SFRICE034480-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Full name	SFRICE034480
eAED	0.07
QI	55\|1\|0.8\|1\|1\|1\|5\|0\|448
AED	0.07

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
SFRICE034480	SFRICE034480	Spodoptera frugiperda rice	gene	SFRU_RICE_012467 265..2290 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE034480-RA	SFRICE034480-PA	Spodoptera frugiperda rice	polypeptide	SFRU_RICE_012467 320..2290 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE034480-RA-exon	SFRICE034480-RA-exon-1	Spodoptera frugiperda rice	exon	SFRU_RICE_012467 265..365 +
SFRICE034480-RA-exon	SFRICE034480-RA-exon-2	Spodoptera frugiperda rice	exon	SFRU_RICE_012467 655..815 +
SFRICE034480-RA-exon	SFRICE034480-RA-exon-3	Spodoptera frugiperda rice	exon	SFRU_RICE_012467 901..1253 +
SFRICE034480-RA-exon	SFRICE034480-RA-exon-4	Spodoptera frugiperda rice	exon	SFRU_RICE_012467 1408..1620 +
SFRICE034480-RA-exon	SFRICE034480-RA-exon-5	Spodoptera frugiperda rice	exon	SFRU_RICE_012467 1720..2290 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE034480-RA-five_prime_UTR	SFRICE034480-RA-five_prime_UTR-6	Spodoptera frugiperda rice	five_prime_UTR	SFRU_RICE_012467 265..319 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE034480-RA-CDS	SFRICE034480-RA-CDS-1	Spodoptera frugiperda rice	CDS	SFRU_RICE_012467 320..365 +
SFRICE034480-RA-CDS	SFRICE034480-RA-CDS-2	Spodoptera frugiperda rice	CDS	SFRU_RICE_012467 655..815 +
SFRICE034480-RA-CDS	SFRICE034480-RA-CDS-3	Spodoptera frugiperda rice	CDS	SFRU_RICE_012467 901..1253 +
SFRICE034480-RA-CDS	SFRICE034480-RA-CDS-4	Spodoptera frugiperda rice	CDS	SFRU_RICE_012467 1408..1620 +
SFRICE034480-RA-CDS	SFRICE034480-RA-CDS-5	Spodoptera frugiperda rice	CDS	SFRU_RICE_012467 1720..2290 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at SFRU_RICE_012467:265..2290+
coding sequence from alignment at SFRU_RICE_012467:265..2290+

spliced messenger RNA

>SFRICE034480-RA ID=SFRICE034480-RA|Name=SFRICE034480-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1399bp|location=Sequence derived from alignment at SFRU_RICE_012467:265..2290+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
TATATGCAGCCCGTAAGTGCTGAGCGGTAAACTGGCAGAGGTAATTGAAC
ACATCATGCTTTGGCGCTGCAGTGTGCTGGTGATCGCCGTCTGCTTCTCG
TTTGACATCGTCTCCTCTCATAAGTTGAGATGTAATGTGCGCATGCGTAT
TGAATCTGGATGGGTCTGCGGCCTGCGCAGACGAGGAGAATACAACACCG
AGTACGCCAGCTTCAGGGGCATTCCGTATGGCCGGCAACCACTGGGGGAG
CTGCGGTTTAAGGAGCTCCAGCCAGTGAAGCCGTGGCGTCATTATTTAGA
TGCCACAGAAGAAGGACCCATATGTCCTCAGTATGGCATCGACGAGCTGT
ACGGACGTATGGTCGCCCCCACAAAGGGTATGAGTGAATCGTGCATCTAC
GCCAACGTCCATGTACCCTTGGAAGCTCTTTCAGTCGTGAGAAGTACTGA
CGAGTACGAATACAAGGACTGGGACAGACATGGGCACAAAAAGGGCATTC
CTATTTTAGTTTTCATTCATGGCGGAGGCTTTCAAGTAGGGTCAGGAGAC
ACTGACCTTCACGGACCAGAGTACCTCGTCAGCAAGGGGATAATAGTGAT
CACTTTCAATTATAGGATCAACGTGTTTGGTTTTCTTTCGCTGAATACTT
CCAAAATACCTGGTAATGCGGGTCTCAGAGACCAGGTGACGCTGCTGCGT
TGGGTTCAGCGAAATGCGAGAGCTTTTGGTGGAGACCCGAATGATGTAAC
GCTAGCGGGGCAGAGCGCTGGGGCAGCCTGCGCCCATTTACTGTCTCTGT
CAAACGCCACTAAGGGACTTTTTAAGAGGGTTATAATAATGAGTGGTACT
GCCGTACCGTCGTTTTACGCAGCTTCACCGATTTACGCAAAACAGGCTGC
TACCAGATTTTTAACGCTCTTGGGGATCAACTCCACTGATCCGGACCTCA
TCCATGACCAACTTGTTAAAACTCCACTCAAAGACATTTTAAGAGCTAAC
TCCGAGTACCAAATTGAAAGCGGGCTAGTCTCCTTTGTACCAGTGAGGGA
AGACAAACAATTAGAAATTGAGAGAATTGTAGACGATGATCCAATCACAC
TCATGGAGCAAGGTCGAGGGAAAGAATATCCAATGATCGTTGGTTTCACT
GACAACGAGTGCGAATTTTTCAGGAGAAGACTGTTTGACATTGATATTTT
GGGTCGGATAAAAGCTAACCCACTCGTGATTTTAAGACCTGAGATTCCAT
TTACAACGCTTCCTAATGTGGCACTCTCATTGGCCAATAAAGTGATTGAC
CGGTACTTCCACGGAAATCTAAATATAGTTGACTATTTAGAAGTATGCAG
AGACACATTGTTTATGTATCCAGCGTTTAAAATAGTTCAGTGGAGAGCT

protein sequence of SFRICE034480-RA

>SFRICE034480-PA ID=SFRICE034480-PA|Name=SFRICE034480-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=448bp
MLWRCSVLVIAVCFSFDIVSSHKLRCNVRMRIESGWVCGLRRRGEYNTEY
ASFRGIPYGRQPLGELRFKELQPVKPWRHYLDATEEGPICPQYGIDELYG
RMVAPTKGMSESCIYANVHVPLEALSVVRSTDEYEYKDWDRHGHKKGIPI
LVFIHGGGFQVGSGDTDLHGPEYLVSKGIIVITFNYRINVFGFLSLNTSK
IPGNAGLRDQVTLLRWVQRNARAFGGDPNDVTLAGQSAGAACAHLLSLSN
ATKGLFKRVIIMSGTAVPSFYAASPIYAKQAATRFLTLLGINSTDPDLIH
DQLVKTPLKDILRANSEYQIESGLVSFVPVREDKQLEIERIVDDDPITLM
EQGRGKEYPMIVGFTDNECEFFRRRLFDIDILGRIKANPLVILRPEIPFT
TLPNVALSLANKVIDRYFHGNLNIVDYLEVCRDTLFMYPAFKIVQWRA

mRNA from alignment at SFRU_RICE_012467:265..2290+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>SFRICE034480-RA ID=SFRICE034480-RA|Name=SFRICE034480-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2026bp|location=Sequence derived from alignment at SFRU_RICE_012467:265..2290+ (Spodoptera frugiperda rice)
TATATGCAGCCCGTAAGTGCTGAGCGGTAAACTGGCAGAGGTAATTGAAC
ACATCATGCTTTGGCGCTGCAGTGTGCTGGTGATCGCCGTCTGCTTCTCG
TGTAAGTTAATTATTATACAAACACTCATCCGTGGGAGGTATTTCACATT
GGACACCCGTTTTAATAGCACCCAAGCTAATAGCACCGGAGATGTTCCAC
TTACGGCACCCATGGGTATTTTTTGGGGGTGCCCAATGTGGAATACCTCA
TCCGTAGTCTTGGAAATTAAATACCAATAAAGCTACGGAGTGATCTGTTA
CTCAATGTCCTACAGTATTATACCGACATTTTATTTTTAAAATCATACGG
TAAAGTAAGCGTAAAGCTTTTTTTCTTGTCACATTTCCAGTTGACATCGT
CTCCTCTCATAAGTTGAGATGTAATGTGCGCATGCGTATTGAATCTGGAT
GGGTCTGCGGCCTGCGCAGACGAGGAGAATACAACACCGAGTACGCCAGC
TTCAGGGGCATTCCGTATGGCCGGCAACCACTGGGGGAGCTGCGGTTTAA
GGTGGGCCCGTCACTGTGATGGAATGCGAGGGGATTCAATGGGATATAAA
TCTATTCAAGTCTGAATACGTCTCCCCATGTTACAGGAGCTCCAGCCAGT
GAAGCCGTGGCGTCATTATTTAGATGCCACAGAAGAAGGACCCATATGTC
CTCAGTATGGCATCGACGAGCTGTACGGACGTATGGTCGCCCCCACAAAG
GGTATGAGTGAATCGTGCATCTACGCCAACGTCCATGTACCCTTGGAAGC
TCTTTCAGTCGTGAGAAGTACTGACGAGTACGAATACAAGGACTGGGACA
GACATGGGCACAAAAAGGGCATTCCTATTTTAGTTTTCATTCATGGCGGA
GGCTTTCAAGTAGGGTCAGGAGACACTGACCTTCACGGACCAGAGTACCT
CGTCAGCAAGGGGATAATAGTGATCACTTTCAATTATAGGTATTCATTTG
TATTTTAAACAGTCGTTAGTCATATGTTAGATATATTTTAATTACTTGTT
AACATGTATCAGTTACAATTTGCATACTCAGTTTAATCACTCAAATTAAG
TTGAATAGTTATTCTGATATGAAATTTAAAATTGTATCACCAGGATCAAC
GTGTTTGGTTTTCTTTCGCTGAATACTTCCAAAATACCTGGTAATGCGGG
TCTCAGAGACCAGGTGACGCTGCTGCGTTGGGTTCAGCGAAATGCGAGAG
CTTTTGGTGGAGACCCGAATGATGTAACGCTAGCGGGGCAGAGCGCTGGG
GCAGCCTGCGCCCATTTACTGTCTCTGTCAAACGCCACTAAGGGACTTTT
TAAGAGGTACTTAATAAGTTATGGCTTATGACGATATATGTTTAAAATAT
ATTATTCATTTTCATACCTCGACACATTTAAAATATGGACGGCACTCTTT
TTCAGGGTTATAATAATGAGTGGTACTGCCGTACCGTCGTTTTACGCAGC
TTCACCGATTTACGCAAAACAGGCTGCTACCAGATTTTTAACGCTCTTGG
GGATCAACTCCACTGATCCGGACCTCATCCATGACCAACTTGTTAAAACT
CCACTCAAAGACATTTTAAGAGCTAACTCCGAGTACCAAATTGAAAGCGG
GCTAGTCTCCTTTGTACCAGTGAGGGAAGACAAACAATTAGAAATTGAGA
GAATTGTAGACGATGATCCAATCACACTCATGGAGCAAGGTCGAGGGAAA
GAATATCCAATGATCGTTGGTTTCACTGACAACGAGTGCGAATTTTTCAG
GAGAAGACTGTTTGACATTGATATTTTGGGTCGGATAAAAGCTAACCCAC
TCGTGATTTTAAGACCTGAGATTCCATTTACAACGCTTCCTAATGTGGCA
CTCTCATTGGCCAATAAAGTGATTGACCGGTACTTCCACGGAAATCTAAA
TATAGTTGACTATTTAGAAGTATGCAGAGACACATTGTTTATGTATCCAG
CGTTTAAAATAGTTCAGTGGAGAGCT

Coding sequence (CDS) from alignment at SFRU_RICE_012467:265..2290+

>SFRICE034480-RA ID=SFRICE034480-RA|Name=SFRICE034480-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1344bp|location=Sequence derived from alignment at SFRU_RICE_012467:265..2290+ (Spodoptera frugiperda rice)
ATGCTTTGGCGCTGCAGTGTGCTGGTGATCGCCGTCTGCTTCTCGTTTGA
CATCGTCTCCTCTCATAAGTTGAGATGTAATGTGCGCATGCGTATTGAAT
CTGGATGGGTCTGCGGCCTGCGCAGACGAGGAGAATACAACACCGAGTAC
GCCAGCTTCAGGGGCATTCCGTATGGCCGGCAACCACTGGGGGAGCTGCG
GTTTAAGGAGCTCCAGCCAGTGAAGCCGTGGCGTCATTATTTAGATGCCA
CAGAAGAAGGACCCATATGTCCTCAGTATGGCATCGACGAGCTGTACGGA
CGTATGGTCGCCCCCACAAAGGGTATGAGTGAATCGTGCATCTACGCCAA
CGTCCATGTACCCTTGGAAGCTCTTTCAGTCGTGAGAAGTACTGACGAGT
ACGAATACAAGGACTGGGACAGACATGGGCACAAAAAGGGCATTCCTATT
TTAGTTTTCATTCATGGCGGAGGCTTTCAAGTAGGGTCAGGAGACACTGA
CCTTCACGGACCAGAGTACCTCGTCAGCAAGGGGATAATAGTGATCACTT
TCAATTATAGGATCAACGTGTTTGGTTTTCTTTCGCTGAATACTTCCAAA
ATACCTGGTAATGCGGGTCTCAGAGACCAGGTGACGCTGCTGCGTTGGGT
TCAGCGAAATGCGAGAGCTTTTGGTGGAGACCCGAATGATGTAACGCTAG
CGGGGCAGAGCGCTGGGGCAGCCTGCGCCCATTTACTGTCTCTGTCAAAC
GCCACTAAGGGACTTTTTAAGAGGGTTATAATAATGAGTGGTACTGCCGT
ACCGTCGTTTTACGCAGCTTCACCGATTTACGCAAAACAGGCTGCTACCA
GATTTTTAACGCTCTTGGGGATCAACTCCACTGATCCGGACCTCATCCAT
GACCAACTTGTTAAAACTCCACTCAAAGACATTTTAAGAGCTAACTCCGA
GTACCAAATTGAAAGCGGGCTAGTCTCCTTTGTACCAGTGAGGGAAGACA
AACAATTAGAAATTGAGAGAATTGTAGACGATGATCCAATCACACTCATG
GAGCAAGGTCGAGGGAAAGAATATCCAATGATCGTTGGTTTCACTGACAA
CGAGTGCGAATTTTTCAGGAGAAGACTGTTTGACATTGATATTTTGGGTC
GGATAAAAGCTAACCCACTCGTGATTTTAAGACCTGAGATTCCATTTACA
ACGCTTCCTAATGTGGCACTCTCATTGGCCAATAAAGTGATTGACCGGTA
CTTCCACGGAAATCTAAATATAGTTGACTATTTAGAAGTATGCAGAGACA
CATTGTTTATGTATCCAGCGTTTAAAATAGTTCAGTGGAGAGCT