Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Full name | SFRICE005043 |
| eAED | 0.46 |
| QI | 59|1|1|1|1|1|5|121|226 |
| AED | 0.46 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| SFRICE005043-RA-five_prime_UTR | SFRICE005043-RA-five_prime_UTR-6 | Spodoptera frugiperda rice | five_prime_UTR | SFRU_RICE_005996 40743..40801 + |
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| SFRICE005043-RA-three_prime_UTR | SFRICE005043-RA-three_prime_UTR-12 | Spodoptera frugiperda rice | three_prime_UTR | SFRU_RICE_005996 44425..44545 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >SFRICE005043-RA ID=SFRICE005043-RA|Name=SFRICE005043-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=861bp|location=Sequence derived from alignment at SFRU_RICE_005996:40743..44545+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.
CTCCAGAGTATTCCGTGGTTACCTCGCGGTGTGCTGGCACGTCTCACTGT
CTCATCAAGATGGCGAAGGAAATTGTTTTTTTGTTCCTGGCTATCGCCTT
TTCGGCAGTACAAGCAGAAATAATCTACCCGTGCCCTCGGCTATCACACC
AATGTATCAGCAAGGTGCTAGCTTCCAACTCCGGTTGTGACACAAACGTG
ATGGGCTTCATCGCCAACCAGTACAACGTCACCGAGTTCCACTTCGAGAC
GGCATACTTCAACTGCTCGTATATAGACAGGGGTCTCATCGTCAGGAATC
ACGACAAGTGTAGAATTTCGAGGTTTTTCTACAACACAGTAACGAAGGTC
GCGGTGCTGGGTATGACATGCCGGAACCTGGAGCTGGAGTCCGACCGAGT
GCTCATCCAGCACCGGACCTTCCAGGAAGACACGTCCTACAACTACCACA
TACACGCTACTTACCCTTTGATCCACATCACTGTGAACCTGCCCAAGAGC
ACCAACATGGACCTGTGCACCTCGCACGCGTTCACCGACGTCGTCACGCT
GCCCATCATGCACATCGATCCTAAAGACAGACCAACAGAAAAGTTTTTGA
CACGCGACCTGACGGCGCTGAATATATTCGAAAGAGAAGCGTTTTACTAC
ACAGGAGACCTCCTCGCCAAAGTATACATCGACGCCACCACTTGTTACTA
CAACTGCAAACAGCCACTACACCATTCCACCGCCGTTTGAAACTACATTT
GTAATCAAGTACCACATAGCACATCTTACTACAATATCGCACCCTTTGAA
TGAAAGTGACCGAATCCAAAAACTGCAAGTTTTTTAGATTAGTTTTTTGG
TTGTAGAGTAT back to topprotein sequence of SFRICE005043-RA >SFRICE005043-PA ID=SFRICE005043-PA|Name=SFRICE005043-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=227bp
MAKEIVFLFLAIAFSAVQAEIIYPCPRLSHQCISKVLASNSGCDTNVMGF
IANQYNVTEFHFETAYFNCSYIDRGLIVRNHDKCRISRFFYNTVTKVAVL
GMTCRNLELESDRVLIQHRTFQEDTSYNYHIHATYPLIHITVNLPKSTNM
DLCTSHAFTDVVTLPIMHIDPKDRPTEKFLTRDLTALNIFEREAFYYTGD
LLAKVYIDATTCYYNCKQPLHHSTAV. back to topmRNA from alignment at SFRU_RICE_005996:40743..44545+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >SFRICE005043-RA ID=SFRICE005043-RA|Name=SFRICE005043-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=3803bp|location=Sequence derived from alignment at SFRU_RICE_005996:40743..44545+ (Spodoptera frugiperda rice)
CTCCAGAGTATTCCGTGGTTACCTCGCGGTGTGCTGGCACGTCTCACTGT
CTCATCAAGATGGCGAAGGAAATTGTTTTTTTGTTCCTGGCTATCGCCTT
TTCGGCAGGTAATGCAGATTTTATTTATTAAAGTCAAAGTCAAAGCATTT
AGTTCAATTAACCCTAAATTAGGCACTTGAAATATCAAATTGCCTTCTGC
CAGCTTCGCCCTCGTTCCTGTGGGTTAAAAAGTGGCTTATGTTATTCCAG
AGCATAATCTACCACTGTTCTTTTTTATGGTATAATCCGGTAAACGAGCA
GACTGATCACCTGATGGTAAGCAATCGCCGCCGCCCATTGACATCACACA
CAATTATTTGTTTCTTCTTATGGGACAAGGTACCTAAATATACAGACGGA
TCGCCTGATAGTAAGCATTTGGCAATTAATACCACCCATGGATACCCACA
ACACCAGAGGCAGAGGAGATAATTCCCGGAGCTGCGGATTACCTAGCGAG
TTAATAAGGCTCCGGCTCGAAGGGCAGGAGAATTAACAGGGTGGTTTTTA
GTCAGTAAGAGTCTGACACTCCCTTTCGCCTCGCCCAAGGCGGGAGAAGA
TATTGGATGATTTTGCCTCTTCAAAAAAAAGAGTAAAAAATAATTAATCA
AGTTATGAAAATCTAGCAAATCCGGCGAACTCCGTTTCGCTACCAAAGTT
TTTTCCCTGTTTCCCTGTTTTTCTCTTGAATTTTTCGTGAATTTTCTTTG
CTATAAACCTCACGGAACCCGAGACCTTTCCAATGAATGAAAATCGAATC
AAAACCGTGGAAATCGCTTCGTGCATTCTGGAGTTATAGCGTCAGGAAGG
AAAACCCGACTTATTTTTATATTATAGATAACTTTCTAAACTAATAATCC
ATCCACTACAGTACAAGCAGAAATAATCTACCCGTGCCCTCGGCTATCAC
ACCAATGTATCAGCAAGGTGCTAGCTTCCAACTCCGGTTGTGACACAAAC
GTGATGGGCTTCATCGCCAACCAGTACAACGTCACCGAGTTCCACTTCGA
GACGGCATACTTCAACTGCTCGTATATAGACAGGGGTCTCATCGTCAGGA
ATCACGACAAGTGTAGAATTTCGAGGTTTTTGTAAGTTTATTTTCATGTT
TTAATCATTTTTTGAAACGTTGCCCCACACTAGGATTTTCTCTTGTGTCG
TGGGTGCGTTTCCAAACATACAAGTTCACATACACATGACATCCAGACCC
GAAACATCAATTTGTGGATCTCACAAAGAGTTGTTCTACACATTGCACGG
CAGCCAGTTGCCCAGCCACCGCGCCAACCGTGCAGTTATTTTATTCTTAA
ATTTGTTTAACCATACTGCCATTATGACCATCTATATAAATAACTTTTAT
TTAGATTAGGTATTTCGGATCTCCAAATATCTTTTTTTATGGAATAGGCT
GAAAACGAGCAGACGGGTCACCTGGTGGTAAGCGACCACTAGAGATCGTT
ACACTAGAGGAGTCAAAGGTGCGTTACCGGCCTTGCCGTACGTGGTATCT
TGTATAGAAAGAGAGAGGGGTATAGAGAGGGCAGTTAAATAAGGATAGGT
AACTTTTGAGGAGTTCTACTTAGTCACAGAAACTGCGTAGGTATAGGCTT
GGGAGTTGAAGTCCTCGGTTCGATCAAACGATTACCGAATGTAATACCGT
AGTAACCAATTAATTTCATATTGCGTCAAAGTCGATTAATAAGTGACTTA
TAACTTACATGAAAGCTGTATGAACTCGTCCGTAAATCTTGCGACATATT
TCCAGCTACAACACAGTAACGAAGGTCGCGGTGCTGGGTATGACATGCCG
GAACCTGGAGCTGGAGTCCGACCGAGTGCTCATCCAGCACCGGACCTTCC
AGGAAGACACGTCCTACAACTACCACATACACGCTACTTACCGTGAGTAT
AATATGTTTACAGGGAGGCCGACCGAGAATAAGTGGGTATCGGTGGCGTA
GCATACCTTGACAGAGGCCCAGTATAATTTTTTTTTTGTTTATAGGGCCC
CCTTTTTTCTTTTTGTTTGAAGGGGGAAAAGCATTCAATGACTTTTCCCG
CCTCACCGAGGGGGTTTACCGATGCTATAACAACGAGCCCAAGTTTCTTC
TACTACAAGAAAGGGGAAGGGTCTTCATTGGACCTCCTACTGTCAAAAAT
GCTTTTGAAAACATAAAAATAATGCATTATCACCAAATTTTATGCGTCAT
CGTAATTGAATCCGAGGTCTAGAACTAACCTTAGCTTTAATTTGTTCCTC
TGCCCGCAGCTTTGATCCACATCACTGTGAACCTGCCCAAGAGCACCAAC
ATGGACCTGTGCACCTCGCACGCGTTCACCGACGTCGTCACGCTGCCCAT
CATGCACATCGATCCTAAAGGTATACCTGCGTCACATCAGCATCATCAGG
AATAGTTCCACTGCTGTCTTCTAAGAGGGGGTTTATCAAAATTCTGACGG
AGAAATTCGCTGACAAATACTTGCACATTACCTCTCTTCATCATCATCAT
CATCAGCCTGTTCTCGTCCACTGCTGGACATAGGCCTCTCCAATGGCACG
CCACTGAGCTTGATCTTTAGCTCTACGCATCCAACCACTACCACCTTGCG
GATATCGTCACTCCACCTAGCTGAAGGGCCCTACACTACGCTTGCCTTGA
CGCGGTCTCCATTCTAGAACACGTTTATCCCAACGGTCATTGGTTCTTTG
ACAAATGTGACCGGCCCACTGCCACTTCAGCTTACTTATCCTCCGTTCCG
GATTTGATCATTTCAAAGAGACTCCGATATTACGTCTAACAATTTCAAAA
TTAAACAATGAATTAGGAAATACCATCCAAACGAAATATACCACTCATTC
CTTTGTCAAACATTACCGCAAAATGGCCCTTCCAACTCTGTTGATATCGA
TCATTGATTCATTTAAATATATCATTAGTATTTTGCATGAAGCGACTGTC
ATCAAATACATACATCCATACCACATAACAACGTTCATAATTTTTATAAT
TAACTATTGTGAGACATACCAAATTAACTAAAAAAACAAGTTTAATGGAG
AAAAGCTCTACTAGTTTCGAGAGTGAATACGCTGCGCGACGTCACCGCAT
AGTCTGCGCACGCTGCTCATGATGAAGAGTCCCTCTGTGACTCGGAACTA
CTAGAGCTTTTCTCCATTAAACGTGATTTTTTAGTTAACATTCATAATTT
TATTATAATTTTCGTGAGATATACTAAATTAATTATTATATTATCGGCTT
ACTCACGTAATGTTTGACGAGGAACTCGACTAGTTTCAAGCCATGCTAGA
GGCTCATATTCATAAGCAGCATTCCGCGATACACGACGCGGCGATTGTCG
CGTAAACTAGTCGAGTTCCTTGTCTAACAGTTACATGAGAAAGCCGATAA
CATAATAATGAATTAAAATTCATAAATTCACACATATGAAACAAACTAAA
CACCACATTTATTTACAGACAGACCAACAGAAAAGTTTTTGACACGCGAC
CTGACGGCGCTGAATATATTCGAAAGAGAAGCGTTTTACTACACAGGAGA
CCTCCTCGCCAAAGTATACATCGACGCCACCACTTGTTACTACAACTGCA
AACAGCCACTACACCATTCCACCGCCGTTTGAAACTACATTTGTAATCAA
GTACCACATAGCACATCTTACTACAATATCGCACCCTTTGAATGAAAGTG
ACCGAATCCAAAAACTGCAAGTTTTTTAGATTAGTTTTTTGGTTGTAGAG
TAT back to topCoding sequence (CDS) from alignment at SFRU_RICE_005996:40743..44545+ >SFRICE005043-RA ID=SFRICE005043-RA|Name=SFRICE005043-RA|organism=Spodoptera frugiperda rice|type=CDS|length=681bp|location=Sequence derived from alignment at SFRU_RICE_005996:40743..44545+ (Spodoptera frugiperda rice)
ATGGCGAAGGAAATTGTTTTTTTGTTCCTGGCTATCGCCTTTTCGGCAGT
ACAAGCAGAAATAATCTACCCGTGCCCTCGGCTATCACACCAATGTATCA
GCAAGGTGCTAGCTTCCAACTCCGGTTGTGACACAAACGTGATGGGCTTC
ATCGCCAACCAGTACAACGTCACCGAGTTCCACTTCGAGACGGCATACTT
CAACTGCTCGTATATAGACAGGGGTCTCATCGTCAGGAATCACGACAAGT
GTAGAATTTCGAGGTTTTTCTACAACACAGTAACGAAGGTCGCGGTGCTG
GGTATGACATGCCGGAACCTGGAGCTGGAGTCCGACCGAGTGCTCATCCA
GCACCGGACCTTCCAGGAAGACACGTCCTACAACTACCACATACACGCTA
CTTACCCTTTGATCCACATCACTGTGAACCTGCCCAAGAGCACCAACATG
GACCTGTGCACCTCGCACGCGTTCACCGACGTCGTCACGCTGCCCATCAT
GCACATCGATCCTAAAGACAGACCAACAGAAAAGTTTTTGACACGCGACC
TGACGGCGCTGAATATATTCGAAAGAGAAGCGTTTTACTACACAGGAGAC
CTCCTCGCCAAAGTATACATCGACGCCACCACTTGTTACTACAACTGCAA
ACAGCCACTACACCATTCCACCGCCGTTTGA back to top
Synonyms
The feature 'SFRICE005043-RA' has the following synonyms
| Synonym |
|---|
| SFRICE005043-PA |
| SFRICE005043 |
| maker-SFRU_RICE_005996-augustus-gene-0.17-mRNA-1 |
|