AG6000547-RA (mRNA) Aphis glycines Ag_bt1

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameAG6000547-RA
Unique NameAG6000547-RA
TypemRNA
OrganismAphis glycines Ag_bt1 (aglycines_bt1)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SBAphidCtg1001contigSBAphidCtg1001:4418142..4418482 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly (v6.0) and Annotation OGS6.0 of Aphis glycines, Biotype 1 (Ag_bt1)2018-01-26
Properties
Property NameValue
AED0.48
QI0|0|0|1|0|0|3|0|71
eAED0.48
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
AG6000547AG6000547Aphis glycines Ag_bt1geneSBAphidCtg1001 4418142..4418482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
AG6000547-RAAG6000547-PAAphis glycines Ag_bt1polypeptideSBAphidCtg1001 4418142..4418482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
AG6000547-RA:cdsAG6000547-RA:cdsAphis glycines Ag_bt1CDSSBAphidCtg1001 4418414..4418482 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
AG6000547-RA:1AG6000547-RA:1Aphis glycines Ag_bt1exonSBAphidCtg1001 4418142..4418214 -
AG6000547-RA:2AG6000547-RA:2Aphis glycines Ag_bt1exonSBAphidCtg1001 4418266..4418339 -
AG6000547-RA:3AG6000547-RA:3Aphis glycines Ag_bt1exonSBAphidCtg1001 4418414..4418482 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>AG6000547-RA ID=AG6000547-RA|Name=AG6000547-RA|organism=Aphis glycines Ag_bt1|type=mRNA|length=216bp|location=Sequence derived from alignment at SBAphidCtg1001:4418142..4418482- (Aphis glycines Ag_bt1)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATTTACAGTGTACGTTTTTATACCATTGTTAAAACTTGTTTCTTA
TAGATTTAAGTATAGTAAAGCAATTGTTGACAATCCGAAATTGCATATCT
TGGATTTTAATGTTATTGTAATAATAAAAATTAACATCACACTGCAGCTT
TTACTTGTCTCGTATTATATGATTGTTTTAAAGGTAACGTCGTCGGAATA
TAACAATGTTTCATAA
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protein sequence of AG6000547-RA

>AG6000547-PA ID=AG6000547-PA|Name=AG6000547-RA|organism=Aphis glycines Ag_bt1|type=polypeptide|length=71bp
MQFTVYVFIPLLKLVSYRFKYSKAIVDNPKLHILDFNVIVIIKINITLQL
LLVSYYMIVLKVTSSEYNNVS
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mRNA from alignment at SBAphidCtg1001:4418142..4418482-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>AG6000547-RA ID=AG6000547-RA|Name=AG6000547-RA|organism=Aphis glycines Ag_bt1|type=mRNA|length=341bp|location=Sequence derived from alignment at SBAphidCtg1001:4418142..4418482- (Aphis glycines Ag_bt1)
ATGCAATTTACAGTGTACGTTTTTATACCATTGTTAAAACTTGTTTCTTA
TAGATTTAAGTATAGTAAAGTAAATACTTCACGTTTCTCATTACTCTTCA
CTTGTAATCATAAATTATACTTAACTGCTTATTAAATACTTAGGCAATTG
TTGACAATCCGAAATTGCATATCTTGGATTTTAATGTTATTGTAATAATA
AAAATTAACATCACACTGTAAACAAACCTTCATTAAAAACTTAAAAAGGA
CAACAAAATAATGTTTAGGCAGCTTTTACTTGTCTCGTATTATATGATTG
TTTTAAAGGTAACGTCGTCGGAATATAACAATGTTTCATAA
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Coding sequence (CDS) from alignment at SBAphidCtg1001:4418142..4418482-

>AG6000547-RA ID=AG6000547-RA|Name=AG6000547-RA|organism=Aphis glycines Ag_bt1|type=CDS|length=216bp|location=Sequence derived from alignment at SBAphidCtg1001:4418142..4418482- (Aphis glycines Ag_bt1)
ATGCAATTTACAGTGTACGTTTTTATACCATTGTTAAAACTTGTTTCTTA
TAGATTTAAGTATAGTAAAGCAATTGTTGACAATCCGAAATTGCATATCT
TGGATTTTAATGTTATTGTAATAATAAAAATTAACATCACACTGCAGCTT
TTACTTGTCTCGTATTATATGATTGTTTTAAAGGTAACGTCGTCGGAATA
TAACAATGTTTCATAA
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Synonyms
The feature 'AG6000547-RA' has the following synonyms
Synonym
maker-SBAphidCtg1001-snap-gene-44.127-mRNA-1