRU_RICE_006488 11801..25368 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE013838-RA-exonSFRICE013838-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_006488 11801..11899 +
SFRICE013838-RA-exonSFRICE013838-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_006488 17949..18142 +
SFRICE013838-RA-exonSFRICE013838-RA-exon-3Spodoptera frugiperda riceexonSFRU_RICE_006488 18741..18885 +
SFRICE013838-RA-exonSFRICE013838-RA-exon-4Spodoptera frugiperda riceexonSFRU_RICE_006488 19314..19414 +
SFRICE013838-RA-exonSFRICE013838-RA-exon-5Spodoptera frugiperda riceexonSFRU_RICE_006488 19688..20405 +
SFRICE013838-RA-exonSFRICE013838-RA-exon-6Spodoptera frugiperda riceexonSFRU_RICE_006488 20567..20753 +
SFRICE013838-RA-exonSFRICE013838-RA-exon-7Spodoptera frugiperda riceexonSFRU_RICE_006488 21349..21491 +
SFRICE013838-RA-exonSFRICE013838-RA-exon-8Spodoptera frugiperda riceexonSFRU_RICE_006488 22358..22574 +
SFRICE013838-RA-exonSFRICE013838-RA-exon-9Spodoptera frugiperda riceexonSFRU_RICE_006488 23029..23152 +
SFRICE013838-RA-exonSFRICE013838-RA-exon-10Spodoptera frugiperda riceexonSFRU_RICE_006488 23834..23946 +
SFRICE013838-RA-exonSFRICE013838-RA-exon-11Spodoptera frugiperda riceexonSFRU_RICE_006488 24386..24513 +
SFRICE013838-RA-exonSFRICE013838-RA-exon-12Spodoptera frugiperda riceexonSFRU_RICE_006488 25017..25211 +
SFRICE013838-RA-exonSFRICE013838-RA-exon-13Spodoptera frugiperda riceexonSFRU_RICE_006488 25285..25368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_006488 11801..11899 +
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_006488 17949..18142 +
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-3Spodoptera frugiperda riceCDSSFRU_RICE_006488 18741..18885 +
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-4Spodoptera frugiperda riceCDSSFRU_RICE_006488 19314..19414 +
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-5Spodoptera frugiperda riceCDSSFRU_RICE_006488 19688..20405 +
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-6Spodoptera frugiperda riceCDSSFRU_RICE_006488 20567..20753 +
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-7Spodoptera frugiperda riceCDSSFRU_RICE_006488 21349..21491 +
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-8Spodoptera frugiperda riceCDSSFRU_RICE_006488 22358..22574 +
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-9Spodoptera frugiperda riceCDSSFRU_RICE_006488 23029..23152 +
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-10Spodoptera frugiperda riceCDSSFRU_RICE_006488 23834..23946 +
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-11Spodoptera frugiperda riceCDSSFRU_RICE_006488 24386..24513 +
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-12Spodoptera frugiperda riceCDSSFRU_RICE_006488 25017..25211 +
SFRICE013838-RA-CDSSFRICE013838-RA-CDS-13Spodoptera frugiperda riceCDSSFRU_RICE_006488 25285..25368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE013838-RASFRICE013838-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_006488 11801..25368 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE013838-RA ID=SFRICE013838-RA|Name=SFRICE013838-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2448bp|location=Sequence derived from alignment at SFRU_RICE_006488:11801..25368+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTTCCGCCTTGTGCGAGGCGAGAGGGAATGTCAGACTCTTACT
GACTAAAAACCACCCCGTTCCTACTCCTGCTTTTAAAGCCGGATCCCCGT
GGCGCTACGCAACCTGGGTGGAGCGGGCGGTGTCGCTGCTGGGCGCGCTG
GTGGGCGTGCTGAGCTCGCTGGGCACCATCGCCGGCATCGTGCTGTACGG
CGAGCTGACGGCGCTCTTCGTGCGCAGGCACACCGCGCAGCCCGCGCCCT
CAGACATCTACGTGCTCGCGTTCTTCGGAGGGGGGCGACATCTGCCCGAG
GGCAATAGGTCGCTGCACATGGACGCGCTGCTGGAGGACAGCGCGGCGTT
CGCGTGGGCCAGCGCCGCCGTCATAGCGTTACATATCCTCAGCGCCGCGC
TCGCAGTCGCGCTGCTGCAGTGGGCCTCCGCCAGGATGGTGACGCGGCTG
CGCATCCGGCTGCTGCGCTCGGTGATCAGCCAGGAGATCGCGTTCTTCGA
CACCAACACCGACATGAACTTCGCCACCACCATCACCGAGGACATGGAGA
AGTTCCGGTGCGGGGTGGGCGAGCACGTGGCGATGACGGCCAACCTGGCG
GGCACCGTGCTGCTGGGCGCCGGCCTGGCGCTGCACTACGGCTGGCAGCT
CGCGCTGGCCGGGCTCTCTGTAGTCCCCGCTGCGCTCGCCGTCGCCGCCG
TCGTGGCGCGCTACCAGACCAAGTGCAACGCGCGTGAAGTATCGGCGTAT
GGAAGTGCAGCGCGCGTGGTTGAGGAAGCGCTGGGCGCCGTGCGCACGGT
GCGCGCGTACGGCGCCGAGCGCGGCGAGTGCGCGCGCTACGGCCGCGCGC
TGCGCGCTGCGAGTGTGGAGGCGCGCGCGCGGGCCGCGTGGGCCGGGGCG
GGGGCCGGGCTCGGCTGGCTGCTCACGTACGCGCTCAACGCCATCGTGTT
CGCGTACGGCGCCGAGCTGTGCGTGCGCGACATGGGGCTCGAACCCGCGC
TGCAGCAGTACCACGCCGGCGTGATGGTGACCGTGCTGTTCCTCACGTTC
ATGGCGGCGCAGAACATCGCCATGTGCCAGCCGCACCTCGAGACCTTCAG
CGCGGCCCGCGGCGCCGCGCGCAGTCTCTACCGCCTGCTGCAGCGCCGGA
CCAGGATCAACGCACTCGACTCCACGGGAATCAAACCCGACAAGTTCCGC
GGAGATATTACGTTCGAGAATCTCTACTTCAATTATCCTTCGAGGCCTGA
TGTCAAGGTCCTCCGCGGTCTGAGCCTGCGCGTGCGCGCGGGGTCGAGCG
TGGCGCTGGTGGGCGGGTCTGGGTGCGGCAAGTCCACGCTGCTGCAGCTG
CTGCAGCGCCTGTACGAGCCCGACTCGGGGACCATCACCGTGGACGGACA
CCCGCTGCACGCGCTCGACCTGCATCACTTCAGGAAGAGCATCGGAGTGG
TAGGACAGGAGCCGGTGTTGTTCTCTGGTACCATCCGGGAGAACATCACG
CTGGGCATGGATGACGTCACCGACGCCGACGTCATCGAGGCCGCCACCAC
CGCGCACGCGCACCAGTTCATCACCAAACTTGCCAATGGTTACGACACGC
TGCTAGGCGCGGGCGGGTCCCAGTTATCAGGTGGTCAGAAGCAGCGCATC
GCGATCGCGCGCGCCATCGTGCGGCGGCCGGCGGTGCTGCTGCTGGACGA
GCCCACGGCGGCGCTGGACCCGGCCGCCGAGCGGGCCGTCGCCGCCGCGC
TCGCCGCCGCCGCCACCGGCCGCACCACGCTGCAAGTCTCGCACCGCCTG
CAGGGTCTGTCGGGGCACCACATCGTGTGCGTGGAGCAGGGCGCGGTCCG
CGAGCACGGCTCGCACGAGGAGCTGCTGGAGAGACGAGGGGTCTACTGGG
CGCTGCTGCAGGAGGACCTCACCACCAAGAGTGTGAACGTGATGAACTCG
GAGCCGATAGAGGAGGACGACGACGATGACGTCACTGCTGCTGACGATCA
CACCCACTTCAAGAGGGGAGTCAGTCGACAGTCCGTTAGAGAGTCGTCCC
GCCACTTCGTCCGCAGCAGTATCCGCATGAGCTCCGTGTCGGCGCATATA
CCACACAGCGCGCTCTCGCAGATTGTACGTATACTACTGTACTACATACC
CGTTACAATGGAGGTGTTGGACACAGAGGACGTGGAGGACCCTGTGGAGG
CCACGGAGGAGGAAGGAGAGGACGCAAGTCCCTCAGTATCTAGCTGGGAG
CTGCTGAAGCTGAACGCGGCGGAGTGGCCGCAGCTGCTGGGGGGGGCGCT
GGCGTCGCTACTGGTGGGGGCCACCATGCCGGTGTTTGCTTTACTGTTCG
CTGAGCTATACGGGGACGAGGGGAGAGGAAGTGTCAGACTCTTACTGACT
GAAACCACCCCGTTCCTACTCCTGCTTTTCGAGCCGGAGCCCCGGTAA
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protein sequence of SFRICE013838-RA

>SFRICE013838-PA ID=SFRICE013838-PA|Name=SFRICE013838-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=816bp
MSSSALCEARGNVRLLLTKNHPVPTPAFKAGSPWRYATWVERAVSLLGAL
VGVLSSLGTIAGIVLYGELTALFVRRHTAQPAPSDIYVLAFFGGGRHLPE
GNRSLHMDALLEDSAAFAWASAAVIALHILSAALAVALLQWASARMVTRL
RIRLLRSVISQEIAFFDTNTDMNFATTITEDMEKFRCGVGEHVAMTANLA
GTVLLGAGLALHYGWQLALAGLSVVPAALAVAAVVARYQTKCNAREVSAY
GSAARVVEEALGAVRTVRAYGAERGECARYGRALRAASVEARARAAWAGA
GAGLGWLLTYALNAIVFAYGAELCVRDMGLEPALQQYHAGVMVTVLFLTF
MAAQNIAMCQPHLETFSAARGAARSLYRLLQRRTRINALDSTGIKPDKFR
GDITFENLYFNYPSRPDVKVLRGLSLRVRAGSSVALVGGSGCGKSTLLQL
LQRLYEPDSGTITVDGHPLHALDLHHFRKSIGVVGQEPVLFSGTIRENIT
LGMDDVTDADVIEAATTAHAHQFITKLANGYDTLLGAGGSQLSGGQKQRI
AIARAIVRRPAVLLLDEPTAALDPAAERAVAAALAAAATGRTTLQVSHRL
QGLSGHHIVCVEQGAVREHGSHEELLERRGVYWALLQEDLTTKSVNVMNS
EPIEEDDDDDVTAADDHTHFKRGVSRQSVRESSRHFVRSSIRMSSVSAHI
PHSALSQIVRILLYYIPVTMEVLDTEDVEDPVEATEEEGEDASPSVSSWE
LLKLNAAEWPQLLGGALASLLVGATMPVFALLFAELYGDEGRGSVRLLLT
ETTPFLLLLFEPEPR.
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mRNA from alignment at SFRU_RICE_006488:11801..25368+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE013838-RA ID=SFRICE013838-RA|Name=SFRICE013838-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=13568bp|location=Sequence derived from alignment at SFRU_RICE_006488:11801..25368+ (Spodoptera frugiperda rice)
ATGTCTTCTTCCGCCTTGTGCGAGGCGAGAGGGAATGTCAGACTCTTACT
GACTAAAAACCACCCCGTTCCTACTCCTGCTTTTAAAGCCGGATCCCCGG
TAAACCCGCTAGGTAGTCCGCAGCTCGTATTCTGTCGCATGGGATAACAC
GGTTTTAAATCAAATCCAATCGCTTTAATGCATTCATAGTGTACAGTGTC
GTCTACAATTTTATATAGTAATATGTTCCAACTATGGGCCCTATTGGTTT
GACAGAGACCGGGCAGCAGTGGTCTGTGATATACCTGAACCTTTAGAAAA
TATGATCTCCAACTCGTTTGTCAAGTATGGAGATTATGGAAAACTCTCGT
GATGTATATCACGCCCACGATCCAACAGTGGACTGTTATAACGTGCTGAT
GATGTAGTGTAGTATCGACTATTACTTAGTACTTATTCCAGTACTTTCTT
AGTTCTTTATTTGACTATTAGTTAGTACTTATTCTATGACTTTCTACTGT
CTGTAGTACACTGGCAGTGCGGGGAGATCCCGTCGCCTGCACTCCGTACT
GTGTCAAGTGGGTCTGCTTCAAGGAAAGTAAACGCACACCTATTGTTTCT
GTGTTTGCTTTCTTATGTATCTAGTGTGTGTCTAACGGTGATGTCATATC
TGTATTTAAGGGAAGATTTTATTGTTTGTTTGTTTACATGGAGTGGTCTT
CGAAATTACTGGACATTGGACGCGTTTGAAAAGGTCTTGGAAAGCTTACT
CTTCAAGGAGTACCTATTTAATTTTTCTACGTAATAGGCGCTCCAGAACA
ATTTTATTTAAACTACTCAGTAAATGATAGCCACCGGGGTTGTTTTATCA
GGTCTGAATACCACACTTTCTAGTATTTTTCTCTAACATCTAGACATCAT
TTGAAAGTTTCATTAAAACAAATGTAAACGCAGGTAGATAGGCATCACTG
AAGGCAGAGAGCAGGGTCGGCCCCAAAGATTAGAGTAATACTGTAGTCGG
CCCTGCTTGGAAAACCGCGCGGTAACCACGTCAGAACAGGTTATTCCTTC
CAGGATCTAGATACCATCTCTAGCTACCAGCCAAGTATACATACATATAT
ACATTATGTATGTATATCAGCCATCAGCATCAGATGTGACATTAGTATGC
GCGGTACAGCTCCATGCGTCACTCGAGATGTCGAAAATTCCGCAGTACCT
CTGTAGTTACTAACCTAACGTAATGTTTGTGAACTGACCGGTATTTGGTT
AGGCCTAGTTTTATGGGGATGAAAGACTATGGAGGGATTTTTACTTTACA
AAAACCACCCTGGTGGCCACCCTCAGCATCGAGTCTTTTTAGTAGACTTG
ATCCAGAGCCATCACGGTGCAACGCCTGTTACGGCACGTCCTACGTCCTA
TAATACAAGTATTATATTCCTTTTTAAGGGGGGAAAATCATCAAATGTCT
TCTCCCATCCTGGTTGAGGCGAGAGGGAGTGTCAACTGACTAAACACCAC
CCCGTTCCCACTCCTGCTTTTCGAGTCAGAGCCCCGGTAAACCCGCTAGC
TAGTCCGCAACTTATGTATTATATTCCTATTGCACTCCTTTGGCTAACTG
TAATGGTGTAATGTCTCGTTTGTTATTTACCATACGAATCTATGCTTTAC
TAATTAACGGAATATTTTTCTTGGAATATTCGAAAGTGCCTGTATGACGT
ACTTGGAAACTTCCTAACTTTCGGTTTCAATTTACAATGGACCTAATACT
GTTATTGTAATCATATTTGTATAAAAAACATTTTCCTAGTATTCTTTCGA
CGACCGACGAGTTTAAACGGCTCTCCTGAACATTTAATTTTTGTCGCTTA
TACCCTATTTCCTTTTAACCGTCGCTATATTACGATATGTTGACATTGAC
ATTGCGCTGACTACTGACTGACTACACGGTCACCATGTCCTCCGTAGAGG
CTGGGAGGCTGAACAGCTGACAATCGCGGGCTAAGGTCACTTGCACAGTG
GCGCCACCTCTCGACACTCACATTGTATTCAGCTGTTCCCAAGGGTATGT
CTGTCCTTGTCTGGTCGTACGACCTCGGCAGAGACAGCATAATGGTTGCC
TGTCCGACATGAGACGACTTAATCAGAATATTATCTTTGTTATAATCTTT
TTTTAATTTTGAGCTAAGGCTACTGAAGACTTTTTGGGTTAAATGCCACG
TTGTTGCTGTATTCAAACATTTTAGACATTTTCTATTGGATACGTGTCGA
TTCCCGCACGGAGCAACTCTTTGTGTGACCCATAATTTGTTCCTTCGGGT
CTGGGTGTGATGTGTATGTGAACTTGTATGTTTGTAAACGCACCCACGAT
ACAGGAGAAAATACCAGTGTAGGGCAATGTTTTTGAAAAATGTCAGGAAC
CAGTTATTACAATGTAATGTTTCTAGTAGTTCCGATAATGGTTATGATGT
TCTACTGATTGAACAAGCATTGCTGATTGCTGGATTACCCAGCAATCAGC
AATGCTTGTAGCATGTAGGTACCATGCATTGAACCAATCAGGTATTTTGT
CAAACATGGGTAATCTAATCACATAGAGGTGGTTAATGCTGAAGTACGAG
GCGATTACTGACAAGTTCATTCTGTGAGTTCATTAAATTAAAATGTAGGA
ACTACAGCTTGATAACAGTGTCAATTATTAGAGAACAGAGCCCCTTCAGT
ATAGTCCTTGTCTTCGTCATAGTCTGTGACTCATACACCTCGATCAGCTC
TTCTCATCATACCACTGCCAGCCACCTTGCGGATATCGTCACTCCATCAA
TAGCTGAAAGACACTAAGTTTGCGTAGACGCGGTCTCCAATCTAGTCCAC
GTTACGTCTACCCCAACATCTATTGGTTCTTCTATACTATTATACTTTTA
AACTATTTATTATTATAAAGCTGAAAAGTTTGTTTGTTTGTTTACTTGTT
TGAACGCGCTAATCTCCGGAACTACTGGTCCGATTTGAATAATTCTTTTT
GTGTTGAATAGTGCATTTATCTAGGAAGGCTATAGGCTATAAAACATCAC
GCTTTGACCAATAGGAGCCGAGCAGAGCGGGTGAAACCGCGCAGAAGTAG
CTAGTTGACAAATATGACCGGCCTTCAGCTTACTATTCCTTTGGGCTGTA
TCGATAACTTTGGTTCTCTCTCGGATCACTTCGTTTTGGATCTGACCCTT
TAAAGAGACTGATAATTGACAATGAGTATACATTTCATACAAAATATCTA
CGTATGAGTTTGTTATGAAAGAGCTATTTCTTTCACTGTCTCTGTCGCAT
CGTGCTTATTTGTGAACCACTTTATACAGAGTAGAGTCAATGTTTGATTA
ACTTCTTTATGTTCCCAAATTGAATTAACTGGTCCGGGGTACGAAATTTC
CTCACTTTGAGGGGGGAAAATCATCCAATGACTTCTCCCGCATTGGGCGA
GGCGAGAGGGAGTGTCTGACTCTTACTGACTAAAAACCATCCCGTTGCTA
CTCCTGCTTTTCGAGCCGGAGCCCCGGTAAACAAGCTAGGTAGGCCGCAG
CTCTATTATACCCATATAATGGCAGATACATTTAGAACACCTGATATAAT
ATAGTGTAACTCCTTTAATTAGCACGGTGTACGTGGTGTCGCAGCTAATC
AGTCGCGTGTCCTCATAAAGCCCGTTCACACGACACCACATTCATCCACC
ACACCGCGCGGTTCCCACGACATTGGCTGCGCGCGAGGCTGTCTGGGAGG
ACATTACTTAATGTTATATAACGCGTGTTACAAGATATAACTACATTATA
ATGAGGCTGCTACACACTCTGAGCTGTTGGTTTAAGATCTAATTTGGCAG
TTTCAAGTCCGGAAAATTGGTCAGCTGACAAAGAACTGTCGCTCGATAGT
CTACCAATGATCTTATAAGCTTGAACCTTTTAATTTAAATTACAGTCTCC
AATAAGCCTGCCATGCGCAGATTTTATATCAAACGAGGAGGTCCATAGAC
CAGCCAGACTTTTACAACTCATACTAAACTTCTATAATTGCTGATGACAT
GTTGTACTGACCGCTACAGTCATAGGATGATGGTTCTTTATACATCAAAT
AACAGGATTTGCAGTTTGTTATCTATAATATCTATAATATAAAAATAAGT
CGGGTTTTCCTTCCTGACGCTATAACTCCAGAACACACGAACCGAGTTCC
GCGGTTTTGCATTCGTTGGAAAGGTCTCGGGCTCCGTGAGGTTTGTAGCG
AAGAAAATCATTGGTGGCGAAACGGAGTTCGCTAGTGGGTTTGCTAGTAC
TCAATAGATGAATGAATGTATATTGTGTAGGTACTTAATTTAGTCTTCTA
TGCAAAAACTGACTTACTTACGTACAGACAAAGTCAAACCGTTTAATCTG
AATTGGGGCTATAAATACATGCGACGGCTCAACCTGCCGCTCGTTGAGAA
AAACTGAACAGTCCGCGTTTAAATGAGACTCGGATTAATTACCGCTAACT
CACTATAATATGTTTTTTACTGCAATCCGCGCCGTGTTAATTACCGACAC
TTTACTAAGAGAGTATTTTAAGTTCAGCCATTAAGTAGTTCGTGACGCGT
TCAATGTGATATTTGTTACATTGGCTAATGCCCGAATACTCAAACGCTAC
TCAATTTTAAGACGCTCTCAAATGTAGTTCTGTCGCTATCAATACTTTAT
AAAATGACAAAGACAGCACGATATTTAAGTACTTTTTTTACATTTAATGG
GCCGACGTTTGGCCGCTATCTCGCCTGATAGTAAGTGATGATGCGGCCTA
CGATGGAACACGTCTGCCCATAAGCAACCTATTCACTCGGGCTTTGAAGA
CACCCAGGTTGTACCCATCAGGAAACACAGACTCCGGCAAGGAGTTACAC
TCCCTAGCAGTTCAACTTAAAATTACAACTTAAAATTGAGTAGCGTTTGA
GTATTCGGGCGTAAGTAATGTAGGAAGTGTGCGACTGTGACGCTCCTGTT
ATCTCGGTAACTGCCCATTGTCTGCGAACACAGTTTGGGAATTAAACTTG
ATTCAATAATATTAACTGTAGTGCCTGCATTTGTATTCTGATCGTGCAAA
GAGTTTTACGTTTATATGTTTCCTGACAACTGTACGTTATCTTCAATCAA
TGTTCCAATACTTATGAATGAGATAGAAGTTACATAAGTGCGTTAGGATC
GTAGTAGGTCCAGAGCTGCGGACTACCTAGCGGGATTACCGGGGCTCCAG
CTCGAAAAGCAGGAGTAGGAACGGGGTGGTTTTTAGTCAGTAAGAGTCTG
ACACTCCCTCTCGCCTCGCCCAAGGCGGAAGAGATCATTGGATGATTTTC
CGCCCTTAAAAAAGGATCGTAGTATGTACTAGGTGATGTTCTGTATGTTC
TGTATACAATGATACAAAGGCGTGAATTTGTACTAACTCAATACCAATCA
CAGACTATGTAACTTATTTACGTGTAGATCAGTTTCCGATGCAGTCTGTT
AAAGGTCGCAACACTTACAACACATCGATTGTCTCCGATCACATCCGCCA
TTTTGCAACGCCGTTACACATCACACCGCATCAGTAGACAGTTACTCAAT
GATTATATGTAACAGAACTAACAGATAGATGGCAGCAGTGTTGCAGGGCT
ATTAATTACCGTTTACAAGATACGCTGATTGCTATATAAACACTCAAGGG
CCTAATTACTCACTTCTCACGGCTGTTGACATTAAGTAGTGTGTAAGATT
CGTAGCAATTGGCGGTCTATTGTCTCTGCCTGATCTGCCTTCCCATGGGA
GACAGGCGTGAGGTTATGTATGTATCTATAATATAAAAATAAGTCGGGTT
TTCCTTCCTGACGCTATAACTCCAGAACGCACGAACCGAACGCACGAACA
GCAAAACTGTGGTATGAGCTGTCGTCGGCGGTATTTCCGATACGACCTTC
AAAGCTTCAAGAAAAGAGCATACTCTTTTTTAAAAAGGCCGGCAAATCTG
TAACGATTAATAGACGACCTGGCAAAGGTCGCAGACAGCTCCTGGACACA
GGTCATTTCCAACCAACCGATGTGTAGTCATTGGGGGAGGACTGCGTAAA
GCATTGGACGTCTTGCAGCTATATTAATAATGTGTTGTATGTTTGCAGTG
GCGCTACGCAACCTGGGTGGAGCGGGCGGTGTCGCTGCTGGGCGCGCTGG
TGGGCGTGCTGAGCTCGCTGGGCACCATCGCCGGCATCGTGCTGTACGGC
GAGCTGACGGCGCTCTTCGTGCGCAGGCACACCGCGCAGCCCGCGCCCTC
AGACATCTACGTGCTCGCGTTCTTCGGAGGGGGGCGACATCTGTACGTAT
ATGCTACTGTAGTGACAGATATTTTAATTATAGAGATTCTATGGTTCTAC
TGTTGCATGACCAGCACTTTGGATATAAGTTTTTAAACTGACATGGTCAC
TGATACTAACATTAGATAAGAGGGGATATTTACTATGTTTATGCATATCT
ATAAGTTCATCCGTGATCATGGCGATCTGAATCTGAAACTCATAGACATA
GATAAACATGGGTTTAAGTGTGGGAGAGCCATGCTTCGGTACGTATGGGC
CGGCTCGACCGGAGTGATAGAACGCTTGCGTTGCGACAGAGGCCCAATTC
CCCCCTTTCCAATCCTCGCAATCCCCGATTTCCGAACAACAACCGTTAAA
TTCCTAACCCCCAAAAAGCCGGCAACGCACTTGTAATGCCTCTGGTGTTT
CAAGTGTCCATGGCCAGCGGCGATTGCTTACCATCAGGTGATACGTCTGC
TTGTTTACCGGCATGGTAAATATTATCCCGTCTCAAGTTCTAATGTTAAA
GCACTTTGGAACCCGCAATTTGTTATTTGGTAACTTATATGGTATAGATT
ATGTTGTATGTCAACATATTTGAACAAACATCTGTTCCAGGCCCGAGGGC
AATAGGTCGCTGCACATGGACGCGCTGCTGGAGGACAGCGCGGCGTTCGC
GTGGGCCAGCGCCGCCGTCATAGCGTTACATATCCTCAGCGCCGCGCTCG
CAGTCGCGCTGCTGCAGTGGGCCTCCGCCAGGATGGTGAGTGCTCCCGCA
TTGTATACTCCGTGTTATTGTAGATTTAGATAGTTACTTACATATTTTGT
AAACGCATGTCCTAGCTACTAGCTTACGCTGATGGTGAGCACTCCCGCCT
GCATACTCCGTGTTATTGTAGATTGTTGATGAGTTACTTACATATTTTGT
AAGTCCTTCACTTAGGTACTAGCTGACCCTGAATTTCCTCTATATGTCAT
GAGTTGCCATAACCTCCAATCTCCACTCTTGGCAGATAGGTTGTAGGATC
ACAGTATAAAGCTTTAAAAGCTTTTGATTTTTGCTGAATACTGTCCCTTA
GTCAGTTCATATGACACCCGCAAGATGAGTATTGGTGGTCTAATGTATTT
TACTCTGCTGCCATAACACGATAAATAAATTTTATATTTTCTTAATATAA
TGAATGATTCCAGGTGACGCGGCTGCGCATCCGGCTGCTGCGCTCGGTGA
TCAGCCAGGAGATCGCGTTCTTCGACACCAACACCGACATGAACTTCGCC
ACCACCATCACCGAGTGAGTCACCGCACTACTGTACATTGTAACTGTCAT
TGGTTTAGTACCGGAAATTAATAATAGATGGCGTTGTTATTATAAATCGC
AGTGCCAAGATTCTTTGCTAAATATGATCTGAATTCTTTTTTCATTTGAT
GTGTGAATGTTATTTTACTTTTAGTCAGCGAAGTTTTAGTTTTAGTCTCT
GAATACCTTCCATAAGGTACAAGGGAGTGAAACTTTTACAGAATTTTCCA
AATTGTATGGCTTCTAACATCCTGCTATAAATTGCAGGGACATGGAGAAG
TTCCGGTGCGGGGTGGGCGAGCACGTGGCGATGACGGCCAACCTGGCGGG
CACCGTGCTGCTGGGCGCCGGCCTGGCGCTGCACTACGGCTGGCAGCTCG
CGCTGGCCGGGCTCTCTGTAGTCCCCGCTGCGCTCGCCGTCGCCGCCGTC
GTGGCGCGCTACCAGACCAAGTGCAACGCGCGTGAAGTATCGGCGTATGG
AAGTGCAGCGCGCGTGGTTGAGGAAGCGCTGGGCGCCGTGCGCACGGTGC
GCGCGTACGGCGCCGAGCGCGGCGAGTGCGCGCGCTACGGCCGCGCGCTG
CGCGCTGCGAGTGTGGAGGCGCGCGCGCGGGCCGCGTGGGCCGGGGCGGG
GGCCGGGCTCGGCTGGCTGCTCACGTACGCGCTCAACGCCATCGTGTTCG
CGTACGGCGCCGAGCTGTGCGTGCGCGACATGGGGCTCGAACCCGCGCTG
CAGCAGTACCACGCCGGCGTGATGGTGACCGTGCTGTTCCTCACGTTCAT
GGCGGCGCAGAACATCGCCATGTGCCAGCCGCACCTCGAGACCTTCAGCG
CGGCCCGCGGCGCCGCGCGCAGTCTCTACCGCCTGCTGCAGCGCCGGACC
AGGATCAACGCACTCGACTCCACGGGAATCAAACCCGACAAGTTCCGCGG
AGATATTACGTTCGAGAATCTCTACTTCAATTATCCTTCGAGGCCTGATG
TCAAGGTGAGAACATAGTTTTAGTTTTTTTATTTTACATATCAAATCAAA
TTTTATTTCAGAATTGCTTCCATAATTTGTTAGTAACAATGTTCTTAGTC
ATTTAGATTTTAATAGAAACCCAATACTTCAAAAATCGACGTCTATCCAA
ACATTATATTCCGCAGGTCCTCCGCGGTCTGAGCCTGCGCGTGCGCGCGG
GGTCGAGCGTGGCGCTGGTGGGCGGGTCTGGGTGCGGCAAGTCCACGCTG
CTGCAGCTGCTGCAGCGCCTGTACGAGCCCGACTCGGGGACCATCACCGT
GGACGGACACCCGCTGCACGCGCTCGACCTGCATCACTTCAGGAAGAGCA
TCGGTACGGCCATACTGCTCTAATGTTATACAAATTGGACTTTACTGTAC
TACCTAAAGGCTCTAGGCTACTGACTAAAGGCTCTACTATAACTCTCGTG
TCGAAGAAAGCTAAATTTTATTTATCCCAATACGTCTTTTATTCCCAAAT
TGCTAACACAGAGGTACACATACTGGCACGTCCATTTTTCATCAGTAATG
TTACCAGACCCATGTAATAAGGAGTTGCGTCTATTGCCATATACTGAACA
CATCTCCTAACTCCATGACCTTGTTACTACTAATCGAAAAACTAAAAACA
TCGCAATAATATTTAACCAGACCGAGGAATTGACACTGAGAACCCCTTTA
CTCAGCCGTCATAGTTGTGACTTTGCGACTATAATATAAATTAATTATTA
TGTTATCGGCATATACACACGACGCTGCGATTGTCGCGTAATGCTGCTCA
TGAGTATGAGCCTCTAGCATGGCTTGAAACTAGTCGAGTTCCTCGTCAAA
ACATTACGTGAGTAAGCCGATAACATAATAATTAATTTAGTATGTCTCAC
GAAAGTTACAATAAAATTATAATATTAATGTTTACATTGTTTCCTCAGGA
GTGGTAGGACAGGAGCCGGTGTTGTTCTCTGGTACCATCCGGGAGAACAT
CACGCTGGGCATGGATGACGTCACCGACGCCGACGTCATCGAGGCCGCCA
CCACCGCGCACGCGCACCAGTTCATCACCAAACTTGCCAATGTAAGTACA
CATATTCGTGACAAGTTGTCGGTACTCAATCAATAGATGGCGTTAGTGTC
GAGTTAGGTCGTGTAACTGTTGTAGTGTAGTTTAGTAATTCAAAGTCAAA
GTCAAAGCATTTATTCCAATTAATCCTAAATTAGGCACTTTTGAAACGTC
AAATTGAATTGTCTGTCAGTTTGTCTGTCAGTGAAGCTAGGCGCTCGTTC
CAAAGTGTTGCTTCGAATGGAGAATAACGCGCAAGAAACTCCATCGTTAC
TCTTTTTAAAAAAATGATTTGTCAAGACCTTTAATCTTCCTTCCTATCAT
TAGAACCTAATACTAAGGGATTACTTTTATCTATTTTGATAAATCTGTAT
CTTTTACTCTGAGAGTTAAGTAACCATTAAGGCATAATGTCTCATGACTC
GTTATTTGACGACTGCATATAGCCGACAAATGACGATAGACGGCATACAA
TTGCCGCTTCGTGGACAGTTTTCATTGTGTCTGAGCAACATTTGTAGGTT
GCATGCATTCATTAAGTCTTTGACTGCCATCAAAAACCTGTTGAAGGCAA
ATCCTCCGCTAACGTCGGTCACCGGTAACTACCACGGTGTTCAAAGTGTT
AACTGACCTAATGACCCATCCCTCCTTAGGGTTACGACACGCTGCTAGGC
GCGGGCGGGTAAGCCTTAGTGCCATGACTTGTCATATGACGAGTGCTTAC
AACCTACAAATGACGATAGATAGTCTATAACTGCCGCTTTATGGACAGAT
TTCATTGTTTCTGAGCAACATTTGTAGGTTGCATGCATTCGTTAATTGAC
GCGTCATTGTCCTAAATGAGTCTGAGTACGGTTAGTAATGTTTATCCTCT
CCCTTAGGGTTACGACACGCTGCTAGGCGCGGGCGGGTCCCAGTTATCAG
GTGGTCAGAAGCAGCGCATCGCGATCGCGCGCGCCATCGTGCGGCGGCCG
GCGGTGCTGCTGCTGGACGAGCCCACGGCGGCGCTGGACCCGGCCGCCGA
GCGGGCCGTCGCCGCCGCGCTCGCCGCCGCCGCCACCGGCCGCACCACGC
TGCAAGTCTCGCACCGCCTGCAGGGTACGTGGTTAATAAACTCTTTATTA
AAACTTCATCTAATTTGGGTCAGTCGATTGCGAGATAATCGCGGACAAAC
ATACATACATACATACACATACAGGTAAAACTGAGAACCTCCTTTTTTTT
AAATCGATTGAATAAAAGTTTCTTGTCAATAATAATATGTTGAACAACAT
TTTGTACACTAGACATATGAGTGTGTTGCTTAGTAACTATGAACTTATTC
GATTCATTTCGAACTAGGACAAAGATCCATATTTAGAAACACACTTTTCC
ATGCTCATCCTCCATCCAATATCACGTTGAGATGTATAAAATTATAGTCG
AACAAATTCTTGTTCTACATGATTCTTGATGAGTATAAGTCCTATTATCC
AATTGTCATCCATATCCTTGTAGTTATTACAATAATATTGTTATTATACG
TAGTAACATGTAATATTAAACGCGGCAGGTCTGTCGGGGCACCACATCGT
GTGCGTGGAGCAGGGCGCGGTCCGCGAGCACGGCTCGCACGAGGAGCTGC
TGGAGAGACGAGGGGTCTACTGGGCGCTGCTGCAGGAGGACCTCACCACC
AAGTACGTACACTCACTATATCACACTCTGGTACATAAAGCTAATACAAT
ATAATGTCATAACTGGATGTCCCTTTCCAACAATGCATGACCCTTTACGG
GGAGCCCCCCTATATACTATCTAGCTCACTATTGTCCGAATACTCAAAAG
CTACTCAATTTTAAGTCGCTCTCAAAACTAGTTCTGTCCCTATCAATTCT
TTATAAAATGACAGAGATAGCACGATATTTAAGTACAACTTAAAATTGAG
TAGCGTTTGAGTATTCGGGCGTATACCAGACACACTCGGGCACATGAAGC
TAATACAAAGAGATGTTACGGGGAGCGCCGGCCGTTACAAACCGCGCCCC
TCTCAATATCCCACATAGCGGTCCCATACTAGAAATATGTTGCCAATTTT
ATTTTCCACATTTTAATGTGACACTTTCAGAGCGTTTATATCCTATGTAC
AGCTTTTTACTTACAATAGTTAACTTTTCGAGGGTGCTCGACTAATTACA
AACGGCATCAGGTACTATACTACACACACGTTGCCAATTGTCCACATTTT
AATGTGGACACTTTCTGAGTGCTTATAACCTATCTACGCCTTTTTACTTA
TATGTAATAGTTGAATTTTTTGAGAGCGCTCGACTAGTTTCAAGCGACAC
CGGAGCTCATAATCACGTCTGTCTATTCCGTAGGAGTGTGAACGTGATGA
ACTCGGAGCCGATAGAGGAGGACGACGACGATGACGTCACTGCTGCTGAC
GATCACACCCACTTCAAGAGGGGAGTCAGTCGACAGTCCGTTAGAGGTAT
GTACTCATGTGATGTTGTAAAAAAGTCTTCAAAAATCTTTAAACTTATGG
AAACATGACTGTTGCAAGTTGATTTTTTCAAAAACTGCCTATCGCTAACA
TCAGGTTTCTTTAACCCTAACGAGTAAATTTGACGCAAATTCTGTAATAA
ATAGGAATTTATAACAAAGCCTATATTTAATTTTACATTGTTCTAAAAGT
TTGGGTCAAAGTTACCCCTCAGAGTCAAAGAAACCTGATCTTTCAATGTA
GATGAAGCGAAAGAAGTACTTTAGCACTGTCTAGCACTGAACACTAGAAC
TGGGGGGAGTTACTAATCGTGGCAAACTGAGTTGTAAGTACTGTAAGTCA
CCTCTTACGTCGTCAGTTCGACTCCCACTCATGGCTACCATTTCCCATGT
ATATTCAGTGTTGTAATGTCTGTCTGTCCGTACAGAGTCGTCCCGCCACT
TCGTCCGCAGCAGTATCCGCATGAGCTCCGTGTCGGCGCATATACCACAC
AGCGCGCTCTCGCAGATTGTACGTATACTACTGTACTACATACCCGTTAC
AATGGAGGTGTTGGTAATACGTTACCTACTGAATCAAATAACCTCACATA
TACAATACAAATATTGTTTCTTTAAACAGAATATAGATATAATGTTGAGT
GTATCAATACATTGCTTGGATCTGTCAAAGGCTTTTGATACTATAACTAG
TCATAAACGAACAAATTGAAAAAAAAAAATCATTCGAATTTCATTTTTCT
TCGCGACACGTACTTTAGATATGTTTAAAGATGACAATGAGCAGTCATTA
ATCTACAGGATAGTTGTTCGAATGATGTAAACTATTGGTTACTTGGCGTA
CCGCAAGGTACTGTGCTTGGTCCAACTATGTTTAACATAATGACACTGCA
AATACACACTTATCACGAAGTTCGAGCACATATTACGCTGTCAAATGTTT
GAAATAATTCTTTTAACATATCTACTAATCTATATTTTGTTCGGGGCTAG
TCTGTCTGTGAGACCGTATAAGCATTGCCTCTACTATGTCTAAACATACA
ATATCCCTCACTCCAGGACACAGAGGACGTGGAGGACCCTGTGGAGGCCA
CGGAGGAGGAAGGAGAGGACGCAAGTCCCTCAGTATCTAGCTGGGAGCTG
CTGAAGCTGAACGCGGCGGAGTGGCCGCAGCTGCTGGGGGGGGCGCTGGC
GTCGCTACTGGTGGGGGCCACCATGCCGGTGTTTGCTTTACTGTTCGCTG
AGCTATACGGGGTGAGTGGTACATTGTACTGTGTCTATACTTTTTTTTAA
GGGGGGGAAATCATCCAATGGCCTCTCACGCAAGGACGAGGGGAGAGGAA
GTGTCAGACTCTTACTGACTGAAACCACCCCGTTCCTACTCCTGCTTTTC
GAGCCGGAGCCCCGGTAA
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Coding sequence (CDS) from alignment at SFRU_RICE_006488:11801..25368+

>SFRICE013838-RA ID=SFRICE013838-RA|Name=SFRICE013838-RA|organism=Spodoptera frugiperda rice|type=CDS|length=2448bp|location=Sequence derived from alignment at SFRU_RICE_006488:11801..25368+ (Spodoptera frugiperda rice)
ATGTCTTCTTCCGCCTTGTGCGAGGCGAGAGGGAATGTCAGACTCTTACT
GACTAAAAACCACCCCGTTCCTACTCCTGCTTTTAAAGCCGGATCCCCGT
GGCGCTACGCAACCTGGGTGGAGCGGGCGGTGTCGCTGCTGGGCGCGCTG
GTGGGCGTGCTGAGCTCGCTGGGCACCATCGCCGGCATCGTGCTGTACGG
CGAGCTGACGGCGCTCTTCGTGCGCAGGCACACCGCGCAGCCCGCGCCCT
CAGACATCTACGTGCTCGCGTTCTTCGGAGGGGGGCGACATCTGCCCGAG
GGCAATAGGTCGCTGCACATGGACGCGCTGCTGGAGGACAGCGCGGCGTT
CGCGTGGGCCAGCGCCGCCGTCATAGCGTTACATATCCTCAGCGCCGCGC
TCGCAGTCGCGCTGCTGCAGTGGGCCTCCGCCAGGATGGTGACGCGGCTG
CGCATCCGGCTGCTGCGCTCGGTGATCAGCCAGGAGATCGCGTTCTTCGA
CACCAACACCGACATGAACTTCGCCACCACCATCACCGAGGACATGGAGA
AGTTCCGGTGCGGGGTGGGCGAGCACGTGGCGATGACGGCCAACCTGGCG
GGCACCGTGCTGCTGGGCGCCGGCCTGGCGCTGCACTACGGCTGGCAGCT
CGCGCTGGCCGGGCTCTCTGTAGTCCCCGCTGCGCTCGCCGTCGCCGCCG
TCGTGGCGCGCTACCAGACCAAGTGCAACGCGCGTGAAGTATCGGCGTAT
GGAAGTGCAGCGCGCGTGGTTGAGGAAGCGCTGGGCGCCGTGCGCACGGT
GCGCGCGTACGGCGCCGAGCGCGGCGAGTGCGCGCGCTACGGCCGCGCGC
TGCGCGCTGCGAGTGTGGAGGCGCGCGCGCGGGCCGCGTGGGCCGGGGCG
GGGGCCGGGCTCGGCTGGCTGCTCACGTACGCGCTCAACGCCATCGTGTT
CGCGTACGGCGCCGAGCTGTGCGTGCGCGACATGGGGCTCGAACCCGCGC
TGCAGCAGTACCACGCCGGCGTGATGGTGACCGTGCTGTTCCTCACGTTC
ATGGCGGCGCAGAACATCGCCATGTGCCAGCCGCACCTCGAGACCTTCAG
CGCGGCCCGCGGCGCCGCGCGCAGTCTCTACCGCCTGCTGCAGCGCCGGA
CCAGGATCAACGCACTCGACTCCACGGGAATCAAACCCGACAAGTTCCGC
GGAGATATTACGTTCGAGAATCTCTACTTCAATTATCCTTCGAGGCCTGA
TGTCAAGGTCCTCCGCGGTCTGAGCCTGCGCGTGCGCGCGGGGTCGAGCG
TGGCGCTGGTGGGCGGGTCTGGGTGCGGCAAGTCCACGCTGCTGCAGCTG
CTGCAGCGCCTGTACGAGCCCGACTCGGGGACCATCACCGTGGACGGACA
CCCGCTGCACGCGCTCGACCTGCATCACTTCAGGAAGAGCATCGGAGTGG
TAGGACAGGAGCCGGTGTTGTTCTCTGGTACCATCCGGGAGAACATCACG
CTGGGCATGGATGACGTCACCGACGCCGACGTCATCGAGGCCGCCACCAC
CGCGCACGCGCACCAGTTCATCACCAAACTTGCCAATGGTTACGACACGC
TGCTAGGCGCGGGCGGGTCCCAGTTATCAGGTGGTCAGAAGCAGCGCATC
GCGATCGCGCGCGCCATCGTGCGGCGGCCGGCGGTGCTGCTGCTGGACGA
GCCCACGGCGGCGCTGGACCCGGCCGCCGAGCGGGCCGTCGCCGCCGCGC
TCGCCGCCGCCGCCACCGGCCGCACCACGCTGCAAGTCTCGCACCGCCTG
CAGGGTCTGTCGGGGCACCACATCGTGTGCGTGGAGCAGGGCGCGGTCCG
CGAGCACGGCTCGCACGAGGAGCTGCTGGAGAGACGAGGGGTCTACTGGG
CGCTGCTGCAGGAGGACCTCACCACCAAGAGTGTGAACGTGATGAACTCG
GAGCCGATAGAGGAGGACGACGACGATGACGTCACTGCTGCTGACGATCA
CACCCACTTCAAGAGGGGAGTCAGTCGACAGTCCGTTAGAGAGTCGTCCC
GCCACTTCGTCCGCAGCAGTATCCGCATGAGCTCCGTGTCGGCGCATATA
CCACACAGCGCGCTCTCGCAGATTGTACGTATACTACTGTACTACATACC
CGTTACAATGGAGGTGTTGGACACAGAGGACGTGGAGGACCCTGTGGAGG
CCACGGAGGAGGAAGGAGAGGACGCAAGTCCCTCAGTATCTAGCTGGGAG
CTGCTGAAGCTGAACGCGGCGGAGTGGCCGCAGCTGCTGGGGGGGGCGCT
GGCGTCGCTACTGGTGGGGGCCACCATGCCGGTGTTTGCTTTACTGTTCG
CTGAGCTATACGGGGACGAGGGGAGAGGAAGTGTCAGACTCTTACTGACT
GAAACCACCCCGTTCCTACTCCTGCTTTTCGAGCCGGAGCCCCGGTAA
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Synonyms
The feature 'SFRICE013838-RA' has the following synonyms
Synonym
SFRICE013838-PA
SFRICE013838
augustus_masked-SFRU_RICE_006488-processed-gene-0.0-mRNA-1