SFRICE020481-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE020481-RA
Unique NameSFRICE020481-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_010137contigSFRU_RICE_010137:433..4071 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE020481
eAED0.15
QI0|0|0|1|1|1|7|0|464
AED0.15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE020481SFRICE020481Spodoptera frugiperda ricegeneSFRU_RICE_010137 433..4071 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE020481-RA-exonSFRICE020481-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_010137 433..682 +
SFRICE020481-RA-exonSFRICE020481-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_010137 806..1001 +
SFRICE020481-RA-exonSFRICE020481-RA-exon-3Spodoptera frugiperda riceexonSFRU_RICE_010137 1460..1622 +
SFRICE020481-RA-exonSFRICE020481-RA-exon-4Spodoptera frugiperda riceexonSFRU_RICE_010137 1895..2089 +
SFRICE020481-RA-exonSFRICE020481-RA-exon-5Spodoptera frugiperda riceexonSFRU_RICE_010137 2543..2752 +
SFRICE020481-RA-exonSFRICE020481-RA-exon-6Spodoptera frugiperda riceexonSFRU_RICE_010137 3211..3357 +
SFRICE020481-RA-exonSFRICE020481-RA-exon-7Spodoptera frugiperda riceexonSFRU_RICE_010137 3838..4071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE020481-RA-CDSSFRICE020481-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_010137 433..682 +
SFRICE020481-RA-CDSSFRICE020481-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_010137 806..1001 +
SFRICE020481-RA-CDSSFRICE020481-RA-CDS-3Spodoptera frugiperda riceCDSSFRU_RICE_010137 1460..1622 +
SFRICE020481-RA-CDSSFRICE020481-RA-CDS-4Spodoptera frugiperda riceCDSSFRU_RICE_010137 1895..2089 +
SFRICE020481-RA-CDSSFRICE020481-RA-CDS-5Spodoptera frugiperda riceCDSSFRU_RICE_010137 2543..2752 +
SFRICE020481-RA-CDSSFRICE020481-RA-CDS-6Spodoptera frugiperda riceCDSSFRU_RICE_010137 3211..3357 +
SFRICE020481-RA-CDSSFRICE020481-RA-CDS-7Spodoptera frugiperda riceCDSSFRU_RICE_010137 3838..4071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE020481-RASFRICE020481-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_010137 433..4071 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE020481-RA ID=SFRICE020481-RA|Name=SFRICE020481-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1395bp|location=Sequence derived from alignment at SFRU_RICE_010137:433..4071+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
GCGACAGGCACACGTATAGGTGCTTTAATGCAGGCCACAGCCACGATAGT
GATTGGCATCATGCTGTCGATGTACTTCACGTGGAAGATGACACTGGTCT
CCCTGATCTCGGTGCCGGCGGTCATCGGTAGCGTGGTAATGGAAGGCAGA
GTGCTATCTGTCGGCCTACAACTGGTTCGCGAAGCTTCCTACAGAGCAAC
CACAATTGCTACTGAAGCCATTACCAATATCAAGACCGTCGCCGCTTTCT
GTGGTGAAGAGGCTGTGATAAAGCGCTACCACGATGCGTTTGTGGGCGGT
CGAGCGATGGCACGCAAGAGTCTGCGCTGGCGCGGGACTGTGTTCTCGTT
CGGGCAGACTGCACCCGTCGCGGGGTATGCCCTGTCTCTATGGTACGGTG
GTGTACTCGTCGCCGAAGGAGAGATACACTACAAGACCGTTATTAAGGTA
TCTGAAGCTCTGATCTTCGGCGCTTGGATGATGGGCCAGGCGTTAGCGTT
CGCGCCCAACTTCGGCGCGGCGGTGAGTGCCGCTGGCCGTGTTATGACGC
TGCTCGCTCGGAAACCACGAGTGTGTGACACGGTTTCACCTAGTGTGCCA
GTGGATTACGTGGCCCAGGGTAAAATTGAGTACAAAAACGTAAAGTTCCG
ATACCCAACGCGACGCGAAGTAGAAGTGCTACGTGGACTATCAGTACTTA
TCCCGTTCGGCAAACGAGTGGCTTTCGTGGGACCTAGCGGCTGCGGGAAG
TCCACTCTCATCCAACTTATACAGCGACTTTATGACCCTGAAGAAGGCAA
TGTGTATATGGATGATTACAATGTAGTATCGGATATGCGTCTGCAAACAT
TACGTGCGAACCTTGGCATCGTATCTCAAGAACCGGTGCTTTTCGATAGA
ACGATCGCAGAGAATATTGCTTATGGAGACAACAGGCGCAATGTCACCAT
TGAAGAAATCGTCTCCGCGGCCAAACAGGCCAACGTTCACACCTTTATAT
CCGCATTGCCTAACGCATACAATACACGCATCGGCGCCCGCGCATCCCAG
CTGTCCGGAGGTCAGAAACAGCGAATCGCAATAGCGCGGGCACTCGTGCG
CAATCCACGCGTGCTACTGTTGGACGAGGCAACGTCAGCTCTAGATACAC
ACAGCGAAAAGGTAGTACAAGAAGCTCTGGACAGAGCCAGCGAAGGCCGT
ACGAGTCTCATCATAGCCCATCGTCTATCCACAATACAAACAGCAGACAT
GATCGTGGTTATAGCTAAAGGAGTGGTCGCCGAAACCGGTACGCACAGAG
AACTTCTAGAAAAGAACGGCATATACGCAAGACTTTATGAACTGCAATGC
GGCATACCGGAAGAAATTGAAGAAACGGCAGATGGCGACGTGTAG
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protein sequence of SFRICE020481-RA

>SFRICE020481-PA ID=SFRICE020481-PA|Name=SFRICE020481-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=465bp
ATGTRIGALMQATATIVIGIMLSMYFTWKMTLVSLISVPAVIGSVVMEGR
VLSVGLQLVREASYRATTIATEAITNIKTVAAFCGEEAVIKRYHDAFVGG
RAMARKSLRWRGTVFSFGQTAPVAGYALSLWYGGVLVAEGEIHYKTVIKV
SEALIFGAWMMGQALAFAPNFGAAVSAAGRVMTLLARKPRVCDTVSPSVP
VDYVAQGKIEYKNVKFRYPTRREVEVLRGLSVLIPFGKRVAFVGPSGCGK
STLIQLIQRLYDPEEGNVYMDDYNVVSDMRLQTLRANLGIVSQEPVLFDR
TIAENIAYGDNRRNVTIEEIVSAAKQANVHTFISALPNAYNTRIGARASQ
LSGGQKQRIAIARALVRNPRVLLLDEATSALDTHSEKVVQEALDRASEGR
TSLIIAHRLSTIQTADMIVVIAKGVVAETGTHRELLEKNGIYARLYELQC
GIPEEIEETADGDV.
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mRNA from alignment at SFRU_RICE_010137:433..4071+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE020481-RA ID=SFRICE020481-RA|Name=SFRICE020481-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=3639bp|location=Sequence derived from alignment at SFRU_RICE_010137:433..4071+ (Spodoptera frugiperda rice)
GCGACAGGCACACGTATAGGTGCTTTAATGCAGGCCACAGCCACGATAGT
GATTGGCATCATGCTGTCGATGTACTTCACGTGGAAGATGACACTGGTCT
CCCTGATCTCGGTGCCGGCGGTCATCGGTAGCGTGGTAATGGAAGGCAGA
GTGCTATCTGTCGGCCTACAACTGGTTCGCGAAGCTTCCTACAGAGCAAC
CACAATTGCTACTGAAGCCATTACCAATATCAAGACCGTCGCCGCTTTCT
GTAAGTGACTACACTCAAAGAAACGTTGATAGAGCCATAAGCTCAATTGT
TTTTAGTGCCATTGTCAACATGAAATTTTCTTGACATGACATTCTTATCT
ATAAAAGGGACTCTTTTGCCAAGGTGGTGAAGAGGCTGTGATAAAGCGCT
ACCACGATGCGTTTGTGGGCGGTCGAGCGATGGCACGCAAGAGTCTGCGC
TGGCGCGGGACTGTGTTCTCGTTCGGGCAGACTGCACCCGTCGCGGGGTA
TGCCCTGTCTCTATGGTACGGTGGTGTACTCGTCGCCGAAGGAGAGATAC
ACTACAAGACCGTTATTAAGTAAGTTTCCCTCAGTATATTAACTTAATAA
GTTCTTCCGTTTGTGTTGCGTCACTCTCTCTGTATNNNNNNNNNNNNNNN
NNNNNNNACAGACAGACTATTATTTATTTCTTTATTTGTTGACGTATCAA
AGTACCTCTTTATGGTTTAATTGAAATAAATAATAAAATATAAATATTAA
ATGTGCCCGGTATATGGCAATAGTCTCACCCCCTATTACGTGGGACTTAT
AGCACATATGGTGAAAACTGGGTGTACATTGTATAGTGGCATCACGTGCC
GTAATGTGCACCTCTGCGTACCCCTTCGGGGATGAGTGACGTTGCGTTGC
ATTGAAATAAATAATTTGACTTTGACTTTTCTGGATTCTATTCTGTTTCA
ACGTTTGATAGAAGCCGGATCATTTATGCCAAAGCCGAAGCGTGGCGTAC
ATGTTTTAAAGGAGAAATGGGTTTCAGGGTATCTGAAGCTCTGATCTTCG
GCGCTTGGATGATGGGCCAGGCGTTAGCGTTCGCGCCCAACTTCGGCGCG
GCGGTGAGTGCCGCTGGCCGTGTTATGACGCTGCTCGCTCGGAAACCACG
AGTGTGTGACACGGTTTCACCTAGTGTGCCAGTGGATTACGTAAGTGCTA
AATTACATTCTTATCAATATTATATTCTAATAGCTCTCATATTTCCTTAC
TTGATGTTTTTGGTACTTTGTGTAATGTTCAAAAAAATAAGATTGATAAT
ATAAAATAGAATTTATGTATGACTTACTTAATATCTGAAGGAAAATGAGG
CGTTGTGCAACTACTATCAGTTGCACAACGCATCATTTTACCATTCCCTC
GCGAAGATAGATCTCTAAGCATTTTATCAACAACCTTTTATATCGTTAAT
TCTTATTTTTAGGTGGCCCAGGGTAAAATTGAGTACAAAAACGTAAAGTT
CCGATACCCAACGCGACGCGAAGTAGAAGTGCTACGTGGACTATCAGTAC
TTATCCCGTTCGGCAAACGAGTGGCTTTCGTGGGACCTAGCGGCTGCGGG
AAGTCCACTCTCATCCAACTTATACAGCGACTTTATGACCCTGAAGAAGG
CAATGTGGTAAGTCCTAACACCAGCACTTTTTTTATTTATATTACTTTTT
GCAACTTTATCTTACAAGGGTCGGCTCAATGCAATGGATTTTCTTGCTAA
CCAACCTTTAGGTGATGCGGTGAGAATGTGGTCTGTACAATAACGTCTGA
TATTCCCCAAAAGCAAGTGTCTGTTATGTTTCGAGGTCATTGGTGGAGCT
TACTATGATGGTGATGATGTTTTTTTCAAAAGGTGAATGACCACGACTAT
TTTGTTAAGAATGAATTGAACATCCCAGTCCCATGTTGGGTGCCAATGAC
AATAAAATATGATTACCAATTTACCACGTTTTAACTAAAATATGTTTTAT
TGTTCTTATCATACTTCTGGACTTACTTCATCTCGTATGTAACCGTAGAG
GTATCAGATTAGGTACCTATATAAGTACATTTTCAATCAGTCAATTTCTA
TTTATTGCAGTATATGGATGATTACAATGTAGTATCGGATATGCGTCTGC
AAACATTACGTGCGAACCTTGGCATCGTATCTCAAGAACCGGTGCTTTTC
GATAGAACGATCGCAGAGAATATTGCTTATGGAGACAACAGGCGCAATGT
CACCATTGAAGAAATCGTCTCCGCGGCCAAACAGGCCAACGTTCACACCT
TTATATCCGCATTGCCTAACGTAAGTACCTAGTTTACCAAATATTCTTTT
TTTTCAGTGTTCAGCGTCGTAAGATTTGCCATGTGGTGTCAGCAGAGTAG
AATGTATGTAATCCCAGCGCCGGATGAAGCCGACGCGGAGTCCATAGCTG
ATGTGCACAGGCGCGGGGCATTTTCTGCCTCCTGCTCCATGGCTAATCCG
GCACTGTGTAACTCCCACTCCTGCTTATCCAGCGGGTGTCGAAATAAAAG
CCGATTAAAGTACTAAGATTACATTTTGACAGACCGTTTTATTTCAGTAA
AAATCCAAATAAGTTCTATTTTCAATCTGGGGATAGAAACCGATACCATT
ATATCTAGACCAGTTGATTGAAGCTTCCATGCTCAATCGAATCGTTTAAA
AGATATTACTATTGTTTTTTTTTAAGTTAGTTACATACTTTGTACCTACA
TAGTAATTCACCGTCTACTGTTATAAAGGCATACAATACACGCATCGGCG
CCCGCGCATCCCAGCTGTCCGGAGGTCAGAAACAGCGAATCGCAATAGCG
CGGGCACTCGTGCGCAATCCACGCGTGCTACTGTTGGACGAGGCAACGTC
AGCTCTAGATACACACAGCGAAAAGGTAAGTTAAAGTATCGAGAATAAAT
TCCAATATGAAGTCAATAATTATTATGATACATACGGACTGACAGCAAGC
AGACGCTCTCACATTTGATACGATACGAATACGCTTCGGCACGAAAGGGT
CGGTTCGATCAGAGTTATACCACGGACTCACAGAAAACCAGCAGGAAACA
ATGTTCGTGTTATGTTTTGCCATGTAAGTGTGAGGCATGTAAGTTATCAG
AGGCCTAATTCCTCTTAAAAGTCCGGCCACGCATTTGTAACTATTCTGCT
GTTAGATATGGGTTACCATTGGCAGCGCCGATTGCTTACTATCAGGTGAT
CCCATAAAAAATACCACTAAGCAGTCAAATAAAGTCAGGGTTAATGTTTA
CAAACAGAGCGATTAGGTACCTGACTAGCTGTATAGATAATACAAGTCTG
TATACATAGGTCATTTAGTTACATTTTTATTACTAAGTGCGCCTCCTTTT
TACAGGTAGTACAAGAAGCTCTGGACAGAGCCAGCGAAGGCCGTACGAGT
CTCATCATAGCCCATCGTCTATCCACAATACAAACAGCAGACATGATCGT
GGTTATAGCTAAAGGAGTGGTCGCCGAAACCGGTACGCACAGAGAACTTC
TAGAAAAGAACGGCATATACGCAAGACTTTATGAACTGCAATGCGGCATA
CCGGAAGAAATTGAAGAAACGGCAGATGGCGACGTGTAG
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Coding sequence (CDS) from alignment at SFRU_RICE_010137:433..4071+

>SFRICE020481-RA ID=SFRICE020481-RA|Name=SFRICE020481-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1395bp|location=Sequence derived from alignment at SFRU_RICE_010137:433..4071+ (Spodoptera frugiperda rice)
GCGACAGGCACACGTATAGGTGCTTTAATGCAGGCCACAGCCACGATAGT
GATTGGCATCATGCTGTCGATGTACTTCACGTGGAAGATGACACTGGTCT
CCCTGATCTCGGTGCCGGCGGTCATCGGTAGCGTGGTAATGGAAGGCAGA
GTGCTATCTGTCGGCCTACAACTGGTTCGCGAAGCTTCCTACAGAGCAAC
CACAATTGCTACTGAAGCCATTACCAATATCAAGACCGTCGCCGCTTTCT
GTGGTGAAGAGGCTGTGATAAAGCGCTACCACGATGCGTTTGTGGGCGGT
CGAGCGATGGCACGCAAGAGTCTGCGCTGGCGCGGGACTGTGTTCTCGTT
CGGGCAGACTGCACCCGTCGCGGGGTATGCCCTGTCTCTATGGTACGGTG
GTGTACTCGTCGCCGAAGGAGAGATACACTACAAGACCGTTATTAAGGTA
TCTGAAGCTCTGATCTTCGGCGCTTGGATGATGGGCCAGGCGTTAGCGTT
CGCGCCCAACTTCGGCGCGGCGGTGAGTGCCGCTGGCCGTGTTATGACGC
TGCTCGCTCGGAAACCACGAGTGTGTGACACGGTTTCACCTAGTGTGCCA
GTGGATTACGTGGCCCAGGGTAAAATTGAGTACAAAAACGTAAAGTTCCG
ATACCCAACGCGACGCGAAGTAGAAGTGCTACGTGGACTATCAGTACTTA
TCCCGTTCGGCAAACGAGTGGCTTTCGTGGGACCTAGCGGCTGCGGGAAG
TCCACTCTCATCCAACTTATACAGCGACTTTATGACCCTGAAGAAGGCAA
TGTGTATATGGATGATTACAATGTAGTATCGGATATGCGTCTGCAAACAT
TACGTGCGAACCTTGGCATCGTATCTCAAGAACCGGTGCTTTTCGATAGA
ACGATCGCAGAGAATATTGCTTATGGAGACAACAGGCGCAATGTCACCAT
TGAAGAAATCGTCTCCGCGGCCAAACAGGCCAACGTTCACACCTTTATAT
CCGCATTGCCTAACGCATACAATACACGCATCGGCGCCCGCGCATCCCAG
CTGTCCGGAGGTCAGAAACAGCGAATCGCAATAGCGCGGGCACTCGTGCG
CAATCCACGCGTGCTACTGTTGGACGAGGCAACGTCAGCTCTAGATACAC
ACAGCGAAAAGGTAGTACAAGAAGCTCTGGACAGAGCCAGCGAAGGCCGT
ACGAGTCTCATCATAGCCCATCGTCTATCCACAATACAAACAGCAGACAT
GATCGTGGTTATAGCTAAAGGAGTGGTCGCCGAAACCGGTACGCACAGAG
AACTTCTAGAAAAGAACGGCATATACGCAAGACTTTATGAACTGCAATGC
GGCATACCGGAAGAAATTGAAGAAACGGCAGATGGCGACGTGTAG
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Synonyms
The feature 'SFRICE020481-RA' has the following synonyms
Synonym
SFRICE020481-PA
SFRICE020481
maker-SFRU_RICE_010137-augustus-gene-0.8-mRNA-1