SFRICE005043-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
SFRU_RICE_005996	contig	SFRU_RICE_005996:40743..44545 + View in Apollo

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
SFRICE005043	SFRICE005043	Spodoptera frugiperda rice	gene	SFRU_RICE_005996 40743..44545 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE005043-RA	SFRICE005043-PA	Spodoptera frugiperda rice	polypeptide	SFRU_RICE_005996 40802..44424 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE005043-RA-exon	SFRICE005043-RA-exon-1	Spodoptera frugiperda rice	exon	SFRU_RICE_005996 40743..40850 +
SFRICE005043-RA-exon	SFRICE005043-RA-exon-2	Spodoptera frugiperda rice	exon	SFRU_RICE_005996 41654..41873 +
SFRICE005043-RA-exon	SFRICE005043-RA-exon-3	Spodoptera frugiperda rice	exon	SFRU_RICE_005996 42548..42684 +
SFRICE005043-RA-exon	SFRICE005043-RA-exon-4	Spodoptera frugiperda rice	exon	SFRU_RICE_005996 43052..43162 +
SFRICE005043-RA-exon	SFRICE005043-RA-exon-5	Spodoptera frugiperda rice	exon	SFRU_RICE_005996 44261..44545 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE005043-RA-five_prime_UTR	SFRICE005043-RA-five_prime_UTR-6	Spodoptera frugiperda rice	five_prime_UTR	SFRU_RICE_005996 40743..40801 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE005043-RA-CDS	SFRICE005043-RA-CDS-1	Spodoptera frugiperda rice	CDS	SFRU_RICE_005996 40802..40850 +
SFRICE005043-RA-CDS	SFRICE005043-RA-CDS-2	Spodoptera frugiperda rice	CDS	SFRU_RICE_005996 41654..41873 +
SFRICE005043-RA-CDS	SFRICE005043-RA-CDS-3	Spodoptera frugiperda rice	CDS	SFRU_RICE_005996 42548..42684 +
SFRICE005043-RA-CDS	SFRICE005043-RA-CDS-4	Spodoptera frugiperda rice	CDS	SFRU_RICE_005996 43052..43162 +
SFRICE005043-RA-CDS	SFRICE005043-RA-CDS-5	Spodoptera frugiperda rice	CDS	SFRU_RICE_005996 44261..44424 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE005043-RA-three_prime_UTR	SFRICE005043-RA-three_prime_UTR-12	Spodoptera frugiperda rice	three_prime_UTR	SFRU_RICE_005996 44425..44545 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at SFRU_RICE_005996:40743..44545+
coding sequence from alignment at SFRU_RICE_005996:40743..44545+

spliced messenger RNA

>SFRICE005043-RA ID=SFRICE005043-RA|Name=SFRICE005043-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=861bp|location=Sequence derived from alignment at SFRU_RICE_005996:40743..44545+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
CTCCAGAGTATTCCGTGGTTACCTCGCGGTGTGCTGGCACGTCTCACTGT
CTCATCAAGATGGCGAAGGAAATTGTTTTTTTGTTCCTGGCTATCGCCTT
TTCGGCAGTACAAGCAGAAATAATCTACCCGTGCCCTCGGCTATCACACC
AATGTATCAGCAAGGTGCTAGCTTCCAACTCCGGTTGTGACACAAACGTG
ATGGGCTTCATCGCCAACCAGTACAACGTCACCGAGTTCCACTTCGAGAC
GGCATACTTCAACTGCTCGTATATAGACAGGGGTCTCATCGTCAGGAATC
ACGACAAGTGTAGAATTTCGAGGTTTTTCTACAACACAGTAACGAAGGTC
GCGGTGCTGGGTATGACATGCCGGAACCTGGAGCTGGAGTCCGACCGAGT
GCTCATCCAGCACCGGACCTTCCAGGAAGACACGTCCTACAACTACCACA
TACACGCTACTTACCCTTTGATCCACATCACTGTGAACCTGCCCAAGAGC
ACCAACATGGACCTGTGCACCTCGCACGCGTTCACCGACGTCGTCACGCT
GCCCATCATGCACATCGATCCTAAAGACAGACCAACAGAAAAGTTTTTGA
CACGCGACCTGACGGCGCTGAATATATTCGAAAGAGAAGCGTTTTACTAC
ACAGGAGACCTCCTCGCCAAAGTATACATCGACGCCACCACTTGTTACTA
CAACTGCAAACAGCCACTACACCATTCCACCGCCGTTTGAAACTACATTT
GTAATCAAGTACCACATAGCACATCTTACTACAATATCGCACCCTTTGAA
TGAAAGTGACCGAATCCAAAAACTGCAAGTTTTTTAGATTAGTTTTTTGG
TTGTAGAGTAT

protein sequence of SFRICE005043-RA

>SFRICE005043-PA ID=SFRICE005043-PA|Name=SFRICE005043-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=227bp
MAKEIVFLFLAIAFSAVQAEIIYPCPRLSHQCISKVLASNSGCDTNVMGF
IANQYNVTEFHFETAYFNCSYIDRGLIVRNHDKCRISRFFYNTVTKVAVL
GMTCRNLELESDRVLIQHRTFQEDTSYNYHIHATYPLIHITVNLPKSTNM
DLCTSHAFTDVVTLPIMHIDPKDRPTEKFLTRDLTALNIFEREAFYYTGD
LLAKVYIDATTCYYNCKQPLHHSTAV.

mRNA from alignment at SFRU_RICE_005996:40743..44545+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>SFRICE005043-RA ID=SFRICE005043-RA|Name=SFRICE005043-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=3803bp|location=Sequence derived from alignment at SFRU_RICE_005996:40743..44545+ (Spodoptera frugiperda rice)
CTCCAGAGTATTCCGTGGTTACCTCGCGGTGTGCTGGCACGTCTCACTGT
CTCATCAAGATGGCGAAGGAAATTGTTTTTTTGTTCCTGGCTATCGCCTT
TTCGGCAGGTAATGCAGATTTTATTTATTAAAGTCAAAGTCAAAGCATTT
AGTTCAATTAACCCTAAATTAGGCACTTGAAATATCAAATTGCCTTCTGC
CAGCTTCGCCCTCGTTCCTGTGGGTTAAAAAGTGGCTTATGTTATTCCAG
AGCATAATCTACCACTGTTCTTTTTTATGGTATAATCCGGTAAACGAGCA
GACTGATCACCTGATGGTAAGCAATCGCCGCCGCCCATTGACATCACACA
CAATTATTTGTTTCTTCTTATGGGACAAGGTACCTAAATATACAGACGGA
TCGCCTGATAGTAAGCATTTGGCAATTAATACCACCCATGGATACCCACA
ACACCAGAGGCAGAGGAGATAATTCCCGGAGCTGCGGATTACCTAGCGAG
TTAATAAGGCTCCGGCTCGAAGGGCAGGAGAATTAACAGGGTGGTTTTTA
GTCAGTAAGAGTCTGACACTCCCTTTCGCCTCGCCCAAGGCGGGAGAAGA
TATTGGATGATTTTGCCTCTTCAAAAAAAAGAGTAAAAAATAATTAATCA
AGTTATGAAAATCTAGCAAATCCGGCGAACTCCGTTTCGCTACCAAAGTT
TTTTCCCTGTTTCCCTGTTTTTCTCTTGAATTTTTCGTGAATTTTCTTTG
CTATAAACCTCACGGAACCCGAGACCTTTCCAATGAATGAAAATCGAATC
AAAACCGTGGAAATCGCTTCGTGCATTCTGGAGTTATAGCGTCAGGAAGG
AAAACCCGACTTATTTTTATATTATAGATAACTTTCTAAACTAATAATCC
ATCCACTACAGTACAAGCAGAAATAATCTACCCGTGCCCTCGGCTATCAC
ACCAATGTATCAGCAAGGTGCTAGCTTCCAACTCCGGTTGTGACACAAAC
GTGATGGGCTTCATCGCCAACCAGTACAACGTCACCGAGTTCCACTTCGA
GACGGCATACTTCAACTGCTCGTATATAGACAGGGGTCTCATCGTCAGGA
ATCACGACAAGTGTAGAATTTCGAGGTTTTTGTAAGTTTATTTTCATGTT
TTAATCATTTTTTGAAACGTTGCCCCACACTAGGATTTTCTCTTGTGTCG
TGGGTGCGTTTCCAAACATACAAGTTCACATACACATGACATCCAGACCC
GAAACATCAATTTGTGGATCTCACAAAGAGTTGTTCTACACATTGCACGG
CAGCCAGTTGCCCAGCCACCGCGCCAACCGTGCAGTTATTTTATTCTTAA
ATTTGTTTAACCATACTGCCATTATGACCATCTATATAAATAACTTTTAT
TTAGATTAGGTATTTCGGATCTCCAAATATCTTTTTTTATGGAATAGGCT
GAAAACGAGCAGACGGGTCACCTGGTGGTAAGCGACCACTAGAGATCGTT
ACACTAGAGGAGTCAAAGGTGCGTTACCGGCCTTGCCGTACGTGGTATCT
TGTATAGAAAGAGAGAGGGGTATAGAGAGGGCAGTTAAATAAGGATAGGT
AACTTTTGAGGAGTTCTACTTAGTCACAGAAACTGCGTAGGTATAGGCTT
GGGAGTTGAAGTCCTCGGTTCGATCAAACGATTACCGAATGTAATACCGT
AGTAACCAATTAATTTCATATTGCGTCAAAGTCGATTAATAAGTGACTTA
TAACTTACATGAAAGCTGTATGAACTCGTCCGTAAATCTTGCGACATATT
TCCAGCTACAACACAGTAACGAAGGTCGCGGTGCTGGGTATGACATGCCG
GAACCTGGAGCTGGAGTCCGACCGAGTGCTCATCCAGCACCGGACCTTCC
AGGAAGACACGTCCTACAACTACCACATACACGCTACTTACCGTGAGTAT
AATATGTTTACAGGGAGGCCGACCGAGAATAAGTGGGTATCGGTGGCGTA
GCATACCTTGACAGAGGCCCAGTATAATTTTTTTTTTGTTTATAGGGCCC
CCTTTTTTCTTTTTGTTTGAAGGGGGAAAAGCATTCAATGACTTTTCCCG
CCTCACCGAGGGGGTTTACCGATGCTATAACAACGAGCCCAAGTTTCTTC
TACTACAAGAAAGGGGAAGGGTCTTCATTGGACCTCCTACTGTCAAAAAT
GCTTTTGAAAACATAAAAATAATGCATTATCACCAAATTTTATGCGTCAT
CGTAATTGAATCCGAGGTCTAGAACTAACCTTAGCTTTAATTTGTTCCTC
TGCCCGCAGCTTTGATCCACATCACTGTGAACCTGCCCAAGAGCACCAAC
ATGGACCTGTGCACCTCGCACGCGTTCACCGACGTCGTCACGCTGCCCAT
CATGCACATCGATCCTAAAGGTATACCTGCGTCACATCAGCATCATCAGG
AATAGTTCCACTGCTGTCTTCTAAGAGGGGGTTTATCAAAATTCTGACGG
AGAAATTCGCTGACAAATACTTGCACATTACCTCTCTTCATCATCATCAT
CATCAGCCTGTTCTCGTCCACTGCTGGACATAGGCCTCTCCAATGGCACG
CCACTGAGCTTGATCTTTAGCTCTACGCATCCAACCACTACCACCTTGCG
GATATCGTCACTCCACCTAGCTGAAGGGCCCTACACTACGCTTGCCTTGA
CGCGGTCTCCATTCTAGAACACGTTTATCCCAACGGTCATTGGTTCTTTG
ACAAATGTGACCGGCCCACTGCCACTTCAGCTTACTTATCCTCCGTTCCG
GATTTGATCATTTCAAAGAGACTCCGATATTACGTCTAACAATTTCAAAA
TTAAACAATGAATTAGGAAATACCATCCAAACGAAATATACCACTCATTC
CTTTGTCAAACATTACCGCAAAATGGCCCTTCCAACTCTGTTGATATCGA
TCATTGATTCATTTAAATATATCATTAGTATTTTGCATGAAGCGACTGTC
ATCAAATACATACATCCATACCACATAACAACGTTCATAATTTTTATAAT
TAACTATTGTGAGACATACCAAATTAACTAAAAAAACAAGTTTAATGGAG
AAAAGCTCTACTAGTTTCGAGAGTGAATACGCTGCGCGACGTCACCGCAT
AGTCTGCGCACGCTGCTCATGATGAAGAGTCCCTCTGTGACTCGGAACTA
CTAGAGCTTTTCTCCATTAAACGTGATTTTTTAGTTAACATTCATAATTT
TATTATAATTTTCGTGAGATATACTAAATTAATTATTATATTATCGGCTT
ACTCACGTAATGTTTGACGAGGAACTCGACTAGTTTCAAGCCATGCTAGA
GGCTCATATTCATAAGCAGCATTCCGCGATACACGACGCGGCGATTGTCG
CGTAAACTAGTCGAGTTCCTTGTCTAACAGTTACATGAGAAAGCCGATAA
CATAATAATGAATTAAAATTCATAAATTCACACATATGAAACAAACTAAA
CACCACATTTATTTACAGACAGACCAACAGAAAAGTTTTTGACACGCGAC
CTGACGGCGCTGAATATATTCGAAAGAGAAGCGTTTTACTACACAGGAGA
CCTCCTCGCCAAAGTATACATCGACGCCACCACTTGTTACTACAACTGCA
AACAGCCACTACACCATTCCACCGCCGTTTGAAACTACATTTGTAATCAA
GTACCACATAGCACATCTTACTACAATATCGCACCCTTTGAATGAAAGTG
ACCGAATCCAAAAACTGCAAGTTTTTTAGATTAGTTTTTTGGTTGTAGAG
TAT

Coding sequence (CDS) from alignment at SFRU_RICE_005996:40743..44545+

>SFRICE005043-RA ID=SFRICE005043-RA|Name=SFRICE005043-RA|organism=Spodoptera frugiperda rice|type=CDS|length=681bp|location=Sequence derived from alignment at SFRU_RICE_005996:40743..44545+ (Spodoptera frugiperda rice)
ATGGCGAAGGAAATTGTTTTTTTGTTCCTGGCTATCGCCTTTTCGGCAGT
ACAAGCAGAAATAATCTACCCGTGCCCTCGGCTATCACACCAATGTATCA
GCAAGGTGCTAGCTTCCAACTCCGGTTGTGACACAAACGTGATGGGCTTC
ATCGCCAACCAGTACAACGTCACCGAGTTCCACTTCGAGACGGCATACTT
CAACTGCTCGTATATAGACAGGGGTCTCATCGTCAGGAATCACGACAAGT
GTAGAATTTCGAGGTTTTTCTACAACACAGTAACGAAGGTCGCGGTGCTG
GGTATGACATGCCGGAACCTGGAGCTGGAGTCCGACCGAGTGCTCATCCA
GCACCGGACCTTCCAGGAAGACACGTCCTACAACTACCACATACACGCTA
CTTACCCTTTGATCCACATCACTGTGAACCTGCCCAAGAGCACCAACATG
GACCTGTGCACCTCGCACGCGTTCACCGACGTCGTCACGCTGCCCATCAT
GCACATCGATCCTAAAGACAGACCAACAGAAAAGTTTTTGACACGCGACC
TGACGGCGCTGAATATATTCGAAAGAGAAGCGTTTTACTACACAGGAGAC
CTCCTCGCCAAAGTATACATCGACGCCACCACTTGTTACTACAACTGCAA
ACAGCCACTACACCATTCCACCGCCGTTTGA