SFRICE022150-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE022150-RA
Unique NameSFRICE022150-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_012849contigSFRU_RICE_012849:6888..8620 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE022150
eAED0.05
QI0|1|0.5|1|1|1|2|44|508
AED0.05
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE022150SFRICE022150Spodoptera frugiperda ricegeneSFRU_RICE_012849 6888..8620 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE022150-RA-exonSFRICE022150-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_012849 6888..7100 -
SFRICE022150-RA-exonSFRICE022150-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_012849 7263..8620 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE022150-RA-three_prime_UTRSFRICE022150-RA-three_prime_UTR-5Spodoptera frugiperda ricethree_prime_UTRSFRU_RICE_012849 6888..6931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE022150-RA-CDSSFRICE022150-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_012849 6932..7100 -
SFRICE022150-RA-CDSSFRICE022150-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_012849 7263..8620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE022150-RASFRICE022150-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_012849 6932..8620 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE022150-RA ID=SFRICE022150-RA|Name=SFRICE022150-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1571bp|location=Sequence derived from alignment at SFRU_RICE_012849:6888..8620- (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTTATTGTCATTATCTCGATTGTTGCAGGCTCCCCAACCACCGGA
GCCATGGGATGGGGTCCGCAGCGCCAAAGAATTCGGACCGGGCTGCTTTC
AGTACGATTTGTTCGTGGACAAAGGACATGTATCAGGAAGTGAAGATTGC
TTGTATTTAAATGTGTACAGACCTAATGTTACACATGAAAATCCTCTTCC
AGTAATGGTGTGGATCCATGGAGGAGGTCTAGTGTCTGGTGCCGGCGACG
ACTACGAATACGGTCCCAAGTTCTTAGTAAGACAAGATGTAATCCTTGTT
ACTCTCAATTACCGACTTGAAGTACTCGGTTTCCTCTGTTTAGACACTGA
AGATGTGCCTGGAAATGCTGGCATGAAGGATCAGGTAGCAGCCCTCAGGT
GGGTGAAGAAAAATATCGCCAGCTTCGGTGGTGACCCAGACAACATAACT
ATATTCGGTGAAAGTGCTGGTGGTGTCAGCGTCACATACCACTTGATGTC
ACCAATGTCCAAGGGCCTATTCCGGAGGGCAATAGCTCAGAGTGGTGTCA
GTGTCTCGTACTGGGCTCAATCATACAAACCTCGTGAAAGAGGCTTTGCG
TTAGCAAGGAAATTAGGATTCTATTCTGATGATGTTAAAGAAGTTTACGA
ATTTCTAAAACAACAACCTTTGGAGAATTTAATAAAAGTCAAAGTTCCAA
TAACTTATTCCGAAAAAGTACGAACAAATAATGAGGTATTCTTTAGTGTG
GTTGAGGAAAAACAGTTTGGGAACAACGAGCGATTCTTCTACGGAGACAT
GATCGATGCAGTGTCGAACGGTATTCACGAAGGAGTTGACATTATGACAG
GATACACAGCGGATGAAGGGATAATGAGCGTAGCTGTCTTTGGTGACTAC
AAAGAAAGTTTAGAACAAGCCAAACACTTCCCGCAATTTTTCGTCTCATA
TCCAATGTCACTCACATTGTCCACTAATGACCAATTGGAGCTTGGCAACA
GATTAAAGGAGTATTATTTCAAAGAACAAATTCAGATACCAGACCACTGG
GAGAATTTAAAAGACTTTTATTCAATGGATGTATTCGTATTTCCTACCAT
GAGGTGGATTAAGCTGAGCGCCCGTTCCAAGAAGAACAAGATATATTTGT
ACAAGTTCACTTGTCACACAGAACTAAATAGGGCTTCTGAGCTGATGGGA
GTTGGCCATCTTGTTGGAGATAAACCAATGGTGGCTCATTCCGATGATTT
AACGTATTTGTTTAGTGCCAGAGAACAGCCTATACTGGACATGAATTCTG
AAGAATTCAAACAGGTCGAGGTAGTGACAAAACTTTGGACCAACTTTGCT
AAATATGGCAACCCTACTCCAGATGACTCCTTTGGCGTAGTATGGACCCC
ATACACCTTAGAGAATCAGGATTATTTGGACATCGGCAATGAATTGAAAA
CTGGACAGGCACCTGACGATGAAGAAATCAAATTTTGGGAAAATATTTTA
ACAGAATTTGGACAAGAATTGTATTAAAGATTGATGTTTGAATTGGTAAT
AAATGGTAATAAAGTACTTAA
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protein sequence of SFRICE022150-RA

>SFRICE022150-PA ID=SFRICE022150-PA|Name=SFRICE022150-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=509bp
MVLLSLSRLLQAPQPPEPWDGVRSAKEFGPGCFQYDLFVDKGHVSGSEDC
LYLNVYRPNVTHENPLPVMVWIHGGGLVSGAGDDYEYGPKFLVRQDVILV
TLNYRLEVLGFLCLDTEDVPGNAGMKDQVAALRWVKKNIASFGGDPDNIT
IFGESAGGVSVTYHLMSPMSKGLFRRAIAQSGVSVSYWAQSYKPRERGFA
LARKLGFYSDDVKEVYEFLKQQPLENLIKVKVPITYSEKVRTNNEVFFSV
VEEKQFGNNERFFYGDMIDAVSNGIHEGVDIMTGYTADEGIMSVAVFGDY
KESLEQAKHFPQFFVSYPMSLTLSTNDQLELGNRLKEYYFKEQIQIPDHW
ENLKDFYSMDVFVFPTMRWIKLSARSKKNKIYLYKFTCHTELNRASELMG
VGHLVGDKPMVAHSDDLTYLFSAREQPILDMNSEEFKQVEVVTKLWTNFA
KYGNPTPDDSFGVVWTPYTLENQDYLDIGNELKTGQAPDDEEIKFWENIL
TEFGQELY.
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mRNA from alignment at SFRU_RICE_012849:6888..8620-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE022150-RA ID=SFRICE022150-RA|Name=SFRICE022150-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1733bp|location=Sequence derived from alignment at SFRU_RICE_012849:6888..8620- (Spodoptera frugiperda rice)
ATGGTTTTATTGTCATTATCTCGATTGTTGCAGGCTCCCCAACCACCGGA
GCCATGGGATGGGGTCCGCAGCGCCAAAGAATTCGGACCGGGCTGCTTTC
AGTACGATTTGTTCGTGGACAAAGGACATGTATCAGGAAGTGAAGATTGC
TTGTATTTAAATGTGTACAGACCTAATGTTACACATGAAAATCCTCTTCC
AGTAATGGTGTGGATCCATGGAGGAGGTCTAGTGTCTGGTGCCGGCGACG
ACTACGAATACGGTCCCAAGTTCTTAGTAAGACAAGATGTAATCCTTGTT
ACTCTCAATTACCGACTTGAAGTACTCGGTTTCCTCTGTTTAGACACTGA
AGATGTGCCTGGAAATGCTGGCATGAAGGATCAGGTAGCAGCCCTCAGGT
GGGTGAAGAAAAATATCGCCAGCTTCGGTGGTGACCCAGACAACATAACT
ATATTCGGTGAAAGTGCTGGTGGTGTCAGCGTCACATACCACTTGATGTC
ACCAATGTCCAAGGGCCTATTCCGGAGGGCAATAGCTCAGAGTGGTGTCA
GTGTCTCGTACTGGGCTCAATCATACAAACCTCGTGAAAGAGGCTTTGCG
TTAGCAAGGAAATTAGGATTCTATTCTGATGATGTTAAAGAAGTTTACGA
ATTTCTAAAACAACAACCTTTGGAGAATTTAATAAAAGTCAAAGTTCCAA
TAACTTATTCCGAAAAAGTACGAACAAATAATGAGGTATTCTTTAGTGTG
GTTGAGGAAAAACAGTTTGGGAACAACGAGCGATTCTTCTACGGAGACAT
GATCGATGCAGTGTCGAACGGTATTCACGAAGGAGTTGACATTATGACAG
GATACACAGCGGATGAAGGGATAATGAGCGTAGCTGTCTTTGGTGACTAC
AAAGAAAGTTTAGAACAAGCCAAACACTTCCCGCAATTTTTCGTCTCATA
TCCAATGTCACTCACATTGTCCACTAATGACCAATTGGAGCTTGGCAACA
GATTAAAGGAGTATTATTTCAAAGAACAAATTCAGATACCAGACCACTGG
GAGAATTTAAAAGACTTTTATTCAATGGATGTATTCGTATTTCCTACCAT
GAGGTGGATTAAGCTGAGCGCCCGTTCCAAGAAGAACAAGATATATTTGT
ACAAGTTCACTTGTCACACAGAACTAAATAGGGCTTCTGAGCTGATGGGA
GTTGGCCATCTTGTTGGAGATAAACCAATGGTGGCTCATTCCGATGATTT
AACGTATTTGTTTAGTGCCAGAGAACAGCCTATACTGGACATGAATTCTG
AAGAATTCAAACAGGTCGAGGTAGTGACAAAACTTTGGACCAACTTTGCT
AAATATGGGTGAGTAATATGTTGCTACTGTTATTAAGGTCTCTAGATAAC
GTACATTTTTATCATTACAGCAATGCTTTGCTTTGACAATGATTTCACAC
AAATTATATCACTTGACAGTTACTTTGCCTTTCGTGCCAAATAATAAATA
TTGCTTTACGTTTGTTTTAGCAACCCTACTCCAGATGACTCCTTTGGCGT
AGTATGGACCCCATACACCTTAGAGAATCAGGATTATTTGGACATCGGCA
ATGAATTGAAAACTGGACAGGCACCTGACGATGAAGAAATCAAATTTTGG
GAAAATATTTTAACAGAATTTGGACAAGAATTGTATTAAAGATTGATGTT
TGAATTGGTAATAAATGGTAATAAAGTACTTAA
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Coding sequence (CDS) from alignment at SFRU_RICE_012849:6888..8620-

>SFRICE022150-RA ID=SFRICE022150-RA|Name=SFRICE022150-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1527bp|location=Sequence derived from alignment at SFRU_RICE_012849:6888..8620- (Spodoptera frugiperda rice)
ATGGTTTTATTGTCATTATCTCGATTGTTGCAGGCTCCCCAACCACCGGA
GCCATGGGATGGGGTCCGCAGCGCCAAAGAATTCGGACCGGGCTGCTTTC
AGTACGATTTGTTCGTGGACAAAGGACATGTATCAGGAAGTGAAGATTGC
TTGTATTTAAATGTGTACAGACCTAATGTTACACATGAAAATCCTCTTCC
AGTAATGGTGTGGATCCATGGAGGAGGTCTAGTGTCTGGTGCCGGCGACG
ACTACGAATACGGTCCCAAGTTCTTAGTAAGACAAGATGTAATCCTTGTT
ACTCTCAATTACCGACTTGAAGTACTCGGTTTCCTCTGTTTAGACACTGA
AGATGTGCCTGGAAATGCTGGCATGAAGGATCAGGTAGCAGCCCTCAGGT
GGGTGAAGAAAAATATCGCCAGCTTCGGTGGTGACCCAGACAACATAACT
ATATTCGGTGAAAGTGCTGGTGGTGTCAGCGTCACATACCACTTGATGTC
ACCAATGTCCAAGGGCCTATTCCGGAGGGCAATAGCTCAGAGTGGTGTCA
GTGTCTCGTACTGGGCTCAATCATACAAACCTCGTGAAAGAGGCTTTGCG
TTAGCAAGGAAATTAGGATTCTATTCTGATGATGTTAAAGAAGTTTACGA
ATTTCTAAAACAACAACCTTTGGAGAATTTAATAAAAGTCAAAGTTCCAA
TAACTTATTCCGAAAAAGTACGAACAAATAATGAGGTATTCTTTAGTGTG
GTTGAGGAAAAACAGTTTGGGAACAACGAGCGATTCTTCTACGGAGACAT
GATCGATGCAGTGTCGAACGGTATTCACGAAGGAGTTGACATTATGACAG
GATACACAGCGGATGAAGGGATAATGAGCGTAGCTGTCTTTGGTGACTAC
AAAGAAAGTTTAGAACAAGCCAAACACTTCCCGCAATTTTTCGTCTCATA
TCCAATGTCACTCACATTGTCCACTAATGACCAATTGGAGCTTGGCAACA
GATTAAAGGAGTATTATTTCAAAGAACAAATTCAGATACCAGACCACTGG
GAGAATTTAAAAGACTTTTATTCAATGGATGTATTCGTATTTCCTACCAT
GAGGTGGATTAAGCTGAGCGCCCGTTCCAAGAAGAACAAGATATATTTGT
ACAAGTTCACTTGTCACACAGAACTAAATAGGGCTTCTGAGCTGATGGGA
GTTGGCCATCTTGTTGGAGATAAACCAATGGTGGCTCATTCCGATGATTT
AACGTATTTGTTTAGTGCCAGAGAACAGCCTATACTGGACATGAATTCTG
AAGAATTCAAACAGGTCGAGGTAGTGACAAAACTTTGGACCAACTTTGCT
AAATATGGCAACCCTACTCCAGATGACTCCTTTGGCGTAGTATGGACCCC
ATACACCTTAGAGAATCAGGATTATTTGGACATCGGCAATGAATTGAAAA
CTGGACAGGCACCTGACGATGAAGAAATCAAATTTTGGGAAAATATTTTA
ACAGAATTTGGACAAGAATTGTATTAA
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Synonyms
The feature 'SFRICE022150-RA' has the following synonyms
Synonym
SFRICE022150-PA
SFRICE022150
maker-SFRU_RICE_012849-augustus-gene-0.9-mRNA-1