SFRICE023343-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE023343-RA
Unique NameSFRICE023343-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_016335contigSFRU_RICE_016335:3..3097 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE023343
eAED0.18
QI0|1|0.9|1|1|1|10|121|503
AED0.18
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE023343SFRICE023343Spodoptera frugiperda ricegeneSFRU_RICE_016335 3..3097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE023343-RASFRICE023343-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_016335 3..2976 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE023343-RA-exonSFRICE023343-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_016335 3..53 +
SFRICE023343-RA-exonSFRICE023343-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_016335 243..382 +
SFRICE023343-RA-exonSFRICE023343-RA-exon-3Spodoptera frugiperda riceexonSFRU_RICE_016335 636..778 +
SFRICE023343-RA-exonSFRICE023343-RA-exon-4Spodoptera frugiperda riceexonSFRU_RICE_016335 866..1051 +
SFRICE023343-RA-exonSFRICE023343-RA-exon-5Spodoptera frugiperda riceexonSFRU_RICE_016335 1164..1357 +
SFRICE023343-RA-exonSFRICE023343-RA-exon-6Spodoptera frugiperda riceexonSFRU_RICE_016335 1440..1611 +
SFRICE023343-RA-exonSFRICE023343-RA-exon-7Spodoptera frugiperda riceexonSFRU_RICE_016335 1717..1933 +
SFRICE023343-RA-exonSFRICE023343-RA-exon-8Spodoptera frugiperda riceexonSFRU_RICE_016335 2048..2154 +
SFRICE023343-RA-exonSFRICE023343-RA-exon-9Spodoptera frugiperda riceexonSFRU_RICE_016335 2302..2434 +
SFRICE023343-RA-exonSFRICE023343-RA-exon-10Spodoptera frugiperda riceexonSFRU_RICE_016335 2808..3097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE023343-RA-CDSSFRICE023343-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_016335 3..53 +
SFRICE023343-RA-CDSSFRICE023343-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_016335 243..382 +
SFRICE023343-RA-CDSSFRICE023343-RA-CDS-3Spodoptera frugiperda riceCDSSFRU_RICE_016335 636..778 +
SFRICE023343-RA-CDSSFRICE023343-RA-CDS-4Spodoptera frugiperda riceCDSSFRU_RICE_016335 866..1051 +
SFRICE023343-RA-CDSSFRICE023343-RA-CDS-5Spodoptera frugiperda riceCDSSFRU_RICE_016335 1164..1357 +
SFRICE023343-RA-CDSSFRICE023343-RA-CDS-6Spodoptera frugiperda riceCDSSFRU_RICE_016335 1440..1611 +
SFRICE023343-RA-CDSSFRICE023343-RA-CDS-7Spodoptera frugiperda riceCDSSFRU_RICE_016335 1717..1933 +
SFRICE023343-RA-CDSSFRICE023343-RA-CDS-8Spodoptera frugiperda riceCDSSFRU_RICE_016335 2048..2154 +
SFRICE023343-RA-CDSSFRICE023343-RA-CDS-9Spodoptera frugiperda riceCDSSFRU_RICE_016335 2302..2434 +
SFRICE023343-RA-CDSSFRICE023343-RA-CDS-10Spodoptera frugiperda riceCDSSFRU_RICE_016335 2808..2976 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE023343-RA-three_prime_UTRSFRICE023343-RA-three_prime_UTR-21Spodoptera frugiperda ricethree_prime_UTRSFRU_RICE_016335 2977..3097 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE023343-RA ID=SFRICE023343-RA|Name=SFRICE023343-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1633bp|location=Sequence derived from alignment at SFRU_RICE_016335:3..3097+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
TACCGCGGGATACGGTACGCGGACCCACCCGTCGGGGCACTGCGGTTCCA
GCCGCCGAAGTTGAAGCTGCAGTACGAAGGCGTAGTGGACGCGAGCGAGG
AGGGCCCCGCCTGCCCTCTGCCGGCCCCTCCCACCTACTACGTGGACGAG
GACTGCCTCACTGTCAACGTCTACACGCCGACACACAACAGCACCAAAAA
GCTCCCCGTGATCTTCTTCATCCACCCCGGCGGGTTCTACGCGATGACAG
GCCGCAGCGACCTGGCCGGCCCCCACTACCTGCTGGACAGAGACGTAGTT
CTCGTCACCATCAACTACAGACTTGGATCCTTAGGCTTCATGAGTACGGG
CGATGCACTCGCCCCCGGTAACAACGGCATGAAGGACCAGGTGGCCGCCC
TCAAGTGGGTGCAGAGGAACATCGCGGCGTTCGGCGGCGACCCGAACCTC
GTCACGATCACAGGCTGCAGCGCCGGCTCTATCAACGTCATCCTGCATAT
GATCTCGCCCATGGCCAAAGGTCTCTTCCACCGCGGCATAGCAATGAGCG
CGTCTCCTGTAGGCAAAGGAGTGGAAGCTATAACTCATCAGCGCCACCTC
GCAGTACGCCAGGCACAGATCCTCAACTGCCCGACTGACAACTCGTCCGC
CATCGTCGACTGTCTTATGACCAAGCCTTGGAGGGAGCTCGGAGACTCAC
TGCCTAAATTCTGGGAGTTTGGTGAAGGTGACCCAGTGGGTCTTTGGGGG
CCGGTGGTAGAGCCAGATTTCGGGCAGGAGCGGTACCTGCCTATCAATCC
ATTAGATGCCATTAAAGAAGGCAAAATGCACACCGTGCCACTCATCGTGA
GTCAGACTACTGACGAATTTTTCTGGAAGGCATTCCCGGTCTTACAAAAC
GAAACGCTTCTGAAGGCAATGAATGAGGAGTGGGACAGAGTCGCCCCCAT
CTCGTTCATGCTACCGATGGAGAACCGTGCCGCGGCGGTAAAGAAACTTA
GAGAGGTGTACCTCAAGGGGAACAAGTTGGCCAATGATAAACCAAGTGAG
AAAGCACTCGGACAACTTTATGGAGACTCCGTTATTGGGTTTGGAGTACA
CAGGCTGGCCAACCTAATGTGTCGTCACTCCAAGCATCCAGTGTGGTACT
CGGAATTCGCGTACATTGGGAACAACTCCCATTATGAGGACTCTCACGGA
AAACCGCAAGGTGCGGCCCACCACGACGACCTGCTGTACCTGTTCACGCT
GAGCTACCGGTTCCCCGTCATCTCGCCGGACAGCCAGCACTCGCACGTCG
TCGACGAGATGACGGCGCTCTGGTACAACTTCGCCAGATATGGAGACCCG
AACCCGCGCGGCGACACGCCGGAGCTGGGCAGGCTGCGCTGGCCCGCCAT
GACAGCGGCGGACAGGAGGTACCTGCACCGCGGGCCGCAGCTCCAGGTGC
GGCAGAACTTGTTCGAGGAGCGGTTCAAGGTGTGGGACGACTTGTACCCC
ATACAGTACTGAGGACTGTAGCTGAACTAGCTGAGACTAGCGTGTTTTTA
CACAGAATATAAAAATGTTAATAAACTAATTCAGAATGTTATAATTTTAT
ATTGTAAAGTTTTGTACCCGATTTTAAATAAAT
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protein sequence of SFRICE023343-RA

>SFRICE023343-PA ID=SFRICE023343-PA|Name=SFRICE023343-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=504bp
YRGIRYADPPVGALRFQPPKLKLQYEGVVDASEEGPACPLPAPPTYYVDE
DCLTVNVYTPTHNSTKKLPVIFFIHPGGFYAMTGRSDLAGPHYLLDRDVV
LVTINYRLGSLGFMSTGDALAPGNNGMKDQVAALKWVQRNIAAFGGDPNL
VTITGCSAGSINVILHMISPMAKGLFHRGIAMSASPVGKGVEAITHQRHL
AVRQAQILNCPTDNSSAIVDCLMTKPWRELGDSLPKFWEFGEGDPVGLWG
PVVEPDFGQERYLPINPLDAIKEGKMHTVPLIVSQTTDEFFWKAFPVLQN
ETLLKAMNEEWDRVAPISFMLPMENRAAAVKKLREVYLKGNKLANDKPSE
KALGQLYGDSVIGFGVHRLANLMCRHSKHPVWYSEFAYIGNNSHYEDSHG
KPQGAAHHDDLLYLFTLSYRFPVISPDSQHSHVVDEMTALWYNFARYGDP
NPRGDTPELGRLRWPAMTAADRRYLHRGPQLQVRQNLFEERFKVWDDLYP
IQY.
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mRNA from alignment at SFRU_RICE_016335:3..3097+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE023343-RA ID=SFRICE023343-RA|Name=SFRICE023343-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=3095bp|location=Sequence derived from alignment at SFRU_RICE_016335:3..3097+ (Spodoptera frugiperda rice)
TACCGCGGGATACGGTACGCGGACCCACCCGTCGGGGCACTGCGGTTCCA
GGTAACATCCACATATACATAGCGTGCAATCTAGTCCATGACAAAAAACA
TCATCACAAATCTACAACCCATAAATGTCCACTACTGGACTATAGGCCCC
TCTACCGGTCTCTAGAGTTTAATATTCCTTTTGCCTCTCTCTTCTACATG
CAACCATGCAGTTTAAGTAATTCGTTCCTTGTGTCTGCAGCCGCCGAAGT
TGAAGCTGCAGTACGAAGGCGTAGTGGACGCGAGCGAGGAGGGCCCCGCC
TGCCCTCTGCCGGCCCCTCCCACCTACTACGTGGACGAGGACTGCCTCAC
TGTCAACGTCTACACGCCGACACACAACAGGTTCGTTACCATTTCTTTCA
GCTGATCTTAACATATACACAATATAGGACACTGAGCTCAATCTTGACTA
TTTGCATTCAACTACTGCAAGTCACTTTTAGATCGTAACTACACCTGGCA
GTCTACGCCTACAGGGACGTGCGCTTTATTCCAGTCGATACCGTTATCGA
TTCTACAGCAAGTGACCGACTTACTACTTCAACATATCTATTTACTGCTA
TTATTTGTATAATAACTTTCTATTTTGTCGCAGCACCAAAAAGCTCCCCG
TGATCTTCTTCATCCACCCCGGCGGGTTCTACGCGATGACAGGCCGCAGC
GACCTGGCCGGCCCCCACTACCTGCTGGACAGAGACGTAGTTCTCGTCAC
CATCAACTACAGACTTGGATCCTTAGGTAGTCACCGAACTCCTGAATACT
CCTAAATAAATTGACTTTGTTTTGTCCCTCCTTAGTTGATTTTACTAAGC
TTACTTTATCTAGGCTTCATGAGTACGGGCGATGCACTCGCCCCCGGTAA
CAACGGCATGAAGGACCAGGTGGCCGCCCTCAAGTGGGTGCAGAGGAACA
TCGCGGCGTTCGGCGGCGACCCGAACCTCGTCACGATCACAGGCTGCAGC
GCCGGCTCTATCAACGTCATCCTGCATATGATCTCGCCCATGGCCAAAGG
TAATCAGTACTGTCTTGCGATGACAGTACTTGAAGACATCTGGCACCAGA
ACTAAATGTAGAGTGAATTATCCAGGTAGTGGTCCTTTGTACATTAAAAC
AATGCTTCTAGGTCTCTTCCACCGCGGCATAGCAATGAGCGCGTCTCCTG
TAGGCAAAGGAGTGGAAGCTATAACTCATCAGCGCCACCTCGCAGTACGC
CAGGCACAGATCCTCAACTGCCCGACTGACAACTCGTCCGCCATCGTCGA
CTGTCTTATGACCAAGCCTTGGAGGGAGCTCGGAGACTCACTGCCTAAAT
TCTGGGTACGTTTGATATTAAAAGAACTTTTGAAAAATGTGACAAAATAT
TGAAAATGCCCAGAAATAAAGTATTGCGTTGTTGCAGGAGTTTGGTGAAG
GTGACCCAGTGGGTCTTTGGGGGCCGGTGGTAGAGCCAGATTTCGGGCAG
GAGCGGTACCTGCCTATCAATCCATTAGATGCCATTAAAGAAGGCAAAAT
GCACACCGTGCCACTCATCGTGAGTCAGACTACTGACGAATTTTTCTGGA
AGGCATTCCGTAAGTTACCATTGTTTTAGCAAATATTTATTATTATGAAC
ACAAGAACTTTATATTAGTAGATTGAAATAATTTATACGATTGCCCTAAC
TTGCTTGCTTCTAGCGGTCTTACAAAACGAAACGCTTCTGAAGGCAATGA
ATGAGGAGTGGGACAGAGTCGCCCCCATCTCGTTCATGCTACCGATGGAG
AACCGTGCCGCGGCGGTAAAGAAACTTAGAGAGGTGTACCTCAAGGGGAA
CAAGTTGGCCAATGATAAACCAAGTGAGAAAGCACTCGGACAACTTTATG
GAGACTCCGTTATTGGGTTTGGAGTACACAGGTAAGGCGATTATTTACCT
TTTGGTACTACTTGAATTTTTACATGGGAAATCCACTTGATCATAATAGA
CTTTATCATTATTCCCTACTTAACACAATGTTGATGTATCCCCAGGCTGG
CCAACCTAATGTGTCGTCACTCCAAGCATCCAGTGTGGTACTCGGAATTC
GCGTACATTGGGAACAACTCCCATTATGAGGACTCTCACGGAAAACCGCA
AGGTAAATTCTCTTCTGACACTATATAATAGAGGATCAGCCGTTAGTCTT
AAAAAATCGTAGAACAGAAAAAGCATTTTGTGGTCAGTGGATAGCTTTAG
GGGTTGTTTATCAAACATACATGTGTTAATAAATTATTTCACTGTGCAGG
TGCGGCCCACCACGACGACCTGCTGTACCTGTTCACGCTGAGCTACCGGT
TCCCCGTCATCTCGCCGGACAGCCAGCACTCGCACGTCGTCGACGAGATG
ACGGCGCTCTGGTACAACTTCGCCAGATATGGGTAAGACACCAGGCACCA
CATCAACAATCATCATAGGTATTACTTTTGTAAAGATGGAAAACTACCAA
CGTTTCCTCCCGCTCTAGATGACGGTGGCATTTTGGTAGGCCTTTGTAGA
TCTTGATTTATCGGAGATTCGGAGTTGCAGTGTTTGAGATAAGGTGGTGG
GCCATTGTTATACCCTGGCTGACGAGCAGTCGTCACCTAATGGTAACCGC
ACATAAACACCTTTAACGCCACAGGTATTACAAGTACATTGCCGGCCTTT
TGAGGAGTTTGAGATTGGAGGATTTGACTTCCTCGAAAAACAAATATCTA
CCTATGCTTAAATATGTTTGATTAAAGTTGTAAAGGAATTGTTTGATTCC
CACAGAGACCCGAACCCGCGCGGCGACACGCCGGAGCTGGGCAGGCTGCG
CTGGCCCGCCATGACAGCGGCGGACAGGAGGTACCTGCACCGCGGGCCGC
AGCTCCAGGTGCGGCAGAACTTGTTCGAGGAGCGGTTCAAGGTGTGGGAC
GACTTGTACCCCATACAGTACTGAGGACTGTAGCTGAACTAGCTGAGACT
AGCGTGTTTTTACACAGAATATAAAAATGTTAATAAACTAATTCAGAATG
TTATAATTTTATATTGTAAAGTTTTGTACCCGATTTTAAATAAAT
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Coding sequence (CDS) from alignment at SFRU_RICE_016335:3..3097+

>SFRICE023343-RA ID=SFRICE023343-RA|Name=SFRICE023343-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1512bp|location=Sequence derived from alignment at SFRU_RICE_016335:3..3097+ (Spodoptera frugiperda rice)
TACCGCGGGATACGGTACGCGGACCCACCCGTCGGGGCACTGCGGTTCCA
GCCGCCGAAGTTGAAGCTGCAGTACGAAGGCGTAGTGGACGCGAGCGAGG
AGGGCCCCGCCTGCCCTCTGCCGGCCCCTCCCACCTACTACGTGGACGAG
GACTGCCTCACTGTCAACGTCTACACGCCGACACACAACAGCACCAAAAA
GCTCCCCGTGATCTTCTTCATCCACCCCGGCGGGTTCTACGCGATGACAG
GCCGCAGCGACCTGGCCGGCCCCCACTACCTGCTGGACAGAGACGTAGTT
CTCGTCACCATCAACTACAGACTTGGATCCTTAGGCTTCATGAGTACGGG
CGATGCACTCGCCCCCGGTAACAACGGCATGAAGGACCAGGTGGCCGCCC
TCAAGTGGGTGCAGAGGAACATCGCGGCGTTCGGCGGCGACCCGAACCTC
GTCACGATCACAGGCTGCAGCGCCGGCTCTATCAACGTCATCCTGCATAT
GATCTCGCCCATGGCCAAAGGTCTCTTCCACCGCGGCATAGCAATGAGCG
CGTCTCCTGTAGGCAAAGGAGTGGAAGCTATAACTCATCAGCGCCACCTC
GCAGTACGCCAGGCACAGATCCTCAACTGCCCGACTGACAACTCGTCCGC
CATCGTCGACTGTCTTATGACCAAGCCTTGGAGGGAGCTCGGAGACTCAC
TGCCTAAATTCTGGGAGTTTGGTGAAGGTGACCCAGTGGGTCTTTGGGGG
CCGGTGGTAGAGCCAGATTTCGGGCAGGAGCGGTACCTGCCTATCAATCC
ATTAGATGCCATTAAAGAAGGCAAAATGCACACCGTGCCACTCATCGTGA
GTCAGACTACTGACGAATTTTTCTGGAAGGCATTCCCGGTCTTACAAAAC
GAAACGCTTCTGAAGGCAATGAATGAGGAGTGGGACAGAGTCGCCCCCAT
CTCGTTCATGCTACCGATGGAGAACCGTGCCGCGGCGGTAAAGAAACTTA
GAGAGGTGTACCTCAAGGGGAACAAGTTGGCCAATGATAAACCAAGTGAG
AAAGCACTCGGACAACTTTATGGAGACTCCGTTATTGGGTTTGGAGTACA
CAGGCTGGCCAACCTAATGTGTCGTCACTCCAAGCATCCAGTGTGGTACT
CGGAATTCGCGTACATTGGGAACAACTCCCATTATGAGGACTCTCACGGA
AAACCGCAAGGTGCGGCCCACCACGACGACCTGCTGTACCTGTTCACGCT
GAGCTACCGGTTCCCCGTCATCTCGCCGGACAGCCAGCACTCGCACGTCG
TCGACGAGATGACGGCGCTCTGGTACAACTTCGCCAGATATGGAGACCCG
AACCCGCGCGGCGACACGCCGGAGCTGGGCAGGCTGCGCTGGCCCGCCAT
GACAGCGGCGGACAGGAGGTACCTGCACCGCGGGCCGCAGCTCCAGGTGC
GGCAGAACTTGTTCGAGGAGCGGTTCAAGGTGTGGGACGACTTGTACCCC
ATACAGTACTGA
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Synonyms
The feature 'SFRICE023343-RA' has the following synonyms
Synonym
SFRICE023343-PA
SFRICE023343
maker-SFRU_RICE_016335-augustus-gene-0.4-mRNA-1