Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Full name | SFRICE034480 |
| eAED | 0.07 |
| QI | 55|1|0.8|1|1|1|5|0|448 |
| AED | 0.07 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| SFRICE034480-RA-five_prime_UTR | SFRICE034480-RA-five_prime_UTR-6 | Spodoptera frugiperda rice | five_prime_UTR | SFRU_RICE_012467 265..319 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >SFRICE034480-RA ID=SFRICE034480-RA|Name=SFRICE034480-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1399bp|location=Sequence derived from alignment at SFRU_RICE_012467:265..2290+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.
TATATGCAGCCCGTAAGTGCTGAGCGGTAAACTGGCAGAGGTAATTGAAC
ACATCATGCTTTGGCGCTGCAGTGTGCTGGTGATCGCCGTCTGCTTCTCG
TTTGACATCGTCTCCTCTCATAAGTTGAGATGTAATGTGCGCATGCGTAT
TGAATCTGGATGGGTCTGCGGCCTGCGCAGACGAGGAGAATACAACACCG
AGTACGCCAGCTTCAGGGGCATTCCGTATGGCCGGCAACCACTGGGGGAG
CTGCGGTTTAAGGAGCTCCAGCCAGTGAAGCCGTGGCGTCATTATTTAGA
TGCCACAGAAGAAGGACCCATATGTCCTCAGTATGGCATCGACGAGCTGT
ACGGACGTATGGTCGCCCCCACAAAGGGTATGAGTGAATCGTGCATCTAC
GCCAACGTCCATGTACCCTTGGAAGCTCTTTCAGTCGTGAGAAGTACTGA
CGAGTACGAATACAAGGACTGGGACAGACATGGGCACAAAAAGGGCATTC
CTATTTTAGTTTTCATTCATGGCGGAGGCTTTCAAGTAGGGTCAGGAGAC
ACTGACCTTCACGGACCAGAGTACCTCGTCAGCAAGGGGATAATAGTGAT
CACTTTCAATTATAGGATCAACGTGTTTGGTTTTCTTTCGCTGAATACTT
CCAAAATACCTGGTAATGCGGGTCTCAGAGACCAGGTGACGCTGCTGCGT
TGGGTTCAGCGAAATGCGAGAGCTTTTGGTGGAGACCCGAATGATGTAAC
GCTAGCGGGGCAGAGCGCTGGGGCAGCCTGCGCCCATTTACTGTCTCTGT
CAAACGCCACTAAGGGACTTTTTAAGAGGGTTATAATAATGAGTGGTACT
GCCGTACCGTCGTTTTACGCAGCTTCACCGATTTACGCAAAACAGGCTGC
TACCAGATTTTTAACGCTCTTGGGGATCAACTCCACTGATCCGGACCTCA
TCCATGACCAACTTGTTAAAACTCCACTCAAAGACATTTTAAGAGCTAAC
TCCGAGTACCAAATTGAAAGCGGGCTAGTCTCCTTTGTACCAGTGAGGGA
AGACAAACAATTAGAAATTGAGAGAATTGTAGACGATGATCCAATCACAC
TCATGGAGCAAGGTCGAGGGAAAGAATATCCAATGATCGTTGGTTTCACT
GACAACGAGTGCGAATTTTTCAGGAGAAGACTGTTTGACATTGATATTTT
GGGTCGGATAAAAGCTAACCCACTCGTGATTTTAAGACCTGAGATTCCAT
TTACAACGCTTCCTAATGTGGCACTCTCATTGGCCAATAAAGTGATTGAC
CGGTACTTCCACGGAAATCTAAATATAGTTGACTATTTAGAAGTATGCAG
AGACACATTGTTTATGTATCCAGCGTTTAAAATAGTTCAGTGGAGAGCT back to topprotein sequence of SFRICE034480-RA >SFRICE034480-PA ID=SFRICE034480-PA|Name=SFRICE034480-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=448bp
MLWRCSVLVIAVCFSFDIVSSHKLRCNVRMRIESGWVCGLRRRGEYNTEY
ASFRGIPYGRQPLGELRFKELQPVKPWRHYLDATEEGPICPQYGIDELYG
RMVAPTKGMSESCIYANVHVPLEALSVVRSTDEYEYKDWDRHGHKKGIPI
LVFIHGGGFQVGSGDTDLHGPEYLVSKGIIVITFNYRINVFGFLSLNTSK
IPGNAGLRDQVTLLRWVQRNARAFGGDPNDVTLAGQSAGAACAHLLSLSN
ATKGLFKRVIIMSGTAVPSFYAASPIYAKQAATRFLTLLGINSTDPDLIH
DQLVKTPLKDILRANSEYQIESGLVSFVPVREDKQLEIERIVDDDPITLM
EQGRGKEYPMIVGFTDNECEFFRRRLFDIDILGRIKANPLVILRPEIPFT
TLPNVALSLANKVIDRYFHGNLNIVDYLEVCRDTLFMYPAFKIVQWRA back to topmRNA from alignment at SFRU_RICE_012467:265..2290+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >SFRICE034480-RA ID=SFRICE034480-RA|Name=SFRICE034480-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2026bp|location=Sequence derived from alignment at SFRU_RICE_012467:265..2290+ (Spodoptera frugiperda rice)
TATATGCAGCCCGTAAGTGCTGAGCGGTAAACTGGCAGAGGTAATTGAAC
ACATCATGCTTTGGCGCTGCAGTGTGCTGGTGATCGCCGTCTGCTTCTCG
TGTAAGTTAATTATTATACAAACACTCATCCGTGGGAGGTATTTCACATT
GGACACCCGTTTTAATAGCACCCAAGCTAATAGCACCGGAGATGTTCCAC
TTACGGCACCCATGGGTATTTTTTGGGGGTGCCCAATGTGGAATACCTCA
TCCGTAGTCTTGGAAATTAAATACCAATAAAGCTACGGAGTGATCTGTTA
CTCAATGTCCTACAGTATTATACCGACATTTTATTTTTAAAATCATACGG
TAAAGTAAGCGTAAAGCTTTTTTTCTTGTCACATTTCCAGTTGACATCGT
CTCCTCTCATAAGTTGAGATGTAATGTGCGCATGCGTATTGAATCTGGAT
GGGTCTGCGGCCTGCGCAGACGAGGAGAATACAACACCGAGTACGCCAGC
TTCAGGGGCATTCCGTATGGCCGGCAACCACTGGGGGAGCTGCGGTTTAA
GGTGGGCCCGTCACTGTGATGGAATGCGAGGGGATTCAATGGGATATAAA
TCTATTCAAGTCTGAATACGTCTCCCCATGTTACAGGAGCTCCAGCCAGT
GAAGCCGTGGCGTCATTATTTAGATGCCACAGAAGAAGGACCCATATGTC
CTCAGTATGGCATCGACGAGCTGTACGGACGTATGGTCGCCCCCACAAAG
GGTATGAGTGAATCGTGCATCTACGCCAACGTCCATGTACCCTTGGAAGC
TCTTTCAGTCGTGAGAAGTACTGACGAGTACGAATACAAGGACTGGGACA
GACATGGGCACAAAAAGGGCATTCCTATTTTAGTTTTCATTCATGGCGGA
GGCTTTCAAGTAGGGTCAGGAGACACTGACCTTCACGGACCAGAGTACCT
CGTCAGCAAGGGGATAATAGTGATCACTTTCAATTATAGGTATTCATTTG
TATTTTAAACAGTCGTTAGTCATATGTTAGATATATTTTAATTACTTGTT
AACATGTATCAGTTACAATTTGCATACTCAGTTTAATCACTCAAATTAAG
TTGAATAGTTATTCTGATATGAAATTTAAAATTGTATCACCAGGATCAAC
GTGTTTGGTTTTCTTTCGCTGAATACTTCCAAAATACCTGGTAATGCGGG
TCTCAGAGACCAGGTGACGCTGCTGCGTTGGGTTCAGCGAAATGCGAGAG
CTTTTGGTGGAGACCCGAATGATGTAACGCTAGCGGGGCAGAGCGCTGGG
GCAGCCTGCGCCCATTTACTGTCTCTGTCAAACGCCACTAAGGGACTTTT
TAAGAGGTACTTAATAAGTTATGGCTTATGACGATATATGTTTAAAATAT
ATTATTCATTTTCATACCTCGACACATTTAAAATATGGACGGCACTCTTT
TTCAGGGTTATAATAATGAGTGGTACTGCCGTACCGTCGTTTTACGCAGC
TTCACCGATTTACGCAAAACAGGCTGCTACCAGATTTTTAACGCTCTTGG
GGATCAACTCCACTGATCCGGACCTCATCCATGACCAACTTGTTAAAACT
CCACTCAAAGACATTTTAAGAGCTAACTCCGAGTACCAAATTGAAAGCGG
GCTAGTCTCCTTTGTACCAGTGAGGGAAGACAAACAATTAGAAATTGAGA
GAATTGTAGACGATGATCCAATCACACTCATGGAGCAAGGTCGAGGGAAA
GAATATCCAATGATCGTTGGTTTCACTGACAACGAGTGCGAATTTTTCAG
GAGAAGACTGTTTGACATTGATATTTTGGGTCGGATAAAAGCTAACCCAC
TCGTGATTTTAAGACCTGAGATTCCATTTACAACGCTTCCTAATGTGGCA
CTCTCATTGGCCAATAAAGTGATTGACCGGTACTTCCACGGAAATCTAAA
TATAGTTGACTATTTAGAAGTATGCAGAGACACATTGTTTATGTATCCAG
CGTTTAAAATAGTTCAGTGGAGAGCT back to topCoding sequence (CDS) from alignment at SFRU_RICE_012467:265..2290+ >SFRICE034480-RA ID=SFRICE034480-RA|Name=SFRICE034480-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1344bp|location=Sequence derived from alignment at SFRU_RICE_012467:265..2290+ (Spodoptera frugiperda rice)
ATGCTTTGGCGCTGCAGTGTGCTGGTGATCGCCGTCTGCTTCTCGTTTGA
CATCGTCTCCTCTCATAAGTTGAGATGTAATGTGCGCATGCGTATTGAAT
CTGGATGGGTCTGCGGCCTGCGCAGACGAGGAGAATACAACACCGAGTAC
GCCAGCTTCAGGGGCATTCCGTATGGCCGGCAACCACTGGGGGAGCTGCG
GTTTAAGGAGCTCCAGCCAGTGAAGCCGTGGCGTCATTATTTAGATGCCA
CAGAAGAAGGACCCATATGTCCTCAGTATGGCATCGACGAGCTGTACGGA
CGTATGGTCGCCCCCACAAAGGGTATGAGTGAATCGTGCATCTACGCCAA
CGTCCATGTACCCTTGGAAGCTCTTTCAGTCGTGAGAAGTACTGACGAGT
ACGAATACAAGGACTGGGACAGACATGGGCACAAAAAGGGCATTCCTATT
TTAGTTTTCATTCATGGCGGAGGCTTTCAAGTAGGGTCAGGAGACACTGA
CCTTCACGGACCAGAGTACCTCGTCAGCAAGGGGATAATAGTGATCACTT
TCAATTATAGGATCAACGTGTTTGGTTTTCTTTCGCTGAATACTTCCAAA
ATACCTGGTAATGCGGGTCTCAGAGACCAGGTGACGCTGCTGCGTTGGGT
TCAGCGAAATGCGAGAGCTTTTGGTGGAGACCCGAATGATGTAACGCTAG
CGGGGCAGAGCGCTGGGGCAGCCTGCGCCCATTTACTGTCTCTGTCAAAC
GCCACTAAGGGACTTTTTAAGAGGGTTATAATAATGAGTGGTACTGCCGT
ACCGTCGTTTTACGCAGCTTCACCGATTTACGCAAAACAGGCTGCTACCA
GATTTTTAACGCTCTTGGGGATCAACTCCACTGATCCGGACCTCATCCAT
GACCAACTTGTTAAAACTCCACTCAAAGACATTTTAAGAGCTAACTCCGA
GTACCAAATTGAAAGCGGGCTAGTCTCCTTTGTACCAGTGAGGGAAGACA
AACAATTAGAAATTGAGAGAATTGTAGACGATGATCCAATCACACTCATG
GAGCAAGGTCGAGGGAAAGAATATCCAATGATCGTTGGTTTCACTGACAA
CGAGTGCGAATTTTTCAGGAGAAGACTGTTTGACATTGATATTTTGGGTC
GGATAAAAGCTAACCCACTCGTGATTTTAAGACCTGAGATTCCATTTACA
ACGCTTCCTAATGTGGCACTCTCATTGGCCAATAAAGTGATTGACCGGTA
CTTCCACGGAAATCTAAATATAGTTGACTATTTAGAAGTATGCAGAGACA
CATTGTTTATGTATCCAGCGTTTAAAATAGTTCAGTGGAGAGCT back to top
Synonyms
The feature 'SFRICE034480-RA' has the following synonyms
| Synonym |
|---|
| SFRICE034480-PA |
| SFRICE034480 |
| maker-SFRU_RICE_012467-augustus-gene-0.3-mRNA-1 |
|