GSSPFG00018312001-RA (mRNA) Spodoptera frugiperda corn

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGSSPFG00018312001-RA
Unique NameGSSPFG00018312001-RA
TypemRNA
OrganismSpodoptera frugiperda corn (Fall armyworm - corn variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15277contigscaffold_15277:164..5962 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda corn annotation OGS2.22015-12-04
Properties
Property NameValue
Full nameGSSPFG00018312001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
GSSPFG00018312001GSSPFG00018312001Spodoptera frugiperda corngenescaffold_15277 164..5962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00018312001-RAGSSPFG00018312001-PASpodoptera frugiperda cornpolypeptidescaffold_15277 164..5962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00018312001-RA-CDSGSSPFG00018312001-RA-CDS-1Spodoptera frugiperda cornCDSscaffold_15277 164..279 +
GSSPFG00018312001-RA-CDSGSSPFG00018312001-RA-CDS-2Spodoptera frugiperda cornCDSscaffold_15277 2063..2252 +
GSSPFG00018312001-RA-CDSGSSPFG00018312001-RA-CDS-3Spodoptera frugiperda cornCDSscaffold_15277 2888..3033 +
GSSPFG00018312001-RA-CDSGSSPFG00018312001-RA-CDS-4Spodoptera frugiperda cornCDSscaffold_15277 3634..3872 +
GSSPFG00018312001-RA-CDSGSSPFG00018312001-RA-CDS-5Spodoptera frugiperda cornCDSscaffold_15277 4989..5242 +
GSSPFG00018312001-RA-CDSGSSPFG00018312001-RA-CDS-6Spodoptera frugiperda cornCDSscaffold_15277 5756..5962 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00018312001-RA-exonGSSPFG00018312001-RA-exon-1Spodoptera frugiperda cornexonscaffold_15277 164..279 +
GSSPFG00018312001-RA-exonGSSPFG00018312001-RA-exon-2Spodoptera frugiperda cornexonscaffold_15277 2063..2252 +
GSSPFG00018312001-RA-exonGSSPFG00018312001-RA-exon-3Spodoptera frugiperda cornexonscaffold_15277 2888..3033 +
GSSPFG00018312001-RA-exonGSSPFG00018312001-RA-exon-4Spodoptera frugiperda cornexonscaffold_15277 3634..3872 +
GSSPFG00018312001-RA-exonGSSPFG00018312001-RA-exon-5Spodoptera frugiperda cornexonscaffold_15277 4989..5242 +
GSSPFG00018312001-RA-exonGSSPFG00018312001-RA-exon-6Spodoptera frugiperda cornexonscaffold_15277 5756..5962 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>GSSPFG00018312001-RA ID=GSSPFG00018312001-RA|Name=GSSPFG00018312001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=1152bp|location=Sequence derived from alignment at scaffold_15277:164..5962+ (Spodoptera frugiperda corn)|Notes=Excludes all bases but those of type(s): exon.  
TCAAAGATAATTCTGCGCAGCATCAACGGTGACTTTCGATCGGGGCAGCT
GACTGCAATCTTGGGTCCGTCAGGCGCTGGCAAAAGTACATTACTGAACA
TACTAGCTGGATATAGGGTAGCAGGAGCGTCAGGAACAATCTTCACCAAT
GGCGAGCCCCGAGACTTGCATCAGTTCAGGAAACTGTCCCGGTACATCAT
GCAGGAGGACTTGCTGCAGCCGTACATCACCGTACAGGAGGCCATGATGA
TAGCTGCCGACCTGAAGCTGGGCAACGGGATCACTAAGGAGAAGAAGCTG
GTTATTGCCGAAGAAATTATTCAGTTATTAAGGCTACAGAAAGCGAGGAA
TACGGCGACGGAGAGGCTATCAGGGGGCGAGAGGAAACGAATATCAATAG
CTTTAGAACTACTCAACAACCCACCGGTTATATTCTTGGATGAACCTACT
ACAGGTTTAGATGACGTAGCCTCTTCAACATGTGTGTCACTCCTCAAACG
GGTGGCTCGAGGAGGGAGGACGGTGGTCTGCTCCCTCCACACTCCCTCAG
CTCGTTTATTCGCCGAGTTTGACCATGTATACGTGGTGGCAGGTGGCCGC
TGTGCCTACCAGGGAACTGCTCCAGGGGTCGTGCCCTTCCTCAAGGAGCT
GCAGCTGCCTTGTCCTAAGACTTATAATCCTGCTGATTTTATAATCGAAG
TATCGAGTGGCGAATATGGATCTCACGTAGACAAAATGGTATCAGCGGTG
GAAAACGGGAAGAATCAGCGATGGAGGACGTATGGCATTGAGGAGAATCC
ATCAGGGGAACAATTTGAGGAGATGGAGATAGAACAGCTGAACGCCGGCG
GTGTTGAGAAGCATAATTACAAGCACGGATGTTCAGCTTGCCAGCAATTC
ATTGTTTTATTGAAAAGAATGTTGTTACAGACTGTTAGGAATAAGAGTTA
CCTATGGCTGCGCGTCGGCTTACATTTGTTCATAGGAGTCATTGTGGCCA
GTCTATTCAACAAGATGGGCTATGACGCTTCGAAGACTATCTTCAACTTT
GGTTTCTGCTACGCCTGTACTATTGCCATGCTTTACATTCCCATGATGCC
CGTTTTACTTGCCTGTGAGTATCTAACTGTCTTTTTAAGCAACTTCAAAT
AA
back to top

protein sequence of GSSPFG00018312001-RA

>GSSPFG00018312001-PA ID=GSSPFG00018312001-PA|Name=GSSPFG00018312001-RA|organism=Spodoptera frugiperda corn|type=polypeptide|length=384bp
SKIILRSINGDFRSGQLTAILGPSGAGKSTLLNILAGYRVAGASGTIFTN
GEPRDLHQFRKLSRYIMQEDLLQPYITVQEAMMIAADLKLGNGITKEKKL
VIAEEIIQLLRLQKARNTATERLSGGERKRISIALELLNNPPVIFLDEPT
TGLDDVASSTCVSLLKRVARGGRTVVCSLHTPSARLFAEFDHVYVVAGGR
CAYQGTAPGVVPFLKELQLPCPKTYNPADFIIEVSSGEYGSHVDKMVSAV
ENGKNQRWRTYGIEENPSGEQFEEMEIEQLNAGGVEKHNYKHGCSACQQF
IVLLKRMLLQTVRNKSYLWLRVGLHLFIGVIVASLFNKMGYDASKTIFNF
GFCYACTIAMLYIPMMPVLLACEYLTVFLSNFK.
back to top

mRNA from alignment at scaffold_15277:164..5962+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>GSSPFG00018312001-RA ID=GSSPFG00018312001-RA|Name=GSSPFG00018312001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=5799bp|location=Sequence derived from alignment at scaffold_15277:164..5962+ (Spodoptera frugiperda corn)
TCAAAGATAATTCTGCGCAGCATCAACGGTGACTTTCGATCGGGGCAGCT
GACTGCAATCTTGGGTCCGTCAGGCGCTGGCAAAAGTACATTACTGAACA
TACTAGCTGGATATAGGTAATTGACTTACTATTCATATTTTGATCGGGGA
GCTTCAACGGAACTTATGCGGCTAAGATTATGGAACGCCCAAATGCTATG
ATTCTTATATTACTACTTTCTTAATTCTTTTAACTTAATTAGCCGGTGAA
TTTCTTCAAGTTTATAAGGAACAATTCATGTAATGAAACTGAACTCAGTC
GTCAGTCGTCATATAAGTCAGTAAGAGTCTGACACTCCCTGTCCCAAAGC
GAGAGAGAAGTCATTGGATGATTCCCCATATATATATCATAGTAACACCA
TACTATACGCCATAAATACTAGCTCAGTACATAACATTTCGAGGTCTTTG
TTAATTGCTAAAGTACATTTGCGAGTACATATTTTGTTTAGCCTAGTTGC
ATCGCGTGACTGAAGATGAATATCACTGTATTTATGCAACAATGTAACAT
TTCCACGGCCCGTGATAAACTGGACTCCTCCTGTATATGAAAGGGTTTGC
CATGATATTTAAAAGATTCAGGTTTATCAGGGCGCTCTTGTTTCGTCTCT
GCCAAATATGTGTTTGGTAAAAAATACGAGAAAACAATCTAATATTTTTT
CATTACCTAACTGACGGACGAAATACATTTTATCGGCGATTATATTTTAC
CAAACGTTTTGGATGGCTCCAAAACGTTATTTCTACGAAACGTGCTTAGA
TGTGACGTCACACGATATTTCGAATCAGAAGTATATTTATATTCGTTAGA
AAAACGTTAAAAATACGTGTCTAATATTTTAAAATAATCTACAAGACGGA
CATTAAAATAAAAATATATCCACAATAGGGTTATTGTACGAGATCACATA
TTCTGAATTGATATAATTTACTATTTCAAGTTGCTCTAAATATCAAGATG
CTCTATTTAAAAAACAAGAAGAACAGTAGGTATTATTATTTTTTATGTCG
AAAGTTGAAAGGCTAATTGATCTAAACGATATTTTTACGATTAACCTTTC
AACAGTCAATATTATGTAAAGTAATATTTTTATTTTATAATCTTGTTTTG
TATCACTGATGCGTATTTGAACCCGGTGGACAAATCAATATGCATAAGTA
TGAGATTATGCATACAAAAAAAAAAAAACCAAAAACGCAATTAATATAAA
GAACCTCTGCTAGTAATAATTTTAATTAATGCGTTGCTAAATAAAAAAAA
ATGTTTGAAAAATGTTCTTGAAATTCGAGGATATGTCTTTTATAAAAACA
TACGGAAATTTTATAAAATTAACAAGATAACTGGCCTCTGGTTGATGAAT
TCTGTTTTTATATTTCCTGTATAATTGCGAAAAAAATAAAATAAACATCA
TGCATAAAATCTGCCGAAAACTGTATAGTAATTCGATTTAAACGATTAGG
GAAATTTTCCTATAATAGAAGCTAGAAGAAGTCGATAAAAAGAAATTTAA
TTTCCTTCAAAAAGTAAACAATCCTTAATGAAACATTTACCTTTTAACCG
CCTGTGTCGCATATATGCGCAAATATTTCCGTGTCCCTACCGCTCATGTC
GTATTGCTGCGACAGAGACCATGCACGATTTTTTTTTGTTCTATTCCCAC
GATTGCTCATTATCTATTATTTTTATCTACACTACAAAAAATCTAAAAAT
TATAATTATCTACTTATTTTTTTTAAATAAGCAGTATATAGTGTATATAA
TTATATTTTTTTAGATTTATATCCGCGCGCTAGGGGCACGATAATTGATA
TTCAACTGAGTGGTAAAGGTGTTAAAATATACAATCACCTCATTTACAGG
GTAGCAGGAGCGTCAGGAACAATCTTCACCAATGGCGAGCCCCGAGACTT
GCATCAGTTCAGGAAACTGTCCCGGTACATCATGCAGGAGGACTTGCTGC
AGCCGTACATCACCGTACAGGAGGCCATGATGATAGCTGCCGACCTGAAG
CTGGGCAACGGGATCACTAAGGAGAAGAAGCTGGTTATTGTAAGTATTTC
GCAATACTCGTGGAACATAATCAGTTTACGTCATCGACAGTTTCAATTGT
CATTAGTTCAATTCAAGTAATGATACAGCTAAACCCTATCCCTTAAAATA
TAGGCTAGACCTAGTTAAAGGGAAGGTGTCACTAATATTGTGCTTAGAAC
GAATAACCTATATGATTTTTTTAAACTGGTACGTACCGATCTTCACCTTG
ACTTTGCCTGTCTAGACGCCAGTAAAAATGGGAGAATTGGTATAGATTTT
ATGTTCACGTCTAAAAGCACATTGTTTTTTTCTATATTCATTCAATAATA
TTGGTGACTATGACACGTTATGTGAAAGAACAGGATAAACAGAGTGTAAA
TGGAATGCTCCAGAAAAACGCCTTATTTTTGTTTTTATAAATTTAATAGT
TTTTGTTTTCGTGCAACATCAGCCGCTGCGTTTGGGAGCGTTGCGTTTAC
TCCTGCATAAGGTACACTAGGTAGATTGATGGTATTGAAAGATCAGAGAA
GTGTAAAGTATTTAAAAAAGTTTGTACCATTTATGAGTGATAATGTTGCA
TAATTAATGATAACATTAGTATTTTATGAAACGAACAGAAATTTCATAAT
TTAAACAAACTATTCTCTTTACAGGCCGAAGAAATTATTCAGTTATTAAG
GCTACAGAAAGCGAGGAATACGGCGACGGAGAGGCTATCAGGGGGCGAGA
GGAAACGAATATCAATAGCTTTAGAACTACTCAACAACCCACCGGTTATA
TTCTTGGATGAACCTACTACGTAAGTCACATACTTAAAAAAAACCCTAAC
CCTAACCCTGTGCCATACCTACTAGATTATCTTTGCTGGTTGTGTTAACA
AACATACATACATCACACCTTAATTCGGAACAAGACAATATTTTCAGAAC
CCTACCAGGGATTTGATTATGGTATTGTGGACTAGCTGATGCCTGCGACT
TCGCTTTGCCACTAATAAAAGTAGCTTAAAGTATTCTTTAGTACATCAGT
TATCTGCCATTAAAAGTTCCGTCAAAATTAGTCCAGCCATTCCTGAAATT
AGCTAAAACAAACAGACATGCAGACAGACACAAAAATGGAAAAGAAAAAT
ATTATTTTGGTATTATTCATATGCATATAGTAGGTATATACCTATTCGTA
AAAAGCGGCTATTTCCATATTACAAACAGACACGCCAATTTTATTTATTA
GTTTAGACTAGATTTGGTTACACCAAAACATTCACACCCGCACCTGAAAC
AAACCAATTGTGGATCATACGGAAGGCCATAACGTTATGACCAAACAGAG
CCAAACAGCAGATGAAACCACACATGACTATACTTAGTTAGTTTCTAATA
ACACATTTATTTATTTTCAGAGGTTTAGATGACGTAGCCTCTTCAACATG
TGTGTCACTCCTCAAACGGGTGGCTCGAGGAGGGAGGACGGTGGTCTGCT
CCCTCCACACTCCCTCAGCTCGTTTATTCGCCGAGTTTGACCATGTATAC
GTGGTGGCAGGTGGCCGCTGTGCCTACCAGGGAACTGCTCCAGGGGTCGT
GCCCTTCCTCAAGGAGCTGCAGCTGCCTTGTCCTAAGACTTATAATCCTG
CTGATTTTAGTAAGTGTTACGTATTTTTAATGAATTTTTGATTTGGAAGA
TTATTATCTAGCAGTCGGTAGCCTAAACCTTCAAGAAAAGAGTGTATTCC
TGTTTAAAAGGTGTCCATGGGCGGCGCTGTCGCTTACCATCAGGTGATCA
TCTGCTCGCTGCTGCTTTTGCCTCCTGTTGCATAAAAAAGTATTGCGCAA
TTTCAAGGATTAATTTAAATGACTTTGAAGATTCTAAAAAAAAAAAAAAT
GTTTTAGACATAGAGAAATAAAATTATTTCAATGTGCTTGTTGTAACGAC
TATTGAAAGGATTAAAATAAGAACCAAGAAAATGTTTTAGACATAATATT
TGTAATAAAATCATTTAAATGTGCTGGTTTTAAGAACTATTCGAAGGAAT
ATATTAAAAAACTTGATGAAGATAATGTAGAAGGAATAAAAAAGATTTGA
AAAATATTCGTTTACAATAATAAAACGGTTAAGATTATTGTCATACTACA
TTTAATTAGATACTTCATATATGTGCCTACCTCTACCTACCCTTTCGGGG
AACAAAAGGCAAGTTGTTTTACCTAATTACAGTACATTACGAAGAGGTCA
CAATATGTGGAAATAAAAGAATTGCTCAATTACATACCCATTACATATGT
CATCAGTGTCATGATGATATGACAATTTGCCTGTGGCAACACTGTTGGAT
ATACGTCGCAATGTTGCCATAATTATTAACGGCTGTTTTGATTTAAAAGT
GTGTGTATGGTAGTGTATGGTCTGGATAAACACATAGGCAATTTTTTATT
TTACTGGGACGCGGGCGGAGGCGTTGGCTAGCTAAAAGTCAACTTTCTTT
ATGACAAGAAGTATAATTTATAACATCACACTTTGAAATCCTTGGATGAA
TAAGCAGAAGTGCTAAATTCCCAAATTGCGTGACTGAGAAACTTTTGAAA
AACTGAGAAACTTTTGAAACACTGACGAAACTGCAATGTCTAACCCTTTA
TCTAAATCTAGTGCACAACTTAATACTCTTCAATTGGTAGTCAGTCACAC
TAGCAACAACTCAATGAATACTCACTACGTTTCTTAAAATATAAATACTA
ATTTACCTTTTTAAAATCTTTCCAGTAATCGAAGTATCGAGTGGCGAATA
TGGATCTCACGTAGACAAAATGGTATCAGCGGTGGAAAACGGGAAGAATC
AGCGATGGAGGACGTATGGCATTGAGGAGAATCCATCAGGGGAACAATTT
GAGGAGATGGAGATAGAACAGCTGAACGCCGGCGGTGTTGAGAAGCATAA
TTACAAGCACGGATGTTCAGCTTGCCAGCAATTCATTGTTTTATTGAAAA
GAATGTTGTTACAGACTGTTAGGAATAAGGTAATAACATTTTCTTTTCTT
ATTTGAGGTCTAAGCCGGTAAACGAGCAAACGGATCACCTGACAGTTAGC
AATCGCAGCCGCCTATGGACAGTGGACACCCGAAACATCAGTGGCGTTAC
AACGTTATAAGCGCATTGCCTGCATTTGGGGGTAGGAATTTAAGGGTTGT
TGGGGAATAGGGGTTTGGGAACACTTACAGAATGAAACACAATGCAGGTG
TTGTTTCACGTCGGTTTTCTCTTTAGCCGTGGTATCAATCCGGTGGAGCC
AGCCCATTCGTGCCGAAGAATGGCTCTCCCACACTTAAATTATCTTTTAT
TAATCGTAAATTGACCAACCCCACCTGGTCTTTCGTCGGGTGTCTCGACT
AAGGTGAATGTCCACGACGCGTCATTTGTCAAATGCATGCAACAACGTTA
AAATACAGACTCATCGTCTTTTGAATTTTGGTACATTGAACGCTGCATCT
TAAATTTACTTTCAAATTAATCTGAGTATTTCTTTCTTCCAGAGTTACCT
ATGGCTGCGCGTCGGCTTACATTTGTTCATAGGAGTCATTGTGGCCAGTC
TATTCAACAAGATGGGCTATGACGCTTCGAAGACTATCTTCAACTTTGGT
TTCTGCTACGCCTGTACTATTGCCATGCTTTACATTCCCATGATGCCCGT
TTTACTTGCCTGTGAGTATCTAACTGTCTTTTTAAGCAACTTCAAATAA
back to top

Coding sequence (CDS) from alignment at scaffold_15277:164..5962+

>GSSPFG00018312001-RA ID=GSSPFG00018312001-RA|Name=GSSPFG00018312001-RA|organism=Spodoptera frugiperda corn|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_15277:164..5962+ (Spodoptera frugiperda corn)
TCAAAGATAATTCTGCGCAGCATCAACGGTGACTTTCGATCGGGGCAGCT
GACTGCAATCTTGGGTCCGTCAGGCGCTGGCAAAAGTACATTACTGAACA
TACTAGCTGGATATAGGGTAGCAGGAGCGTCAGGAACAATCTTCACCAAT
GGCGAGCCCCGAGACTTGCATCAGTTCAGGAAACTGTCCCGGTACATCAT
GCAGGAGGACTTGCTGCAGCCGTACATCACCGTACAGGAGGCCATGATGA
TAGCTGCCGACCTGAAGCTGGGCAACGGGATCACTAAGGAGAAGAAGCTG
GTTATTGCCGAAGAAATTATTCAGTTATTAAGGCTACAGAAAGCGAGGAA
TACGGCGACGGAGAGGCTATCAGGGGGCGAGAGGAAACGAATATCAATAG
CTTTAGAACTACTCAACAACCCACCGGTTATATTCTTGGATGAACCTACT
ACAGGTTTAGATGACGTAGCCTCTTCAACATGTGTGTCACTCCTCAAACG
GGTGGCTCGAGGAGGGAGGACGGTGGTCTGCTCCCTCCACACTCCCTCAG
CTCGTTTATTCGCCGAGTTTGACCATGTATACGTGGTGGCAGGTGGCCGC
TGTGCCTACCAGGGAACTGCTCCAGGGGTCGTGCCCTTCCTCAAGGAGCT
GCAGCTGCCTTGTCCTAAGACTTATAATCCTGCTGATTTTATAATCGAAG
TATCGAGTGGCGAATATGGATCTCACGTAGACAAAATGGTATCAGCGGTG
GAAAACGGGAAGAATCAGCGATGGAGGACGTATGGCATTGAGGAGAATCC
ATCAGGGGAACAATTTGAGGAGATGGAGATAGAACAGCTGAACGCCGGCG
GTGTTGAGAAGCATAATTACAAGCACGGATGTTCAGCTTGCCAGCAATTC
ATTGTTTTATTGAAAAGAATGTTGTTACAGACTGTTAGGAATAAGAGTTA
CCTATGGCTGCGCGTCGGCTTACATTTGTTCATAGGAGTCATTGTGGCCA
GTCTATTCAACAAGATGGGCTATGACGCTTCGAAGACTATCTTCAACTTT
GGTTTCTGCTACGCCTGTACTATTGCCATGCTTTACATTCCCATGATGCC
CGTTTTACTTGCCTGTGAGTATCTAACTGTCTTTTTAAGCAACTTCAAAT
AA
back to top
Synonyms
The feature 'GSSPFG00018312001-RA' has the following synonyms
Synonym
GSSPFG00018312001-PA
GSSPFP00018312001
GSSPFT00018312001
GSSPFG00018312001