AG6000668-RA (mRNA) Aphis glycines Ag_bt1

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameAG6000668-RA
Unique NameAG6000668-RA
TypemRNA
OrganismAphis glycines Ag_bt1 (aglycines_bt1)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SBAphidCtg1001contigSBAphidCtg1001:4970085..4970601 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly (v6.0) and Annotation OGS6.0 of Aphis glycines, Biotype 1 (Ag_bt1)2018-01-26
Properties
Property NameValue
AED0.47
QI0|0|0|1|0|0|4|0|78
eAED0.62
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
AG6000668AG6000668Aphis glycines Ag_bt1geneSBAphidCtg1001 4970085..4970601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
AG6000668-RAAG6000668-PAAphis glycines Ag_bt1polypeptideSBAphidCtg1001 4970085..4970601 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
AG6000668-RA:1AG6000668-RA:1Aphis glycines Ag_bt1exonSBAphidCtg1001 4970085..4970120 +
AG6000668-RA:2AG6000668-RA:2Aphis glycines Ag_bt1exonSBAphidCtg1001 4970178..4970279 +
AG6000668-RA:3AG6000668-RA:3Aphis glycines Ag_bt1exonSBAphidCtg1001 4970432..4970489 +
AG6000668-RA:4AG6000668-RA:4Aphis glycines Ag_bt1exonSBAphidCtg1001 4970561..4970601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
AG6000668-RA:cdsAG6000668-RA:cdsAphis glycines Ag_bt1CDSSBAphidCtg1001 4970085..4970120 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>AG6000668-RA ID=AG6000668-RA|Name=AG6000668-RA|organism=Aphis glycines Ag_bt1|type=mRNA|length=237bp|location=Sequence derived from alignment at SBAphidCtg1001:4970085..4970601+ (Aphis glycines Ag_bt1)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTATAATATCAAAAATTATTTTATTATTGCAACTATCCTACACGCT
TCACCAAATCCTACAACTATTGGCGTTGGAACAGTTCCACTCCTTAAACC
TCGTTCTTGACCACCTCCACTCTGAAGAGGTTCTAAACATCAATATTTTG
ATCATTAACATCGACAGTAATCTTGCCAACCGCTTGAGCTGCATCACTGT
CAGTTTATTTTTTGATTATTCTCACCAATTTCCTTAA
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protein sequence of AG6000668-RA

>AG6000668-PA ID=AG6000668-PA|Name=AG6000668-RA|organism=Aphis glycines Ag_bt1|type=polypeptide|length=78bp
MIIISKIILLLQLSYTLHQILQLLALEQFHSLNLVLDHLHSEEVLNINIL
IINIDSNLANRLSCITVSLFFDYSHQFP
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mRNA from alignment at SBAphidCtg1001:4970085..4970601+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>AG6000668-RA ID=AG6000668-RA|Name=AG6000668-RA|organism=Aphis glycines Ag_bt1|type=mRNA|length=517bp|location=Sequence derived from alignment at SBAphidCtg1001:4970085..4970601+ (Aphis glycines Ag_bt1)
ATGATTATAATATCAAAAATTATTTTATTATTGCAAGTTAATAAATAAAT
AAATTGTATACAACTATTCTACTAACCTCCATTTCTTGTTTAGCTATCCT
ACACGCTTCACCAAATCCTACAACTATTGGCGTTGGAACAGTTCCACTCC
TTAAACCTCGTTCTTGACCACCTCCACTCTGAAGAGGTTCTAAACGTACT
CTAGGTTTACGCCGAACAAATAATGCTCCAATACCTTTTAATAAGAAAAG
ATAATAGTATTGATAGTATTATTTATAAAACACAAAAACTTATTTTCAAT
TTTATACCTTTTGGTCCATATAACTTATGTCCACTTATAGACATCAGATC
AATATTTTGATCATTAACATCGACAGTAATCTTGCCAACCGCTTGAGCTG
CATCAGTATGGAAAAATACTTTTTTTGACTTGCATAATTTACCTACAAAA
ATAATTAGATAATAAGTTTACTTTAGCTGTCAGTTTATTTTTTGATTATT
CTCACCAATTTCCTTAA
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Coding sequence (CDS) from alignment at SBAphidCtg1001:4970085..4970601+

>AG6000668-RA ID=AG6000668-RA|Name=AG6000668-RA|organism=Aphis glycines Ag_bt1|type=CDS|length=237bp|location=Sequence derived from alignment at SBAphidCtg1001:4970085..4970601+ (Aphis glycines Ag_bt1)
ATGATTATAATATCAAAAATTATTTTATTATTGCAACTATCCTACACGCT
TCACCAAATCCTACAACTATTGGCGTTGGAACAGTTCCACTCCTTAAACC
TCGTTCTTGACCACCTCCACTCTGAAGAGGTTCTAAACATCAATATTTTG
ATCATTAACATCGACAGTAATCTTGCCAACCGCTTGAGCTGCATCACTGT
CAGTTTATTTTTTGATTATTCTCACCAATTTCCTTAA
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Synonyms
The feature 'AG6000668-RA' has the following synonyms
Synonym
maker-SBAphidCtg1001-snap-gene-49.60-mRNA-1