AG6000673-RA (mRNA) Aphis glycines Ag_bt1

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	AG6000673-RA
Unique Name	AG6000673-RA
Type	mRNA
Organism	Aphis glycines Ag_bt1 (aglycines_bt1)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
SBAphidCtg1001	contig	SBAphidCtg1001:4991532..4996117 - View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly (v6.0) and Annotation OGS6.0 of Aphis glycines, Biotype 1 (Ag_bt1)	2018-01-26

Properties


Property Name	Value
AED	0.45
QI	281\|1\|1\|1\|0.8\|0.66\|6\|40\|218
eAED	0.45
merge warning	1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
AG6000673	AG6000673	Aphis glycines Ag_bt1	gene	SBAphidCtg1001 4991532..4996117 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
AG6000673-RA	AG6000673-PA	Aphis glycines Ag_bt1	polypeptide	SBAphidCtg1001 4991572..4995570 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
AG6000673-RA:three_prime_utr	AG6000673-RA:three_prime_utr	Aphis glycines Ag_bt1	three_prime_UTR	SBAphidCtg1001 4991532..4991571 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
AG6000673-RA:cds	AG6000673-RA:cds	Aphis glycines Ag_bt1	CDS	SBAphidCtg1001 4995462..4995570 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
AG6000673-RA:five_prime_utr	AG6000673-RA:five_prime_utr	Aphis glycines Ag_bt1	five_prime_UTR	SBAphidCtg1001 4995852..4996117 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
AG6000673-RA:1	AG6000673-RA:1	Aphis glycines Ag_bt1	exon	SBAphidCtg1001 4995852..4996117 -
AG6000673-RA:2	AG6000673-RA:2	Aphis glycines Ag_bt1	exon	SBAphidCtg1001 4995462..4995585 -
AG6000673-RA:3	AG6000673-RA:3	Aphis glycines Ag_bt1	exon	SBAphidCtg1001 4995265..4995391 -
AG6000673-RA:4	AG6000673-RA:4	Aphis glycines Ag_bt1	exon	SBAphidCtg1001 4993554..4993677 -
AG6000673-RA:5	AG6000673-RA:5	Aphis glycines Ag_bt1	exon	SBAphidCtg1001 4992951..4993053 -
AG6000673-RA:6	AG6000673-RA:6	Aphis glycines Ag_bt1	exon	SBAphidCtg1001 4991532..4991765 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at SBAphidCtg1001:4991532..4996117-
coding sequence from alignment at SBAphidCtg1001:4991532..4996117-

spliced messenger RNA

>AG6000673-RA ID=AG6000673-RA|Name=AG6000673-RA|organism=Aphis glycines Ag_bt1|type=mRNA|length=978bp|location=Sequence derived from alignment at SBAphidCtg1001:4991532..4996117- (Aphis glycines Ag_bt1)|Notes=Excludes all bases but those of type(s): exon.  
ACCGAATCCATTCGCGCTAATCAGGAACGCACTTTTGCTGCTTCCGTAGA
AGCTCGAAAGTTCAAATCGTGTACACCGTTCTTCGTAGCTGACGGTGAAA
CGTAATTTTTTCCTTAATGTAATAATAAAACTTGTCCTAGTTCGTAGAAC
AAATGACATATTATTATATCGTGCACTGTACAGCGTCCTAACCGAATTAC
GCTCATTTAATTATAATAATAACACTAAAGTTCCAGTGACATAATTAAAT
TTGTCATCACCATAAGGTGGCGTTTAGGGGTATGGAAGAAAAGGCGATAC
TCGACATTTCAGACCTGCGTTGCACAGATACGGATCCCGGAGATACTACT
ACGGTACTAGACGGTCTTTTGGGAGCTGGACCGCACTACGATTACGGCGA
TGTGACCGGCTGCGACAGTCCTACGGATAGATGCGATGATAACGATCAAT
CATCTGGATCTTTGAGCACTGACCAAAATTCCAATAACAACGTCAAGAGG
AAACAGCGGAGATACAGAACAACATTCACAAATTTCCAACTGGAAGAATT
AGAAAACTCGTTTCAGAAAACACATTACCCTGACGTATTTTTTCGAGAAG
AATTGGCAATGCGTATCGACTTGACTGAAGCTAGGGTGCAGGTATGGTTT
CAGAATCGTAGAGCCAAATGGCGAAAGCAAGAAAAAACCTTGGTTTCCCA
GCATCAGAACCAAAACGAACCAATTATAAGCCCTTGCTTAACAGATAATC
CAATATTCGGAAACTCTTCTAGCCTTCTTCCTCAGCCAGACTGGAACAGT
CTATGCTCTTATAATTCATTTCAACCATCAGCGACATTCGATAAGGATCT
ACAAGCAATTGATATCGACAATGATTTACTTCGGTTCAAAACAAGAGAAC
TACATGAAAACGATATGCTCATGTCGCCACCTTCATAAACATTTATTAAT
CATTTGTTAAGTAAATTGTTAATTAAAT

protein sequence of AG6000673-RA

>AG6000673-PA ID=AG6000673-PA|Name=AG6000673-RA|organism=Aphis glycines Ag_bt1|type=polypeptide|length=218bp
MEEKAILDISDLRCTDTDPGDTTTVLDGLLGAGPHYDYGDVTGCDSPTDR
CDDNDQSSGSLSTDQNSNNNVKRKQRRYRTTFTNFQLEELENSFQKTHYP
DVFFREELAMRIDLTEARVQVWFQNRRAKWRKQEKTLVSQHQNQNEPIIS
PCLTDNPIFGNSSSLLPQPDWNSLCSYNSFQPSATFDKDLQAIDIDNDLL
RFKTRELHENDMLMSPPS

mRNA from alignment at SBAphidCtg1001:4991532..4996117-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>AG6000673-RA ID=AG6000673-RA|Name=AG6000673-RA|organism=Aphis glycines Ag_bt1|type=mRNA|length=4586bp|location=Sequence derived from alignment at SBAphidCtg1001:4991532..4996117- (Aphis glycines Ag_bt1)
ACCGAATCCATTCGCGCTAATCAGGAACGCACTTTTGCTGCTTCCGTAGA
AGCTCGAAAGTTCAAATCGTGTACACCGTTCTTCGTAGCTGACGGTGAAA
CGTAATTTTTTCCTTAATGTAATAATAAAACTTGTCCTAGTTCGTAGAAC
AAATGACATATTATTATATCGTGCACTGTACAGCGTCCTAACCGAATTAC
GCTCATTTAATTATAATAATAACACTAAAGTTCCAGTGACATAATTAAAT
TTGTCATCACCATAAGGTCAGTAGTATAATAATTCACAACCGATATATTC
AGGAGTGTACACACGAGAGGAATCGACCAAAGATTTTTATTTTTTAATAA
TAATTAATAGTTGGGTATAGGTATACTTACTACTTACTCAGTAATTTATA
AATAATTAATTTAATATGATGGTCCATTCACAGTAGGAAAATTGTGTGTA
CACGCAACTGGATGTATTTTACTTAAATGTGGCTATATAGTATAAATTAT
ATAAACGTAATAAATTCTGTATTAAACATGAGGTGGCGTTTAGGGGTATG
GAAGAAAAGGCGATACTCGACATTTCAGACCTGCGTTGCACAGATACGGA
TCCCGGAGATACTACTACGGTACTAGACGGTCTTTTGGGAGCTGGACCGC
ACTACGGTAAGTCGTCAGACAATCATCGTTTTACGTTATTAAATAAAGTA
ATAATTTACTCTGTCGTCGTGTACAGATTACGGCGATGTGACCGGCTGCG
ACAGTCCTACGGATAGATGCGATGATAACGATCAATCATCTGGATCTTTG
AGCACTGACCAAAATTCCAATAACAACGTCAAGAGGAAACAGCGGAGATA
CAGGTAACAATCGCAGTAGGTAGGTACACGAAGTATCTATGGAGTTTTTT
GTTTTTAGAAAGTTTACTGTATACCCAGGGATATAGAATTTCATGTAAAG
TATTTTTTATTAACGTAAATGTATAATATATACATAAATAAAAAAAGCTG
ATATAATTTTTAAAATACTGCAATATACCTACCTACTTAATAAAAGTACC
TTCGCCTATTTTAAAAGGACAGATTTTTACTGGAAATAGATAGGTAGTTG
AGGTTTGAGAATAATATATTTTATTTTTGTATTTCAATTTAAAATTTTTA
AGTACGAAAATTAAATTATTTATTGGGTTTTCATGATCATAAACAATAGT
CGCCGCTTATTGGACTCGTGGTTAATAGACTCGGTTATTGGACTCAAACA
GGCTAGGCTGGTACCGATTCACACGTAGGTATATACTTTTGCATTGAAAA
AATATTGTCTGTTGTACTCACTATACCAGTTAATGAACCATGGGATTCAT
GTATAATGTTAAGAACATATTAACACAATTCGTTAATTTTACCGATTTTA
TGGCTTGTATTTAGACATTTAGACAAAATACTCAGATTTATACTATTTCT
ATGACTTAACGCATTTAAAAGAATTAAAATTTAAAAATATTTTTAAACAT
AATTTTTAAATTATTATTTATATATAAAAAAAAAACATTTTCTAATTTTT
CCATTATCAATTTTCATATTTTTCTTTTCGTCATAAAAGAGAATATTATT
TGAAATACATGAATAAATATATAACATAATAAATATTTATTATTACACAA
TTTTAATTTTAATTTGTTTAGGTATTACAATGCATATTATGTTTATGTTT
TTTTTTTAATTCTTGAGCCTTTTGCTTAATTCGCACATTTGGTAAATGGA
CTCAAATTTCAATTAGTCTGGTCCCAAAATGAACCCAATAAGCGGCGACT
TCTGTACCCAACAGCTATCTATATAATATACCAATGGCTTAACTCTTAAC
GACTAATAAAACTAACTAATACCAATTACAAGCCACAATCGTGAAACTAT
TCTTTATGAACATCAAGTGAAATTATGTTGTTTATTAAAACCTAAATAGC
TTTTGTATTATAATATTAAATTAAAATGTAAAAATATAAATAAACATGCT
TATAATCAAAATCAAAAACAAAAGGAATTATACTTATAAAGCTTATTCTG
GAAAAAGAAAAAAGTAGACCCTATATACTCGTATATATATTAGTTGTACT
AAGCAATAAAACATCATTCATCACCCATTTATATAGACTAGTTTATTTAT
ATAGGTATTATGAAACGCACATTACTATGAAATCGTTCTTAAAAGTGTAA
TTCTATTTTAATTTTTAACAAATAATTATCTAATTAAAAATGATAATACT
AATACCTACTTATATTATCACTTTTAATATGAACAAAAATGATTTCTTAC
GTAAAGAAATTTTGTATATTGTATTATGCGTGCTAATTTTAATTTCAGCT
AACTGTTAGACACTAACACTATCCCGTTGGTCATGTAAACGACTCTTCAT
ATCAGGTGTACTTATATGAAATTTGGATTTCTGTTTTCAGAACAACATTC
ACAAATTTCCAACTGGAAGAATTAGAAAACTCGTTTCAGAAAACACATTA
CCCTGACGTATTTTTTCGAGAAGAATTGGCAATGCGTATCGACTTGACTG
AAGCTAGGGTGCAGGTATAGTATCAATATTGTTCATATTATACCAAATCC
GGATTAAGGACGACAAAGGGCGGAAGGTAAGGACACAATACTGAGGCTTA
TTTCTTTCAACAAAATATATTTTTAATACATTCATAAGAAAACTCTAAAG
ATAAAAAATAAAAACGTTTATATCATAAAAGTTTACAAAATTATAGATTC
ATAATAAATTGATATTTGATGATAATTTGTAAATTATTAAAAATGGAAAT
TATTCCTATTTATTAGAACACATATTGAATCACGTATGGTTCAATTATAA
TATATTGTACCTACCTATGTAGTTATTAAATCATTATAATTAATAAGTAA
TATTAGAAATAAGGAAGGATGAAGTTTTAAAGTTGAAAGGAGCCTAAAAA
TTCTGGGGCCCAATGGTTCTTTAATCCGGATTTCTTTATTACTGGTATTT
AGCATACCATCCACAGTCTGCAGTATAAAATGTATTAAACAAATGTTGTC
TAAACAATTTATAGGTATGGTTTCAGAATCGTAGAGCCAAATGGCGAAAG
CAAGAAAAAACCTTGGTTTCCCAGCATCAGAACCAAAACGAACCAATTAT
AAGCCCTTGCTTAACAGGTTAAAACTTAATTATTAAATTTTATAACTGTA
ATTTTTCTTACATAATAGATATACCTATTGACTTTATAATATTATTTACT
CGTATTGGTTTATACATAATATATAATAGGTACATGTAAACGGCGTTACT
GTGTAATATTAAGTATAGAACCAATATCATTTTTGCTATATTTCAAAAAA
TGATAGTTATGTAATCATTATAAAACTATTTATTTTTAAATTTTATAGTA
AACCTTTTTCTACGTAGGAATTTATTAATTTGAACTTCCTTATTTTCTCT
ATAGTGTCATTGACCGATTGGACTAAATCTAATTACATATTAATCAGTAT
ATTATACTAATGTAAATAATCGTATACACTATACACTTGACAGTTTATCC
TGATACGTACCTATTTTGATTTCGTAAGAATGTGCTAACAATCTAACGTA
TAAGACCGGTATAGGGGGGTTTACTTCCGCATTACTTGGAAAGTGATGTG
TTACCTACTTGGATGTGTTAAATTTTAATTCAATGATGAATTATTAATGA
TTGTACTCAAACGAAAAACGATTCTGATCTTCTGTGTGGAGTATATAATA
TTACAATATACAATATAATTGTTTCTTAAAATAAAGTTTGTTAGATACTG
CATTTATATGGGTAGATAGATTATTATTACTTATTAGTATTTGTTTGGTC
AATATTCTAGATTTAAAGCATTTTTGCTCAACCAATTCCAGCATATCGAA
TGTATCGTAAAATGGCGTAAATAGATTATGAATGTTATAATATCTTAGTT
TAAGATTAACATTAATTTAAGTTAAGATTAGGTTATATTTAGAGAAGGTA
CTTTGATAAGGCTCTAGTCGCTCTACCAATAGGAACTCTGGTTATACTTT
TTTGTTAAGTATATTGTTTTGTTGAAAACTAATTGTATATTGAATATCGC
TATTTTTTAATTATTTAAAAATACCTAGTGTAAATTTCCTACTAGATCAA
ATTTGTTATCATAAAAATATTAAAAACTATCTCTGTGTTAAATTATTGAA
GATTGAAGCACGTTTTTGCTCAAAACGTTATGACTAAATATAATATTTTA
TTTATCATTAAAGACATAGGTTATAGTTTTATATTTATTAGTGCTTTTAT
TATACTTAATATTAAGTAAACAATATATTTCAAAGCACTTTTTTTTTTTT
AGATAATCCAATATTCGGAAACTCTTCTAGCCTTCTTCCTCAGCCAGACT
GGAACAGTCTATGCTCTTATAATTCATTTCAACCATCAGCGACATTCGAT
AAGGATCTACAAGCAATTGATATCGACAATGATTTACTTCGGTTCAAAAC
AAGAGAACTACATGAAAACGATATGCTCATGTCGCCACCTTCATAAACAT
TTATTAATCATTTGTTAAGTAAATTGTTAATTAAAT

Coding sequence (CDS) from alignment at SBAphidCtg1001:4991532..4996117-

>AG6000673-RA ID=AG6000673-RA|Name=AG6000673-RA|organism=Aphis glycines Ag_bt1|type=CDS|length=657bp|location=Sequence derived from alignment at SBAphidCtg1001:4991532..4996117- (Aphis glycines Ag_bt1)
ATGGAAGAAAAGGCGATACTCGACATTTCAGACCTGCGTTGCACAGATAC
GGATCCCGGAGATACTACTACGGTACTAGACGGTCTTTTGGGAGCTGGAC
CGCACTACGATTACGGCGATGTGACCGGCTGCGACAGTCCTACGGATAGA
TGCGATGATAACGATCAATCATCTGGATCTTTGAGCACTGACCAAAATTC
CAATAACAACGTCAAGAGGAAACAGCGGAGATACAGAACAACATTCACAA
ATTTCCAACTGGAAGAATTAGAAAACTCGTTTCAGAAAACACATTACCCT
GACGTATTTTTTCGAGAAGAATTGGCAATGCGTATCGACTTGACTGAAGC
TAGGGTGCAGGTATGGTTTCAGAATCGTAGAGCCAAATGGCGAAAGCAAG
AAAAAACCTTGGTTTCCCAGCATCAGAACCAAAACGAACCAATTATAAGC
CCTTGCTTAACAGATAATCCAATATTCGGAAACTCTTCTAGCCTTCTTCC
TCAGCCAGACTGGAACAGTCTATGCTCTTATAATTCATTTCAACCATCAG
CGACATTCGATAAGGATCTACAAGCAATTGATATCGACAATGATTTACTT
CGGTTCAAAACAAGAGAACTACATGAAAACGATATGCTCATGTCGCCACC
TTCATAA

Synonyms

The feature 'AG6000673-RA' has the following synonyms


Synonym
augustus_masked-SBAphidCtg1001-processed-gene-50.205-mRNA-1