SFRICE004973-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE004973-RA
Unique NameSFRICE004973-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_019257contigSFRU_RICE_019257:27189..39621 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE004973
eAED0.14
QI0|0.87|0.77|1|1|1|9|512|639
AED0.14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE004973SFRICE004973Spodoptera frugiperda ricegeneSFRU_RICE_019257 27189..39621 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE004973-RA-exonSFRICE004973-RA-exon-9Spodoptera frugiperda riceexonSFRU_RICE_019257 27189..27914 -
SFRICE004973-RA-exonSFRICE004973-RA-exon-8Spodoptera frugiperda riceexonSFRU_RICE_019257 28619..28902 -
SFRICE004973-RA-exonSFRICE004973-RA-exon-7Spodoptera frugiperda riceexonSFRU_RICE_019257 29311..29486 -
SFRICE004973-RA-exonSFRICE004973-RA-exon-6Spodoptera frugiperda riceexonSFRU_RICE_019257 34166..34399 -
SFRICE004973-RA-exonSFRICE004973-RA-exon-5Spodoptera frugiperda riceexonSFRU_RICE_019257 34556..34802 -
SFRICE004973-RA-exonSFRICE004973-RA-exon-4Spodoptera frugiperda riceexonSFRU_RICE_019257 36262..36396 -
SFRICE004973-RA-exonSFRICE004973-RA-exon-3Spodoptera frugiperda riceexonSFRU_RICE_019257 37749..37944 -
SFRICE004973-RA-exonSFRICE004973-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_019257 38957..39151 -
SFRICE004973-RA-exonSFRICE004973-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_019257 39383..39621 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE004973-RA-three_prime_UTRSFRICE004973-RA-three_prime_UTR-19Spodoptera frugiperda ricethree_prime_UTRSFRU_RICE_019257 27189..27700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE004973-RA-CDSSFRICE004973-RA-CDS-9Spodoptera frugiperda riceCDSSFRU_RICE_019257 27701..27914 -
SFRICE004973-RA-CDSSFRICE004973-RA-CDS-8Spodoptera frugiperda riceCDSSFRU_RICE_019257 28619..28902 -
SFRICE004973-RA-CDSSFRICE004973-RA-CDS-7Spodoptera frugiperda riceCDSSFRU_RICE_019257 29311..29486 -
SFRICE004973-RA-CDSSFRICE004973-RA-CDS-6Spodoptera frugiperda riceCDSSFRU_RICE_019257 34166..34399 -
SFRICE004973-RA-CDSSFRICE004973-RA-CDS-5Spodoptera frugiperda riceCDSSFRU_RICE_019257 34556..34802 -
SFRICE004973-RA-CDSSFRICE004973-RA-CDS-4Spodoptera frugiperda riceCDSSFRU_RICE_019257 36262..36396 -
SFRICE004973-RA-CDSSFRICE004973-RA-CDS-3Spodoptera frugiperda riceCDSSFRU_RICE_019257 37749..37944 -
SFRICE004973-RA-CDSSFRICE004973-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_019257 38957..39151 -
SFRICE004973-RA-CDSSFRICE004973-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_019257 39383..39621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE004973-RASFRICE004973-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_019257 27701..39621 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE004973-RA ID=SFRICE004973-RA|Name=SFRICE004973-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2432bp|location=Sequence derived from alignment at SFRU_RICE_019257:27189..39621- (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
GTGACGGGAGCATGGCGCCGCCTCTCGAGTACGGTCAGCGAGTCAGTGGG
TCTGAAGCATGCGCTACGTCGGCTGCAGGCGGTACCGGCGCGTGCGGCTC
GGCTGGTGCACGCACTGGTAGATCGCATGCGCGTCGGAGGCGGGCCCATT
GTCTTCACGCAACTAGGAGCACTGCGTGGACGCAAGCTTGTTACCAGGAC
CACAGCTCAAACGCCATACTATAGCTTTAAGGGTATAAGGTATGCCCAAC
CACCCCGAGGGTCTCTCCGTTTCCGGCCACCAGCCCCCTTGGAGCCATGG
TCAGGGATACGGGACGCGCTGGAGGAGGGCGCTGTCTGCCCTCATCGATT
CATGCTCTTCGACACCTACAAGGGAGACGAAGACTGTCTCTTCCTCAACG
TGTACACTCCCGCACTCCCTGATAAAATGTCTGGGTACAATCCAAAGTTA
GCAGTGATGGTCTGGATCCACGGTGGTGCCTTTGCTATGGGTTCCGGCAA
TGCATTCCTCTACGGGCCAGATCATCTCGTCGGCGCAGGAGTGGTGCTGG
TGACGCTCAATTACAGGCTCGGCGCTTTGGGCTTCTTGAGCCTCGAGAAC
GAAGAAGTTTCTGGAAATATGGGCCTGAAGGACCAAGTAATGGCTCTGAA
ATGGGTGCGGGACAACATTGAGGCGTTCGGCGGCGACCCGGCGCGCATCA
CCATCTTCGGCGAGTCTGCGGGAGCCGCATCCGTGCATCTGCACATGTTG
TCACCGGCATCACAGGGTTTGTTCCATGCTGCCATTGCGCAAAGTGGTGT
GGCGGTGGCTCCATGGGCGCTCGCGCACGAACCTCGAGCACGAGCCTTCG
AACTGGGCAGGGAGTTGGGCATCGACACCAACAACACCGCTGAACTATTA
GGCAAGTATTTATTTTTCACAAAATACGTTTCTAGAACAAAGAAAATTAT
AAAAAATATCAAAACTAGAAAATCAAACACTCCCTTATTTAGCCCAGGAT
TGTCTAACAAAAGTTACCTCCGCGCGACGCCAAGCGAGTTGCTTGTCAAA
GCGGGGGCTCGGTTGTCAAGTGCCCCGGGCAAGTCAGCTGACTTACAGAG
CACCGTGGCGCTGCCCTTCTTGCCCACGTTGGAGCCAGAAGGACCTGATG
CCTTCCTCACCAAACCTCCCAAAGAAACTCTACCCGGCGCCGACGTTCCC
TTCCTAACTGGATATAACGCACAGGAAGGCATTATATTGTTTCGACGTCT
CCAACGTTACCCGAAGCTGTTGAGCGAGCTGGAGCATGAGTTCCGCCGCG
TGGTACCGCCGGAGCTGCTCGGCCATAACGACACCATCGTCGACAAGATA
TCAGACGCCATCAGGGCATTCTACTTCCAACAGAAACCGATCGAAAACAG
GAACATTGACAACCTCATTGACTTATTCACAGATGTGATGTTCCTGCGGC
CTGTTCTGGAGACGGTCCGCCAGCAAGTAGATAGTAATCGGACTAGTCCC
ACGTACTTGTACCGATTCGCGTTCGACGGAGCCCTGGGGCTCTTCAAACG
TATGCTGGGCATCACACACGCAGGCGCCTGCCATGGCGACGAGATGGGAT
ACCTGTTCTATTTCTCAAGACTCAACTACAGGTTGGATGATGATTCTCCC
GAGCTAGCTGTCTCACGGCGCATGGTACAAATGTGGACGAACTTCGCCAA
AACTGGGAACCCAACGCCGAGTGTGGACTACGAATCTGTAGTTGACTTCA
CCTGGCCTCAAGTGAATAGCACGGAACATATCAGCTATTTGGACATCAAC
GGTAACTTCACCATACAGACGGACCCTGAAGCCAAGAGAGTAAAGTTCTG
GAACTTTCTATACGAGAACTATGCTGCCAAACCAGAGGACGCCACTAACG
CAACTGTAGTTGACCAGTGAAATAGTACAATCAAGTGATAAGTGAATCTA
GGGTTTGAGACGCTCTAACTGCCAGTGTGACTTATGATCAAATACTCAAA
TGCTACTCAATTTTAAGCTTAATCTAAGTCTAATATTATGAGGTACGACA
ATATAAAGGTGACTTAAAATTAAGTAGTGTTTCAGTCTTCGGTGTTGATC
GTAAACTTACTAACTTATCACCAAGTGCCAAAATATGATAATGAATTCTG
TTAATGTGTGATCTCAAGTACTGGCGGCTAATAGTGGCGATTGATGGAAA
ACTAAGCATTACAGGAATGTAGGAAACAAACGAGTGAATGTGTTCGTTTC
TTAAGACTATTCGTGAACTTTCTCTCGTAACGCTTATTCCAATTCCGATT
AAAGGAAATGGAAAATTAGCTAACTTTACTAACTCTTAAATGCGATGTAA
ATAATAGATTTATTTAGATTAAGTATCTTATATATCTTTGGAAAGTGTCA
ACGCCTGTTAAGTTACCATTTCTAGAATAAAC
back to top

protein sequence of SFRICE004973-RA

>SFRICE004973-PA ID=SFRICE004973-PA|Name=SFRICE004973-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=640bp
VTGAWRRLSSTVSESVGLKHALRRLQAVPARAARLVHALVDRMRVGGGPI
VFTQLGALRGRKLVTRTTAQTPYYSFKGIRYAQPPRGSLRFRPPAPLEPW
SGIRDALEEGAVCPHRFMLFDTYKGDEDCLFLNVYTPALPDKMSGYNPKL
AVMVWIHGGAFAMGSGNAFLYGPDHLVGAGVVLVTLNYRLGALGFLSLEN
EEVSGNMGLKDQVMALKWVRDNIEAFGGDPARITIFGESAGAASVHLHML
SPASQGLFHAAIAQSGVAVAPWALAHEPRARAFELGRELGIDTNNTAELL
GKYLFFTKYVSRTKKIIKNIKTRKSNTPLFSPGLSNKSYLRATPSELLVK
AGARLSSAPGKSADLQSTVALPFLPTLEPEGPDAFLTKPPKETLPGADVP
FLTGYNAQEGIILFRRLQRYPKLLSELEHEFRRVVPPELLGHNDTIVDKI
SDAIRAFYFQQKPIENRNIDNLIDLFTDVMFLRPVLETVRQQVDSNRTSP
TYLYRFAFDGALGLFKRMLGITHAGACHGDEMGYLFYFSRLNYRLDDDSP
ELAVSRRMVQMWTNFAKTGNPTPSVDYESVVDFTWPQVNSTEHISYLDIN
GNFTIQTDPEAKRVKFWNFLYENYAAKPEDATNATVVDQ.
back to top

mRNA from alignment at SFRU_RICE_019257:27189..39621-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE004973-RA ID=SFRICE004973-RA|Name=SFRICE004973-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=12433bp|location=Sequence derived from alignment at SFRU_RICE_019257:27189..39621- (Spodoptera frugiperda rice)
GTGACGGGAGCATGGCGCCGCCTCTCGAGTACGGTCAGCGAGTCAGTGGG
TCTGAAGCATGCGCTACGTCGGCTGCAGGCGGTACCGGCGCGTGCGGCTC
GGCTGGTGCACGCACTGGTAGATCGCATGCGCGTCGGAGGCGGGCCCATT
GTCTTCACGCAACTAGGAGCACTGCGTGGACGCAAGCTTGTTACCAGGAC
CACAGCTCAAACGCCATACTATAGCTTTAAGGGTATAAGGTATGTTGCTA
CTATTAGAACCTTTTACTATTTAAGAATTATATATTACTCAGGACTGTGA
TTTTTTTCATCAAATTATTCCATCTATGTCTATCCTTTGCAAAATAACGA
GCATCATGGAAAATTGCGCAAGGAGTAACAGATCTTCGTAAACGAATAAT
TCAGAATAAATACTGTAAATTCTTAATTACCTACTTGGTTCAGAGTAAAT
AATGTAAATCGCCCTTCAAGGTATGCCCAACCACCCCGAGGGTCTCTCCG
TTTCCGGCCACCAGCCCCCTTGGAGCCATGGTCAGGGATACGGGACGCGC
TGGAGGAGGGCGCTGTCTGCCCTCATCGATTCATGCTCTTCGACACCTAC
AAGGGAGACGAAGACTGTCTCTTCCTCAACGTGTACACTCCCGCACTCCC
TGATAAAATGTCTGGGTAAGTATTTTTTAAAATATGTAATCATTATATTT
AGTTTTATCTTATGTTCTAATCCCGTGTTCATTATTAGCATTCGCTGCTG
AACAAAGGCCTCCTTTGTAACTTAGGCGGAAGTTTACCATAATGCTTATA
CTGGGCAGTCATCATGACCATCACTTGGTGATTAATCGCAATTTTAAGCC
GTACTGGGGGCCAAATTGAATCTATTTCAGTTTAACTCAGTAAGGGCTTT
TAATGTAGTTTTTTTTATGTCCATGGAATGCTTCAGGACTTGACCACCAA
GCTAATCAGGTTTTTGTACTCTTTCTAAACGCCATTTGGCGGAAATATTA
CACCTGTGTCATTAATCTAAATTAATTACAGTTTTAGATCTAGAGAACTC
ATACATACATACATTACATACATACATGCCTAACCTCACGTTTGTTTCCT
ATGGGACTAGGCCAACATTGAGGTACGCCAATTGCGCCAGACAACTCTTA
CTGAGATTTTCGAAATCCAAAATAAAGCCCAATATTGGATCCGATGTTAT
TGGCTTATTGTGAAATAAAAAATCTGATAGACTCCATAATTACAATAATC
GAAGCGGTCGCGACTTTTGACCTCGCGTTACCTGCTGATGAATGAGATTA
AAGATTCTCTGTTGTTGAGTAATAATCGGACTTTTTAAGGCAACAACGTA
TCAGCGAATGTAGCTCGCTCACGGTATGATCATATAAGAACGTTTATTAA
AATTGTTTTTAAATTAAAATATAAATTACTTGCCGAAGGTAGTGGTAAGT
AAGCGATCATGAGTGACTTCTCCATTATATACCATAGTACTCTTTGGGAC
AAAACTTATCCGATATGCCTTTAAATATCTCGTTAGGTCTCTAGATTGGC
TGAGCACTTCCATTTAGTATTCCATTAAGAAAGCTCGTTGCTTCCACCGG
TCCACTTTAGAAGCGAATGTCAGTTTTGGGGTATTGTATTGTCAACAATA
TACTAAATTGCTTTTCTATTTGACCAGGTACAATCCAAAGTTAGCAGTGA
TGGTCTGGATCCACGGTGGTGCCTTTGCTATGGGTTCCGGCAATGCATTC
CTCTACGGGCCAGATCATCTCGTCGGCGCAGGAGTGGTGCTGGTGACGCT
CAATTACAGGCTCGGCGCTTTGGGCTTCTTGAGCCTCGAGAACGAAGAAG
TTTCTGGAAATATGGGCCTGAAGGTACACTTGAAAGATATTGAAAGTTTC
TACTGATTTAAATATTGATTTACTTTAAGTAGGTATAACATCTTTACCTT
TATTATCTCTTTAAAACCTCCTCTTTTTTTGAGGGAGGAAAATCATCCAA
TGACTTCACCCGCTTTGAGCGAGGCGAGAGGGAATGCCAGACTCTTACTG
ACTAAAAACCACCCATTCCTACTCCTGCTTTTCCAACCGGAGCCCCGTTA
AACCCGCTAGGTAGTCCGCAGTTCCGGATTCGGACATCAGCCCTACTGGG
CCCCATCACTAGCCTCTTATTATTTAAACTTGAAATGTTTGAATCCAGAT
ACTACGTGCTCATCAGTCATATGCTCGTAAATACAAAACAAACGTTACTT
TTAACAAAAGTGACACAATGTTTGTTAATTTGTTAATGCAATTCTTTACA
CGTAGATTTTCGTAGTCTTCGTGCGAGGCTAAAATGTAGTTGTTTATAGT
TTCATGTCTTTTCACAATGCAATGCCTTTACTAACGCCTTTGAAGTTGGT
TCACTAATCTTTGCGCAAGTCCCCAGCGGGTGGTTTGCATTTATGAACGT
GTAGGTACCAAGTACATACCTACACATTCATTGATATATACTGTAACTAC
TGAATTACTGAAATATCTTCATGATATTTATCATATTATGCAGTTTCATA
TAAATATTGTGTGTCTCAGCATATTATACTTAAGATGTTATTATTTGTAT
TGTAACTCTCGTCATGGTTTACCCATTCTGGCCAAGTTCGCAATATTTTG
ACGCAAGTTACACTGCAGCATACATTATGTATCTAAAAATGTTATTACGA
AATATCTTGAGCATATTTGCGCTAAATTTCGATTACCTTAAGGTTGATTA
CTATTGTTTATAGGTATCAAGTACTTATAATGTTATTGCAAAAGCAATGT
AATCACGGTGCCATTAACAGCATATAATTATATCAGAATGAAGCGAAATA
AAGATAACAGAATGGCCGAATCTTGATATCGGACAATGATTAGTTCGCTA
ATTGTTTACAACATCAAGATCGTGGTTAGGTAACTTGAATGAAAGCGATT
AGGCCGTTGCACAGTTGTTTTGTGGCCGACTCGATGACGTGCTCGTCGCG
TTCACGCTCGAGTCAGCCACACGCACACGTGGCCTGCGAACACGTTGCAA
TTAGGTGTAAAATATACGGTTCCAGGGTCGACCAAAATATTATATTTGGA
TGTATATATTCGTAATTCTCAGAAATATCTTATTCTTACTCACTTAACAT
TTGGATCACGACCTATCAAAAAGGACTACCCGAAAGAGCATTGTCTTAAT
ATTATTATATGTATGTATCTCAAAGGACCAAGTAATGGCTCTGAAATGGG
TGCGGGACAACATTGAGGCGTTCGGCGGCGACCCGGCGCGCATCACCATC
TTCGGCGAGTCTGCGGGAGCCGCATCCGTGCATCTGCACATGTTGTCACC
GGCATCACAGGTTTGTTAGACTAGAAATAAAATTAAACACGAGTAGCCAT
CATTTCTAGAGGACTTGAATTATATACCTATCTGTATATATTTATATTTT
TGATGCTATCGATAGATCAAGGTACCAACATCTATCTAATTAAAGAAATC
AAAGCAACAACATAAAGCTTCATAAACAGAAAATATGTCTCAAAAATATG
TTAAAGTGAATACAAACATGTGCTCGAGAACTTCTAGAAACCTTGCATAA
TGTTATTAACCTACACTCTAATAAAAGTAAACATGTTTGTGATCTAAACC
TATAGGCAAAATTCCAATGATGTAAGAATGCCATTAATTATGTGACATAA
TAGTTACTCATAATAGTTTTAATTGACTACTTTACCTATTAATTATAGTA
TACTTACATATGCCTTCTTTTTGTGGAGGAAAAATCATCCAATAACTTCT
CTTGCCTTGGGCGAGGCGAGAGGGAATGTCAGACTCTTACTAACTAAAAA
GCACCCCCGGTAACCCGCTAGTCAATCCACAACTCCGGGTCGGACTTACA
TATGCCTCAATTCATACATTTACTCGTGACTGATACAATTACGAAACGAA
GAAAACATAATCCAATATTTCATAAATCTGGTTCACCTATCAGATAGACC
TCATTTTTATGTCCTGAGACACCCCCTAGGTGTTCAGGAACTATGATTTT
ATGGATGGTTAAATGGTTATTGCGTGAAAGATTGACAAACACGCATAACT
ATCTGTTCTCACAAACTTTCACTATATTATAGTATTGATAAACAAAACTC
GACCTTGAAGCTTTTATAATGTGCTAGTGACATTCAACCTTATGTAGGTA
GCACCTTATGTACAGCTATCGACTGTAGGTGGTTACGTCACTACGTATTA
TAACCATTAACGACAATATTTTAATACATACAGGTTTTTCTATGGGAACA
AGAATGCATATTATTATGTACCTTTGTATGTAATTAGATTACTTATATAG
GCATTGAGGAAAACGTAGCTGGAGTAGGTATGTAAGCAAATAGAGCATTC
CAGCGAGTAATATATGTACATATGTACTTATACCTATTTTCTTATCTCAT
TGAAAAGGTATTTGCCCTTTTTCTTATGTTTATTTAATTGATAGAATCCA
CATAAACAACTTCATACTTCTTATCTCTTGTACGTTTCATAAATAAAACG
CGTTTATGAAATCAATTTGTATGTATATGTAATATTGTTGGAATGGCTCA
ATATTCGTAAGTATCTGTTAGGTTATTTAGGTTTCAACTTGTGTGTCATA
TTTCATAAGTGTTGCATGCACTCTTTTGTTTGTCTACGACACACACATAA
AATCGTATATGAATTGTATTAAAAATGTTATTCAAAAAACGACTTTGTAT
GTTTTCAAGCCTCTGATGTTTGAAAAACTATTGTTTATTGTAAATTTTAC
AAAATTGTTCTCATGGCAGGGTTTGTTCCATGCTGCCATTGCGCAAAGTG
GTGTGGCGGTGGCTCCATGGGCGCTCGCGCACGAACCTCGAGCACGAGCC
TTCGAACTGGGCAGGGAGTTGGGCATCGACACCAACAACACCGCTGAACT
ATTAGGCAAGTATTTATTTTTCACAAAATACGTTTCTAGAACAAAGAAAA
TTATAAAAAATATCAAAACTAGAAAATCAAACACTCCCTTATTTAGCCCA
GGATTGTCTAACAAAAGTAGGCTTACCTAAATAGAAGTAGCGCGATATCT
ATACTATCAACTACCGATACGGGTTACTTACACTATCAACTACCGATATT
GCAACTGTTACTTAGAACAAGAATAAAGCATAATAGTATCTTCTGGTCTT
AAAGAAAATTGTTCTTATTTAGGTTACCTCCGCGCGACGCCAAGCGAGTT
GCTTGTCAAAGCGGGGGCTCGGTTGTCAAGTGCCCCGGGCAAGTCAGCTG
ACTTACAGAGCACCGTGGCGCTGCCCTTCTTGCCCACGTTGGAGCCAGAA
GGACCTGATGCCTTCCTCACCAAACCTCCCAAAGAAACTCTACCCGGCGC
CGACGTTCCCTTCCTAACTGGATATAACGCACAGGAAGGCATTATATTGT
TTCGACGTAAGTATTTTGTTTATTCTAACTTTCATTGTCATGTAGCTATA
GTTTATAAAACAGCATTTAGACGAGCTAGCTTATGAGTCTGTATTCTAAT
TTAAAAAAAGTCCAACGCGGTAACTCGAACTCGATACCTTTCCAACCTAC
GAAGCCGCTGGCAAAGGTTATGTTGTATAATATTACATAAAATACTGTAA
AGGAACTCTATACCTATTGTAAACATACTGACTAAGCTATAGGAAGGTAA
AACTGAAACTGGCAACAAATTGACCCACAAGTAGTGTTACGGATGATTGC
GTTGGTAACAACCCAACATATGTATGTATGTAGGTACATAAATAAATAAT
TAATCAAAGCTATTGTGGTCTACATCGACCCGGTAAACAAACAACATAAA
CAATAAGTTGATGAATTATGAGGATATTATCCAAGTATAGTGTTTAGAGA
AACTAGAAACTATGAATCTGTTCATATTTTAGATTTCATTGAAAAATAAA
TATTAATCAATATTCCTATTTGTTAAAATATATCCCAAATAAAAAATTTT
CATGTAACATGTGGTGATCATATTTTATGTAGAGCAAAGTTCCAAGCCCC
AATTTTACACTAAGTTTCGGCAAAATTCTTTAGCCGCAGCTCGTAGCGCT
TAGTCCGTAGCACGTAGTCAGTAGCGCGTAGTCCGTCGCGCGTAATTCGT
AGCGCGTAGCAACGTCTTCCTGACGATTATTTTCTAGGCGCGGGATCCGT
GGGCTCAACTGGCGAGTCGCATCGTCGACCACATGGAAAGAGTTTAAAAA
TTCAATGAGTCATTCAAACGTCATTCAATGACGTCAAACTCAATTTGTTT
CTTTTCAGTTTTCTACCTTAATGAATATAAGCGGATGACGGGAAATGACG
GGGTAATAAACGCTAAAAATCTATATAGTCCGTCAGTTAGGTAATGATAA
AATATTAGTCATTTTTTTATTGTGTCATATTAGATAACAATACGTAGATA
AAACGAGTCAAAGTTTAGGAGTGGGAGCAAATTCATCACGCGATATTTCT
TATCTATATACATTCGAAAGCATTTGTTTCCGTAAAAAAATAAAGTCGTG
TCTAATATTTTAAAATAATACATACAAGACCGGCATTAAAATAAAAATTA
GTCATCTACTATTACGTGAGTCAGCCAAAAAACGTAACTACTCATATTTT
CCCTAGATCTTGCATTTTTAGTGACGAAATACACGTTGCATTGGTTTTGT
TGGGAGGCACTTGTATATCAGGTTCGTCAGGAAAATTACATTTCCTGGTA
AATTGTGGGAATACCCACTCTATAACCAAATTGGAAAACTCAGAGCAGAC
GTAATATCTTATTACGTTAAAACTCTACAACGTCATGCTTTTTATCAACA
AAGGGGTAGGCAAAAGTGTACATTACGGCATGTAATGCCGCTTTATTGGC
CTAATGATTAATAATAATACATACATGAATTCCCCTTAAAAAAAATGAAC
TCACGATTGCTGCACATGCCTAATTAACATGCCAGCTAAACATTTACTAA
AAGCAATTTTCGTTTAATAGCTTTAAATAGGTGCGCAGGTTTGATAAATC
CTTGGCGACATTTTGTAATCCAGCTTAGGTGAACGGAACTGACCGCACTT
TAAGCCCTTCACAAATCCTGTGCACTCACAACTTTTGCGACACACTGCAA
TATTACTGTGTACTTAGTTTGGAAAATAACTTAATTCATTTACACCGGCT
TATCTTGTGGTTTTGCAGAAAATACTTAAGTAGCTGTATGTGTGTGTAGT
GCTCTCTAACACTACATTCACACACAGCACTTAAGTACATACCTAATAGT
TCAGAGGTCATAAGTTTTGCCAAAGTTTTCTTCAGTGCTACTTATTGGAT
CAAACATTCAAGAAAAGAGCATACTCATTTTTAAAATGGCCGTCAACACA
CCTGTGACTCCTCTGGTGATGCGGGTGTCCATTGGCGGCGCTGATCGCTT
ACCATCAGGCGACTCGTTTGCACCGATGCCTCCTATTCCACAAAAAAAAT
TGACTAAACATTGACGGCATAAGTCAAAAGCTATAGTACAGATTACTAGT
GATTCGATTCTGTCAGTTGTATTGTGATAAAAGATAACTATATAGGCTGC
TTGAAAGGGCGATAAAGAACAGGGCACCTAAAACGCCCCCAAATAAATTG
AGATAAAGGCAGGAAGAAAACTAGTAGCTTAAATCGCCATTGAATTTATA
AGGTACTCTATTAATCTATGTTTGTTATTATTGTACATTGATATCGTACG
TAAGATGAAGGCCATAACGAAATGTTTCAGTGATAAGATAAGAATTTACA
ATGAACGAAATACTTGAAAATAAGTTTTATCTCCCGTAGCAACATGCATG
AGAAGATTTAGTCGTATCGTATGATCATTCAACTAAAAGGGGGGGAAATC
ATTCAATGGTTTCTCCCGTCTTGGGTGAGGCGAGAGGGAGTGTTAGACTC
TTACGGATTAAAGATCACCCCGTTGCTACTCTTACTTTGAGCCTGAACCC
TGGTAACCCGTTACGTTACGTTTGTCTTTAGCTTCTATAGAACTATGATT
ATCGTGGCAATTAAAAAAAAAAACAGTCGTCTTTCAACTATGAACGTCTA
GACGTCATACTCGAACTCAACAGTCGATATATGTCGTCAATAACGATAAT
TTAATTACCGAGACCTGCAAGTCAGGTTACAAAAATCGAATTATCGGCCC
CGTTATTCAATATCATGTTAATAGGAGACAAATATTGCAAACTGTTTGTT
CATTAGAATCACAAGTCACGAAGTAGAGTTATGTCATGCCCTCTGTACCG
AAGCTGCCTCCAGTTTTCTATGACTCTAATTTCACTGTGACTCATATTCG
AGTTTCACAAGCAAAGGTCAGTTGTGACAGTCATTTCCCTAGAATATTCA
CGAATCATCAATTATTGTGTGTGTTTATTTTTGAGATGAAACTACATAAT
ATTCGTTTACCAGGATAAAGTGATTCAATTGGTAATTTTATTTTCCAAAA
TATGTAATAGGTAAATAAAGTTGACATTGGTCATCATATTGCGTAGATAT
ACTTAACATTAGTCAAACAAAATAAAAGCTTAAAACTAAGAAACACCTTC
TTAGAAACGACGCAAACAATCCTTGCTTGCTTCTGAAAAAAATGACATCA
GAATCAATAATTCTACATCAACCAAGGACATATAAAACCTAAGTAGACAC
TATTATTAAAAAAAAGTAGGACACGTAATATTGACAAGTGATTTAGCATT
GGTAGTTAAAATTGAGTGAAAAAACATATATATAGTTATTGCGGTGATGT
AAAACGTTACATAATGTTCTAACAGTGTCCAAAGTAACCGGCAACAAGCA
TGCGACCGCAGTTGGACCGGGTCGTTACTCGTATTTACATAATAAAGTAA
CACATGCGATCATATTCACTGCGTGCCACTTTCTCACGACAATAACATTA
CTATAACAATATCCTTCTTGAGGTTTACGTTACAACACCGTATTCGAAAT
TCGAACCTTTGTTTTTTTTATTTTACTCATTTAATGTCGGTACTATTAGA
AAAGAAAATCGTTTAATAAACAACATGGAAAATATGTAGTACTTATTTTA
GTTTGCTTATGTAATTATTACAATTGGACCTAGTTTAGGATAAAATGGCT
TACAATGTATATTAGTTGAGTATGGTCAAGATGTGTAGAACATAGTTAAG
TACCTTACAGAGATATAAAGTATAAACTATCTAGAGCTAGGTACTCAGCC
GTGTAGCACGTAACGAATCAGATACAGTATCCAGTGAGTACGTAAGTACG
ATCCCGCTGCGACCCGTTATTCGCGGAAGGAGCGCAGCGAGCAGTGACTA
TGGATATGGATAGATTCATACAATAAGCAGTAACTAACCAAAATTACATA
AACTTGGTAGGGCTTTCCACAAGGAAAGCAGATAGCACTCGCAGTTGGTG
ACTCTGCTGGTAAAACCAACCTAATATACTTTTATTTAATTGATGTTACC
TAATTAGGTAATGGGAAGAAATAAAAATTTCTAAAAAGAGTTTTAACCAC
ACTGGGATTTCCCTACAGAAAACCAACCGCATTTATTTGGTATCGGAGAT
TGCGCTAAATCCTTCGGCTAAATCAAAGGAATTGCTAAAACCTTGATTTT
AATTATCGATTTTATTATCAGATATGTTATTAACTCGGATTGATAATATG
ATGAATTATGAATTTGATTCATGCATCGGACCAATGCGACATATCCCGTT
CACACATATACAGGGTTACGTATTAAGTCGACCTAAAATCTTTTAAGCGA
CGATAGTTTCCATCATTCCTGACCGATTTTACTAGGAAATCCCTTATCCT
AAACTTAACCATTCTCAAGTTGTTATGTACGTGTATAAGAAGGATAAATA
AATAATAACATATTACCGATATAAACAAACAACTGCTTTCCTTATGTTTA
TTAATGTTATTTACATGATGCTTGAACATACAGACAGACAGACAGACAAA
AATTTTTTTAATCACATATTTGGGTTTGGTATCGATCCAATAACACCCCC
TGCTATTAATTTTTTCCATATTTTCAATGTACAGAATTGACCCTTCTACA
GATTTATTATATGTATAGATTGCGTAATTTCTTAGGTCTCCAACGTTACC
CGAAGCTGTTGAGCGAGCTGGAGCATGAGTTCCGCCGCGTGGTACCGCCG
GAGCTGCTCGGCCATAACGACACCATCGTCGACAAGATATCAGACGCCAT
CAGGGCATTCTACTTCCAACAGAAACCGATCGAAAACAGGAACATTGACA
ACCTCATTGACGTAAGATTACATCAGTTTAGTTATAGAATTTAGATTATT
GTTATATACAGTTTGAAAAGTTATTAGGTGTGCAGTAGTACATCTATCAT
GAGTTTGAAACAATATAGTATTTGACGATAGTCACTAGCGACGACGTAAA
TTTTTTTATGCCAAATTCCACAAAGTCTCTACCGGCCACCTGTGGGACTA
AAATTTGCTTCAAACTTAAAATTCGATTAATCGAATCATTATTACCATTC
ATTCCGATCAGACTAATACTTCATAGTTAGGTACTGTTTTTGTATTAAAT
CAATATTTTTTTCTAACTACATAACAAAATAACATCATTTAGCTAACTGT
ACGAGTATAATTCGTTTTTCGAGATTAATCTTAATCACCAGATCAAATGA
TATAGTGTTTTGTGCTTAGTTATTCACAGATGTGATGTTCCTGCGGCCTG
TTCTGGAGACGGTCCGCCAGCAAGTAGATAGTAATCGGACTAGTCCCACG
TACTTGTACCGATTCGCGTTCGACGGAGCCCTGGGGCTCTTCAAACGTAT
GCTGGGCATCACACACGCAGGCGCCTGCCATGGCGACGAGATGGGATACC
TGTTCTATTTCTCAAGACTCAACTACAGGTTGGATGATGATTCTCCCGAG
CTAGCTGTCTCACGGCGCATGGTACAAATGTGGACGAACTTCGCCAAAAC
TGGGTAAGCAGTGCTATACATTACAAATTCCATAACACCAGCCTATTACC
ATTCCATAGCCTAAGTGAAATATGAAGCCAACTCAGAGCAGCTCAATATC
TGTAGGTGTACCCAACTAAATATATTATAGTATATCACAAGACCCTACTA
TAGCACAAGACCCTACTATTATTGAATAATAATATTGTCCATTACTTCTT
ATGGATTTTATGATATAATTCAAAATATTGAGAATGGTCATTTGCAACCG
CAAGAAATAACTTTCTAGAGGCCATTACTACGTTGTATTATGTTCCTGCA
CAAATACTCGGTTGCCATTGCTGACTGAGCGATTAGATAACTTCAGATAA
ACGTAATTGTTATCTGGTGGTCCGATGATGGATTGTTATTACTTAATAGG
GCCACTGCAAGAACACCGATACTCACGATAGGGAACAATGATAAAATCTA
ATTAGGTACACGAGAAATCTGGTATTAAATCTTGCTTGTGATTGAGATTA
TTGCGTCATAATTTTTCATTGATTGTAGATACAATAACAATAAATTGGGT
CTTGTATTAAACGATAACTGTGGAGGCTTTTCTAGATGCCCAATGTGTCT
CCTGTATTTCTCAGCTAGGAAGACGTATGGAGCAAAGTCCCATAATATCA
AGTTGGGGCTTGAACTTTACTATGTTTTATTTTTCTAAAGTATATTTCTC
ATTTTAGGAACCCAACGCCGAGTGTGGACTACGAATCTGTAGTTGACTTC
ACCTGGCCTCAAGTGAATAGCACGGAACATATCAGCTATTTGGACATCAA
CGGTAACTTCACCATACAGACGGACCCTGAAGCCAAGAGAGTAAAGTTCT
GGAACTTTCTATACGAGAACTATGCTGCCAAACCAGAGGACGCCACTAAC
GCAACTGTAGTTGACCAGTGAAATAGTACAATCAAGTGATAAGTGAATCT
AGGGTTTGAGACGCTCTAACTGCCAGTGTGACTTATGATCAAATACTCAA
ATGCTACTCAATTTTAAGCTTAATCTAAGTCTAATATTATGAGGTACGAC
AATATAAAGGTGACTTAAAATTAAGTAGTGTTTCAGTCTTCGGTGTTGAT
CGTAAACTTACTAACTTATCACCAAGTGCCAAAATATGATAATGAATTCT
GTTAATGTGTGATCTCAAGTACTGGCGGCTAATAGTGGCGATTGATGGAA
AACTAAGCATTACAGGAATGTAGGAAACAAACGAGTGAATGTGTTCGTTT
CTTAAGACTATTCGTGAACTTTCTCTCGTAACGCTTATTCCAATTCCGAT
TAAAGGAAATGGAAAATTAGCTAACTTTACTAACTCTTAAATGCGATGTA
AATAATAGATTTATTTAGATTAAGTATCTTATATATCTTTGGAAAGTGTC
AACGCCTGTTAAGTTACCATTTCTAGAATAAAC
back to top

Coding sequence (CDS) from alignment at SFRU_RICE_019257:27189..39621-

>SFRICE004973-RA ID=SFRICE004973-RA|Name=SFRICE004973-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1920bp|location=Sequence derived from alignment at SFRU_RICE_019257:27189..39621- (Spodoptera frugiperda rice)
GTGACGGGAGCATGGCGCCGCCTCTCGAGTACGGTCAGCGAGTCAGTGGG
TCTGAAGCATGCGCTACGTCGGCTGCAGGCGGTACCGGCGCGTGCGGCTC
GGCTGGTGCACGCACTGGTAGATCGCATGCGCGTCGGAGGCGGGCCCATT
GTCTTCACGCAACTAGGAGCACTGCGTGGACGCAAGCTTGTTACCAGGAC
CACAGCTCAAACGCCATACTATAGCTTTAAGGGTATAAGGTATGCCCAAC
CACCCCGAGGGTCTCTCCGTTTCCGGCCACCAGCCCCCTTGGAGCCATGG
TCAGGGATACGGGACGCGCTGGAGGAGGGCGCTGTCTGCCCTCATCGATT
CATGCTCTTCGACACCTACAAGGGAGACGAAGACTGTCTCTTCCTCAACG
TGTACACTCCCGCACTCCCTGATAAAATGTCTGGGTACAATCCAAAGTTA
GCAGTGATGGTCTGGATCCACGGTGGTGCCTTTGCTATGGGTTCCGGCAA
TGCATTCCTCTACGGGCCAGATCATCTCGTCGGCGCAGGAGTGGTGCTGG
TGACGCTCAATTACAGGCTCGGCGCTTTGGGCTTCTTGAGCCTCGAGAAC
GAAGAAGTTTCTGGAAATATGGGCCTGAAGGACCAAGTAATGGCTCTGAA
ATGGGTGCGGGACAACATTGAGGCGTTCGGCGGCGACCCGGCGCGCATCA
CCATCTTCGGCGAGTCTGCGGGAGCCGCATCCGTGCATCTGCACATGTTG
TCACCGGCATCACAGGGTTTGTTCCATGCTGCCATTGCGCAAAGTGGTGT
GGCGGTGGCTCCATGGGCGCTCGCGCACGAACCTCGAGCACGAGCCTTCG
AACTGGGCAGGGAGTTGGGCATCGACACCAACAACACCGCTGAACTATTA
GGCAAGTATTTATTTTTCACAAAATACGTTTCTAGAACAAAGAAAATTAT
AAAAAATATCAAAACTAGAAAATCAAACACTCCCTTATTTAGCCCAGGAT
TGTCTAACAAAAGTTACCTCCGCGCGACGCCAAGCGAGTTGCTTGTCAAA
GCGGGGGCTCGGTTGTCAAGTGCCCCGGGCAAGTCAGCTGACTTACAGAG
CACCGTGGCGCTGCCCTTCTTGCCCACGTTGGAGCCAGAAGGACCTGATG
CCTTCCTCACCAAACCTCCCAAAGAAACTCTACCCGGCGCCGACGTTCCC
TTCCTAACTGGATATAACGCACAGGAAGGCATTATATTGTTTCGACGTCT
CCAACGTTACCCGAAGCTGTTGAGCGAGCTGGAGCATGAGTTCCGCCGCG
TGGTACCGCCGGAGCTGCTCGGCCATAACGACACCATCGTCGACAAGATA
TCAGACGCCATCAGGGCATTCTACTTCCAACAGAAACCGATCGAAAACAG
GAACATTGACAACCTCATTGACTTATTCACAGATGTGATGTTCCTGCGGC
CTGTTCTGGAGACGGTCCGCCAGCAAGTAGATAGTAATCGGACTAGTCCC
ACGTACTTGTACCGATTCGCGTTCGACGGAGCCCTGGGGCTCTTCAAACG
TATGCTGGGCATCACACACGCAGGCGCCTGCCATGGCGACGAGATGGGAT
ACCTGTTCTATTTCTCAAGACTCAACTACAGGTTGGATGATGATTCTCCC
GAGCTAGCTGTCTCACGGCGCATGGTACAAATGTGGACGAACTTCGCCAA
AACTGGGAACCCAACGCCGAGTGTGGACTACGAATCTGTAGTTGACTTCA
CCTGGCCTCAAGTGAATAGCACGGAACATATCAGCTATTTGGACATCAAC
GGTAACTTCACCATACAGACGGACCCTGAAGCCAAGAGAGTAAAGTTCTG
GAACTTTCTATACGAGAACTATGCTGCCAAACCAGAGGACGCCACTAACG
CAACTGTAGTTGACCAGTGA
back to top
Synonyms
The feature 'SFRICE004973-RA' has the following synonyms
Synonym
SFRICE004973-PA
SFRICE004973
maker-SFRU_RICE_019257-augustus-gene-0.22-mRNA-1